LOC113533260 (LOC108265644,LOC108442352,LOC103023429,LOC107594970)


Basic Information

Item Value
gene id LOC113533260
gene name LOC108265644,LOC108442352,LOC103023429,LOC107594970
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21567910 ~ 21616083 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925264.2
CGCACTAGCTTTCCTGAAAAGAGCACTACATTTCCCACAAATCCTGTGTAACATCATAACTCCCAGCTGGATGGAGTCCTGGCCAGCTGACGGCTCCTCacagcagaggagagagagagcgacagagctCTCATTAACGGGCAAGGAgcggagaggagaggagaggagaagagctCTCCATCGTCATGGAGTAGCACGACAAGAacgaataataataagaaaaagaaaaaaatagcttcTTGCCCGAAAACAGACATACTGTCGCTTCACAGCTGACATGTTCCAACATAGAAGAAACTAAATTATTCGCCCCGACAACAAATAAAAACGGTTTGTCGGAGACACCCTTGAAGGTTGCAGTTCATCTGTGGTGATTTTCctcacaagagagagagagagagaattgtcCAAGATGTCCACGGAGGAGATGCTGGCTGAGATCACGCGCCTCACCTGCGAGCTGCACGAGACCACGCGCGAGAAGATCCAGGCGGCGGAGTACGGGCTCGCGGTGCTGGAGGAGAAGCAGGCGCTCAAGCAGCAGTACGACGAGCTGGAGAGCGAATATGACAGCGTCCGACAAGAACTGGACCAGCTTAGAGAGGCGTTCGGACAGGCTCACTCCAACCAGAGGAAAGTGGCAGCCGATGGTGAGAGTCGGGAGGAATCTCTGCTCCAGGAGTCGGCATGTAAGGAGGCGTACTACGAGCAGCGTGTGCAGGAGCTACAGACCGAGCTCAGGCAGGCTCGTAACACCCTCACCAACACACAGTCAGAGAACGAGCGCCTGTCCACCATCACCCAGGAGCTCAGGGAGAACAGTCAGATGGTGGAGCTGCAGAGGTCCCGACTCCGTGATGACATCAAGGAGTACAAATTCCGCGAGGCTCGTCTACTGCAGGACTACAGTGAGCTGGAGGAGGAAAACATTGCACTGCAGAAACATGTGTCTGTGCTCAAACAGAGCCagGTGGAGTTTGAGGGCCTGAAGCATGAGATTCGTCGCCTGGAGGAGGACACGCAGTTCCTGAACAGCCAGTTGGAAGATGCCATCCGTCTGAAGGAGATAGCCGAGAAACAGCTTGGAGAAGCTCTGGAAACCATCAAGACTGAGAGGGAGCAGAAGGCGGCTATGAGGAAGGAACTGTCTCAGTATATGAACATCGGGGACTCCATGTACCACAATTCCTTGAGCATCTCTCTGGATGGGTTGAAGTTCAGCGAAGATGTGATGATCGAGCCCAACAACGACGACCCCATACACGGCTATGAAAACGGCTTTGACAAGATCCCTGATGCTGAAGATAACCGGATGTCCACGCCCAAAAAGGACCAGCTGTTCCATCCAGCCCCTAGCCTAGTGGAAGACCTGCTGAGTGAACTCAACCTCTCCGAAATCCAGAAGCTTAAACAACAACTTGTGCAGGTGGAGCGGGAGAAGGTGACATTGCTGTCAACATTGCAGGATTCACAAAAGCAGCTGGAGCAGGCCCACGGGGCTCTGTCAGAGGAGCACGAGAAGGTGAGCCGCCTCACTGAGAATCTGAATGCCATGCGCAAGCTTCACGCCAGCAAGGAGCGCCAGTCAGCCCTGGACAACGAGAAGGAACGTGACAGCAATGAGGACAGCGACTACTATGAGGTGGACATCAACGGGCCCGAGATCCTGGAGTGCAAGTACAAGgttgcTGTTTCCGAAGTGGGTCACCTGAAAGAGGAGCTGAAAACCCTGAAGTCTGAATACTCTGCTTGCCGGTCGCGGCTTGAGGACGAGCGTAGCCGATTGGAGAGCCAGGTGGCGTCGCTCCGCTCTGAGCTGAGCACCCTGGAGTGCAGCAGCCGTGCAGAGCGTGAGCAGCTGGCACGGATGGAGAAGGAGTTACGCCGGGCCAGTGAGGCAGCCGGTGAGAGCCAGGGAAGCCTGAGCGTGGCACAAGACGAGCTGGCCACGTTCAGTGAGGAGCTCGCCAACCTTTACCACCATGTTTGCATGTGCAACAATGAGACGCCCAGCCGAGTCATGCTCGACTTCTACCGCGAGGGCAAAGCCAACGCTGGCACCAACAGCAGCAATCGGGGCAGTCCTGAGGGCCGTGGCCGTCGTTCACCCATCCTGCTGACGCGTGGCCTCTTCCCCACCCCTGAGGCAGAATCTCCATCCCCCGTCTCTTCCCCAGTGGCTGACCCACGCAAGGAACCAATGAACATCTACAACTTAGTGGCCATCATCCGTGACCAGATCAGACACCTGCAACTGGCCGTGGACCGCAGCACAGAGCTGTCTCGTCAGCGCCTGGCCTCTGCCGAGCTTGGTCCCTCCGCTGACCGTGACCACGAGGCCAGTGTGGAAGAGATCCTTAAGCTCAAGTCTCTTCTCAGCACCAAGAGAGAGCAGATCGCCACCTTGAGAACTGTCCTTAAAGCCAACAAACAGACTGCTGAGGTGGCACTGGCCAACCTGAAGAGCAAATACGAGAATGAGAAGGCCATGGTGACTGAGACGATGATGAAGCTACGCAATGAGCTCAAAGCCCTGAAGGAGGATGCTGCCACCTTCTCCTCCCTTAGAGCCATGTTTGCCACCCGCTGTGACGAGTACGTCACTCAGCTGGACGAGATGCAGAGGCAGCTGGCAGCGGCTGAGGATGAGAAGAAGACCCTGAACTCTCTCCTACGCATGGCCATCCAGCAGAAGCTGGCCCTCACGCAGCGTCTAGAAGATCTCGAGTTCGACAACGAGCAGACGCGCCGAGGTGGAGCCAGCAGCAGGACCAAGTCCGCCTCCTCCCGAGCCAAGGCCACGCTCACAACCACGCAGTCACATGTAAGTCCACCCCTCGCTGCCACCTGCGGGGGTCGCGGCGAGCCCAACGGCCTCCTGGGAACGCCAGTTGTGTTCTGCAGCGAAAAGTACAAGATCTACTGCGAATAAAAGTGTGGCATGTTTTAAACAGCGCTTATCAGTGTACAAAGCCCCACTCACATGTGCTCTATTGCTCGCTATTTGCTGTATGCTGTGTATCTTTATGCCTTATGGTTATGCCTACCAGTGTGATAGTAGCTAGGTGAAAGATGGTTAATATGATAGCTGCCATTCATGTGTTTTGCAGAGGGCAGTTTGCTTCCTTCTGTACTCACGGTGCTGTATTTTAAGTGGCAGCTCCATATCTGAGTGTATGTTAGCACGCATGGAGTTTTCCTGACCACTAGTAATGCGATGGCGTCGTGTTGTGGTCGTGACGTATACCTAGCTGCCGTCTGCACCTTGGTAGATATCCTTCCCCTTTTCCCTTTCTCTAACGCATCTTCCTGCCCTCTTAttcttccccctctctctctcctgcctcGGAAAACCATTCTTCTAACCTGGCAGCCCGTTGTCTAATCAGGTGACTAATGTTTACATTgtatacatataaacattttaatatgcaaatccCCCACTTCTAACAGTAGGTGGAGGGCCTCTGGTGttctgaagtgaaaaaaaagagaaagcaaaacaacGGGTTACTAATATTTAGGAGCGTTTTCTGCTCTGTCTTGATCAATTGGAGGTGAGCAGGAGTGGGATGttatgatcattattattattattattattattattattattattatttcaaaatggcGAGCTTTTGGCCAAGACCCAAATAGCTAATTGTTTGCATGCAATTTGCTATATTCTTGGCTGCAAAAATGTGTATACTACATAGTGTCCTAGATGTCTCCACCTCGAGCACACGTATAAACAGGGCTCTACATGAGGGGATAATTATTACAGAGGAGcgtttcctctctctccataGGTCCGTCCCCTAAACATGGAGAGAGTCCTTCATAGCCATATCACTGGAGCATAAAGGAGGAGGGGAAAATCAGCTCACTCCCTCAAATTCAAGTGCACTTCTGCTAGGGGACTCAGGTTCCACATTTTGCCACACAAAAAGGCAGATTTTAATCTGATCTGAttggtgaaaagaaaaaaaaacaccttttgaTTGGTGATGATTCAACTTGATTCAACAAAAAGAGCACAAAACACAAGGCACACTCATTACGATGCCGAATGATAAATGAAGAGTGACAAGAAACATCACCATGGAAAAGTGCCTGTCTTCTGCTTTTATTGGCAACTGTCCATTTCTCAGTGTAAAGCCCTGTCCTTTATGTCTGAAAGCTAGTGCTAATCTCTGTCATCATTCTGTCTCACCCCAGTGCTTGTGTGCGAGTGTGtattagcttgtgtgtgtgagtgaatccTCTCATATCGAACACCTTTCCCTTGCTTCTCCTAACATCATTCTCCATGTAGATTGTCAGCAGCTTGCTCCCTCTGCCTCACCACTTTCCCTTTAAATATCACCAAGAAAACTTCCCATAACATTGTCATATCTTGATGCACACTCCTCTCCAGTGAACTTCAGTAATGTGCTGAAGTTGCGTGTCGAGGAAACAAACAAGCCGTGTTTAGTGTTCTAGTTTGTGCACAAGCTGAATACTTCCACGGCATCACATCACTTCAAGTAGTTTTGTtagaataaacaaaataaagctttaaaatagCAAGCGAATGCTagggaaatttaaaaaaaaaaagtgtggagCTTGTAGTTATCTTAAACCTATGCTGGcgatgaaaaccttttttttttttaataagctttaTTAGCCTAAAAGCAGGGTTGAGGACGGTTGAGGAAAAGTCAAAATGATTAGGTATTATATATTCGTAAAGAAATACTATTCAGGTAAAAAACCTTCCCAGGCCAGCTTCCTCCTAACCAGAggaagtgcatgtgtgtgagtgtgtgtttgcgaATCTGTGGAAGAGGCGAAGACCTCAGTCCTCAACTCTGCTTCTGCCTGTGCTGCATTTAAAGCCCTCGTTAGGCCTTTAGATAACGTACTGTATTAAAGAGACGCAAAGCTATCGCTCTcatctttctcacacactcatgtgAAACACAGCTTGGATCTGACCACTCTTTTCTGTTCCTTCATGCATCCTGTAAGCAACGAGTGAAGGCTTAAGATGGAGTCTTagacttttttaaaagcttttatgATACAAGCAGAGATTAGATAGTTAGAGTAAAAGGGCAAAAATGGGTGGAACCGGTgaattattctttaaaattttatactttttttttgttatacactCAGAGACCATTTATTCGAATTATGTTTGTCACATTTAACTCAGTGTAGTGTTCTAATTACTAATGATGTATGATCAGTGTTGTCAGTCTGAGGAACTTCTTCCTATAACTCTGGTTCCTCACGGGCTGGCaccacattaaaacacacatctgGCTTTCTACTAACATGCATGACATCTGGGAACCCACCTCAGTGATTCTTTATCATCATTTAAGGACACGACCGTTAGGTGGAGTTTTAACAGGAGATAGGCGGGGTTTTAATACTTGTGAACCAGTGGCTTTCCTGCGCTTGCTATTTTTCAAAACTAAACGTTCTGAGAAACATTCCAAactaaatgtctgaaatgttcCTCTTTTTGAAAATAAGTCAACAAACACCAGCTACGTTCGTTTTCTGGTGACTAACCTGCTAATACTCTTGCTTCTACTTCATTTTGGCCGACCAGTCAGACTTTTTTCCATCTGCACTACTTGTGGGCATTTATTGAACTGCATTCTGGCAGCATGCctctgatttattcatttaaactcTTCTAAAATTCAACATTCTAATATctattatttctttgttttcattttgcagTAAAGTTCAGCCCCTAGTTGAGCGGGGAAGTCGCCATTCCATCATGCTGATAAAATCACTCTGCTTTTAGCCCAAAGGAAATCCACTGGAAGACAAAAATAtctgattttataatttttttttttttttaacaacctGTTAATTCTCACAGGAAATATTTGACAAATGAGTATGAACTAAATTTAACATGGTTAAAATAGCatcatgttattatatatatatatatatatatcttttttagTTCAATAGGAAGCCAGTGCTCACAAATATTTAAACTCCGCCTACGAATTTAGATTCTGAGTCACTCTAAAttagaaaacaaagaaaggtgTTAAACAGGAACTATCCTACAATGAGTAGTtatcttttgttttgtaaacTGTGCACTTTTAATATAGGTATATTGCTTTCTTTATTAATCTAGGGTTAGGTTTGTAGTGCTTTGGTTTGTGAGTCAGTTCAAGTATACCGTATACTACACATATATATTGATagtaacagttttttttttttccatatatgCACTCTGTATGCAAAGAACAGAGATCAACTCACATATCCAAAACTACTCACACTGCAAACCAGTCCTATTGTATTCTGTGAAATGAATCCATGagcattttatcatttatattttttataatcacTTGATCATTTAAAATACGTCGTTTTTCATGTTTGTTCTACTGCCATATTCTAAAACAAAATCCCGGGTGGTCAGATGCTGGgcttttttgtctatttattattcttagGAATAGTTCAAAGTGAACATGGAGAAACTTGATGATATTTTTGGCTTAACACAGTAAAGCGTGCTTCAGAAAGAACAAAATCTACAACAGACATTGTGGAATTTTTTGGTCTTCTAGCACCGCTTTACTCAAGCTTTCTATGGATCGCTGATTTCACGAATTCTCTGCAAGCGTAAAAATTAATTCCAAATTGGAATGGTCTCATTCTCTCTTCGTTTATCGTGCCAAGTCTCGGTACACTGTTTTAAGTttgatacagaaaaaaaaaacagaatggagATCAGAAAGAAGAGAATTACTCTGGTGGGTATGATTTTTGAATTGCTCCCACTTTCATGCCCTCcatttgagttgtttttttttttttttttttggtttgttttgctCTTCGTTCTGACCAGTAGTGCCTTTCATTATTTCAAGAGAGAATTATAGTCTAGGTTTTAGTTTTTTGTAGTTGTTTCCCTCTCCTGAAGGCAAGAGGATTGACCAGGATTTCTTCCTTCAGAGGATGCTTAGAAGCAGCAATAAGTGCAAAAGACACACAATCAGTTTTGTGAGCGTGTGTTTTGTTAGACATTAGGTAAATGAAATTGCAGGGAATTCTTGAGATCAGTGACCCTATTAGCAAATTCAGGGGTTTTAGCAaaaggtctttttttaaaatcaagtgATGGGAATCAGAATTAATCCTATTTGCCTcataatgaacaaaaaaatgacagacgCTGCACATTTGTGTGGCGTTTGCAGGTGGAGACTGGTGTATCTATAGCTTTGTTTGGTGAAGGTAAAGTGGTATTGATAGTATTGTTGACAAATGAGTGAACTCGTGTCCTCTTTTTGTCTAATTTATgtttgctggttttttttttgtttttgtttttgttttttgttttaacattcTTTAAGCATTGTGATTTCAGGAAACAGAAAACACTTTGCATCAACAAGCTCGAATAGTGCCATGAAAGTCACAATTGGTTTGTTGAGGCGTTAAAAACCCAATTAATATGTTTGGgaagtgagcaaaaaaaaaaaaggtcaattaAGTGCAATTCAAACTGCTGATTTACAAAGCAAATGAGCTTTTCTGTTTGCTGGAAGCGATAGTGTTGTGTTATTCAGCTAGCTGATAACTTTATACAGTCATATTGTGTTCAGTATTGATCCGCGAGGAGAGTTTGATacctttatataaaataatgacttCATCCATATGTTggtatttatttgaaatgttttacagtACTGTTATCAATAATGTGCATTATGATTGATTAGTGGTGGAAAAACGTCATATGCATGTAATTCTTCAGCCATGGAACTTTTACACAGAACGGAAAACAAACCACTTGAAACAGGCTCTAAATGAAAAAGAGGGGGGAAGAAGAATTAAATTGataaaagaaatgtgtttagCTATTAAGTGATGTATTACCACTGAACTAACCAAGAaaaagtgttgttttgttttccttaGAGGGATACTCGTCTGTGTAAAGGTAGTCatgctggttaaaaaaaatcaataaaaaggACTAAAATATTG

