rab11fip1a (LOC108265531,LOC108426714)


Basic Information

Item Value
gene id rab11fip1a
gene name LOC108265531,LOC108426714
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 24693337 ~ 24712086 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925262.2
CACTGCTAGTAGCTTCGGTGGTGATTAGCGGTTGTGCTAGCTCCCGACATCACAACATTGGAAGGTTGCGAGAAAAAGTTTGCGACGGAGTTATAAAGGGCAGTTTAGCAGATTTTCGGGCAGTCAAGGAGAACAAAACGGCGCAGAAAGGCGGAATTAAAGAAGCGTCCATATCAGCTGGGGGCGTggcttgtgtgcgtgtgtggggaTATAGCAACCGCCACAGGAACCATGTAAGAAGTTTGTGAGGACGCTGAGTGGAGCAGGAGCCTCTGAGTGGAGCAGGAGCCTCTGAGTGGAGCAGGAGCCTCTGAGTGGAGCAGGAGCCGCTGTCTGAAACAGGAGCCGCTGTCTGAAGCAGGAGCCGCTGTCTGAAACAGGAGCCGCTGTCTGAAGAGCGAGGGAAAAAGTCAGCCGTGGAGTGTTGGATACAGTGTCTGAGAGCGATACACGTTGAGTAGTGAGCTAAGCTACTATGTATTGAGGCGTAGGCAGGGTTTAGGAGGTGTTGGTGTAGCATTGGGGTGGAGGATGTCTCTCGCCGAGCAGAGCCAGCAGTGGTACCCGACCAGCGTCCAGGTGACGGTGCTTCAGGCGCGCAAGCTGCGGCTCAAAGGCAAGAATGGTACGAATGACGCGTACGCCATCATCCAGGTGGCCAAGGACAAGTTTTCCACCGCGGTGGCGGAGAAGTGCGTGGATCCTGTGTGGAAGGAAGAAGCCAGCTTCGACCTGCCGCTGTTCCACCGCGGGAACGCCGAGCGCTGCACCCTGTACATCGTGGTGATGCACCGCGCCCTGGTGGGCATGGACAAGCTGCTGGGCCAGGCAGTCATCAACCTGCTGGACGTGCACGACAACAAGGCCCGGAAAAACACCGATTGGTACAAGCTGCTGGATAAGAACGGTAAAGCAGACAAGGAGAGAGGCGAGGTTCTCCTGGACATCCAGTTCATGCGGAACAACATGACAGCCAGCATGTTCGATCTCTCCATGCAAGACAAGCCTCGGTCTCGTATCTCCAAGCTCAAAGATAAGGTCCGGGGCAAGAAGAAGGATGGACTCTCTGACTCCGCTTCCGCTATTGTTCCTGCCACAGTTAGTCAGGTCCTGACAGACAGCGAGGGGGAAGAAGAGGGAAGCACAGACTCTCCAAAATTGAAGAAGTCATCTAAATTTAAGTCTCTTTTTGGATCAAAGACAAATCTCCACAGAGGCGTGTCCCAATCCATGTCCACCCTCGGTACGCTGCCTGAGAAGAACAGCTCGCTGAGCAGCAGCCGATCCTCAGGCCTCAATGAAGAATCTGCTGAAGGCAAAAACAAGTTTAAGTTTTTGGGCCACAAGAGAAACAGTAGCACTGACAGCAAAATATCTCTAGGCCCTTTCACCCTGCTGAATCGCTCCAAACAGAGCACTCCTGAACAGAGCAACCTGTGTATCAATGGCAGTCATGTGTATGCTGAGGATCAAGAGACCAAGCCGAATTCTGGTTCCTCCCTCAGCCTGAGTGGCTCTGCAAAAGGTTCCATAGAAGACCTGCGGAAATACCACGAACGAAAACCATCTGCTGGTTCCACTGACTCGTTCAAGGGCCTCAGTATTCCTAGTTACAAGCCTGACTCAACAGACAGGGAATTCCAAGTCCAACAACGCCCTCAAGAGGATGAAGAGAAGAAGCACAAGAAGACAGAAGGACGCCTGCAGGAGCTTTTGGATGAgcaggagagaaagaggcagcAAGAGCAAgatgagagatggagaaaacTGGAGGAAGATGAAAGAAAGATGCAGCAGGAACGAGAGAGGAAgcggcaggaggaggaggagcagcaaaGAAGGAAGCGTGAAGAAGAGGCAAGGAAAGCAGAGGAACAGAAACGCCAAGAGGAGTCCAGAGTGACTGAGCGGCTCACTTCTCTTTTCGGCCTAGGGCGGAAGAAAGAGGAGCAAATTTCTCCAGCAGTGGAGAGTCCTAAACAACTGGAAGTACCAGCCTCCACAAACCCGTTTGAGGAAATTCCACTTGGCTCAGACAGCCCAAATCCTTTCCTAGAGGAGAAGCCAGCAGAACCACAGAAAGAGGTGCGAACTGCCTTCACTCCAATGCCACCTTCCAGCGGCTTTCCAGCTCGTACAGCCAAGGTTTCTGCAGTCAAgccaagATTGACTCTCAGTCAGAAGACTGAAACAGATAATACTGATTCCCTTGCCTCCCCTGTCCCCTCAGACATCCAGAACTCTGTTCCTGCTTCTACTTTTTCCCCTGAAGCATCACCTTCTAGTGATTCTTTTGAGTCTTTTGATATGTTTtctaacctccactcttctatgGCACCTCCTAAACCCCAGAGAACCTTTTCAGACTCGTCAAGAGGCAGCATGGAGAACCGTTCAGGAGTTGATAATGCCACTAACTTGTCTGAGAAAAAGTACAGAGCCGCACAGTCACCCAGCTATCCTGGGGATCCattcaaaaatgaaaagcacCATCTAAAAAATGGCGTACAGGTTAGTCCACCAACCTCGGAGAAAACTCAAAAACCTTCACTTCCTCCTCCTGACTATGAAGCTCTTTTTCCCAAGAAGAGACATGGTGTAATGACTGACACCCGTTGGGAACACATTATTGCTGAAGTGAACCAGAGAAAGATGAATTTTCAGGATGGTGAAAAAGAAATGAGCGTAGATGGTCCTGATGAGCCCATCTCAAACAAATCTTCAATTTTAAAGGAAAGGAATACATCAAGCCTCAACCAGCATCACAGGGATTATCAGGCGGTGTCCTCTGCCCCCACAAAGGGAATGGAGCCTAAGCCGGCTCTAATTCCACCCAAACCAGCTAGTTTGgcaacaacaaaacagcagcGTGAGGCTAATTCTGAGCAAGGCCATACCCATAAACAATTATATTCTGTACATGGTGAAAAGACCAAAACAGATTTGGGAAGAAACCTGGGACCATCAGGCCAGAGTCAGCAAGACACTCGGATGAATGTAAAGGGAGCTTCAAACCCCATTCCTGACCCCACACTTGGTCAAATCTCAGAGCCAAAAATGGAAAAACCAACACCAACAGCCAGGAGTATAAAAAAGCCAACTTCAAGCAGTGATGTTGATACTACAGGGTTGCCTCTAGCCAAACATAGGAAAGGAGCTCCAAGTAAAGAACCTGTCATACAGGTTCAACCAGAGCAAAGTATGCTCGCTTTTACATCCTCAGCAAGTTCTCAAgtggatggaaaaaaagaaggttCCAAGACAGCTAAGAGTTTGTGGGAGAATTTAGGCTTTGCGGAAGGAAAGCCTACCCCTGTAAATAAAACTGCTAAAACGGTTAACATACCAAAAGAACAACCATTTACAAATGTCACAAGTGCtcctgagaaaaaaatgactgaagtTGACCCTTTCCCAAGTGATAAACTAATCTCTCAAGATCCCTGGGCTTTACCACAACAGACCATGGATCAAGATGACTTTTTCACTGGTGGTccgaaggaaggaaaaaagccTGAAGATCAGAGATTATCCTCAGATGACTTTGATAACATATTTGGATCTGGTGCATCTAAAAATGAAATGGATCCTTTCTTTGTGCCCAAAGATAAAGCAAATATTTTCTTTGAATCTGTGGCCTCTAAAAATGAAACAGATTTGAAAAAATCACATAACTCAAGCCCTTCCTCCCAGAAGGTATactcacaaaagaaaaaactagcACCTCCACCCCCTGAGAAGCCTGTAATGGGGAAAGATACCATGGACAAACCAGTCCTTCAAGAGGCTGATGATGTTGAATTAACTGTTACTAGTCTTGCTGAACCAAAGGGTGGTGAAACTACAGAAGCCACATCAAAAGCTAATTTGGATCCATTTACATCCCTGTCTTCAGCTATTCCAGAACTCCTGTCTGGAAGTGCATCTGGGGGCAAAAGCACACTCTGTGCCTGGGTATCACCCTCTGAGGTTCAGTCAGGCCCTTCACAAAGCAGTGGAGGTGGTGTGGTATTTACCTCTCGCAGACCACACCCAGTGAAACCGATGAGTCCCTATGAAAGCCAGTCTCCTGGTAGTATTTCCTCGGGAAAAGATTTGAAGATTCCAACGATCCGAGAAGTGGCTGAAAAATCAAAGTCTGTAGAGTGTGGCCCATACACCCAGCTCACTCAGGAAGAGTTGATCACCCTTGTGGTGAAGCAGCAAACTGAGCTATCCAAAAAGGATGAGAAGATTCTTGAGCTGGAAGATTACATCGATAATCTGCTCGTGCGTGTCATCGACGAAAAACCCAGCATCCTGTTGGCCCTAAACGCCAAGGTTTAGGGGAAGAAGTTCTTCACTATGACACTATGAGGTGGAAGATAACTGAACCTACTACACCTACACCACAGTGTAACATAATGTTTTGATGAGATGTGCTTCCTAGGAACCAAACCTTCCAAAATGATAACTTTTGTTATAGACACAGGCTATACTCTACGGTTTcacattcaggttttttttttagcttgattTGGTTGAGCTGCATCAGACAGGTGAAAGAAAGTGTTCAATGAGTGAGATAGGACATCTGTTGCTCTGGACTAATATCTGTTAAGTCTCAAGATGAAACCAAGGAAGGTCTTTTTTTCACTATTCATAAAACGGTGACATGAAGGATTAACAGTTTTATGCTGGGATTATTTCttaatgtgttgttttatgtgttATGTCTACAAAGTGTGTCTTCAATAATGGACAGATGAAATGTGTTGAATCATTGTAGCATTGTATTTATCTGTGGAATGATTCGAATTTTTTGTCACTGaatgatagatttttttttcttaacactGAACTACATTTGACTGGTGTCTGGGTTGTTTTAATGTAACAGTGGTGTCACAGGTACATTTTACTATCTGCATTTCTGTGTCTGATATTTGTATCTGTTGCATTTTGTTGCCCCATACCTCACACCATTAACACTAGATCTTCCCATGTTATCTGGCTTTTGCCTGACCCCTGCTATAGGTTATACTCATTCTTGTTGGCTGAAGATTAGAATTAGTTCAGACCTGCCCAAAATGTGCACAATGTTGTTCCACAGTGTCTTCATTCATGCTTTAAGATATTATGGcattaattgttatttttcttgGCTGCTGTCTTCAAACTTTAAATGCTCATTtaagaaaagacatttttaatgatctctgctgttaaaatatttattttcctaacTATATTTTGAAGAAAATTGCTTTGTGTACTAATATGGCAACTCTCAGGCCACATTCTGGTACTATGACATCATTACTATATAACACTATTTCTATGTTTATCAGTGTGACCTAATCATGAGTCAGCTATAGTGGTGCTTCACCACTTCCTGATTGATACTTTAAGATCAACTGCAATAAGACtatcatttattttgtatacCTGTGCCTTCTTGTGTCCTTTATGCATAACAATTTCTTTCTACATTCcaatgataaaatatattttggataAATTATGTATATTCAATAGATAATTTTTTATGTGTATTGCATTGAGACAATagttaatgtacatttattctGCTATATGAAAGTGAATAAAACTATTTATACCACAGG

Function

NR:

description
rab11 family-interacting protein 2-like

GO: NA

KEGG:

id description
K12484 RAB11FIP1_2_5; Rab11 family-interacting protein 1/2/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925262.2 True 5606 mRNA 0.45 6 24693337 24712086

Neighbor

gene id symbol gene type direction distance location
adgra2 adgra2 coding upstream 1897 24632224 ~ 24691440 (+)
pdlim2 pdlim2,LOC108265771,LOC103022934,LOC107740981,LOC107724143 coding upstream 69181 24561931 ~ 24624156 (+)
sorbs3 sorbs3,LOC108265711 coding upstream 134309 24505197 ~ 24559028 (+)
LOC113533128 NA coding upstream 194557 24495503 ~ 24498780 (+)
LOC113533523 LOC108265504 coding upstream 210769 24475586 ~ 24482568 (+)
vps13a vps13a coding downstream 166700 24878786 ~ 24925439 (+)
cep78 cep78 coding downstream 232027 24944113 ~ 24953424 (+)
cabin1 cabin1,LOC107747802 coding downstream 241997 24954083 ~ 25013114 (+)
tbx16 LOC108265264 coding downstream 309797 25021883 ~ 25025472 (+)
npy8br LOC108265010 coding downstream 371464 25083550 ~ 25099662 (+)
G138578 NA non-coding upstream 45886 24646779 ~ 24647451 (+)
G138535 NA non-coding upstream 190966 24502086 ~ 24502371 (+)
G138280 NA non-coding upstream 329576 24362949 ~ 24363761 (+)
G138239 NA non-coding upstream 568768 24121610 ~ 24124569 (+)
G138176 NA non-coding upstream 703240 23989898 ~ 23990097 (+)
LOC113533328 LOC108265709 non-coding downstream 18901 24730987 ~ 24783425 (+)
LOC113533216 NA non-coding downstream 135982 24848068 ~ 24849544 (+)
G138907 NA non-coding downstream 565211 25277297 ~ 25284948 (+)
LOC113533374 NA non-coding downstream 597819 25309905 ~ 25333613 (+)
LOC117597843 LOC108261789,LOC108265915 non-coding downstream 708968 25421054 ~ 25428188 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 679556 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 798612 23890416 ~ 23894725 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other upstream 936223 23750417 ~ 23757114 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other upstream 1168632 23514586 ~ 23524705 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other upstream 1431346 23248348 ~ 23261991 (+)
LOC113533115 gnrh1 other downstream 420655 25132741 ~ 25134258 (+)
egr3 egr3 other downstream 839808 25551894 ~ 25558731 (+)
LOC117597866 NA other downstream 1197489 25909575 ~ 25916807 (+)
car15 LOC108264895 other downstream 1688105 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 1850734 26562820 ~ 26567932 (+)

Expression


Co-expression Network