Function

NR:

description
PREDICTED: protein bicaudal D homolog 2-like isoform X1

GO: NA

KEGG:

id description
K18739 BICD; protein bicaudal D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925264.2 True 8058 mRNA 0.44 10 21567910 21616083

Neighbor

gene id symbol gene type direction distance location
mib2 mib2 coding upstream 5340 21489384 ~ 21562570 (+)
ubiad1 ubiad1,LOC107718257,LOC107572294 coding upstream 82953 21481381 ~ 21484957 (+)
cdk11b LOC107575169,LOC107718258,LOC108265382 coding upstream 111187 21438250 ~ 21456723 (+)
LOC113533389 slc35e2b,s35e2,LOC108265386 coding upstream 131957 21416892 ~ 21435953 (+)
nadka nadk coding upstream 173234 21368806 ~ 21394676 (+)
fgd fgd3 coding downstream 7902 21623985 ~ 21672425 (+)
LOC113533228 NA coding downstream 58653 21674736 ~ 21687440 (+)
trnaa-ugc_2 NA coding downstream 72041 21688124 ~ 21688195 (+)
trnaa-ugc_3 NA coding downstream 72437 21688520 ~ 21688591 (+)
trnat-cgu_3 NA coding downstream 73584 21689667 ~ 21689738 (+)
G136433 NA non-coding upstream 206030 21360839 ~ 21361880 (+)
G136429 NA non-coding upstream 220749 21346845 ~ 21347161 (+)
G136056 NA non-coding upstream 602442 20947304 ~ 20965468 (+)
G136057 NA non-coding upstream 628840 20937123 ~ 20939070 (+)
G135643 LOC107737118 non-coding upstream 1553140 20014522 ~ 20014770 (+)
G136466 NA non-coding downstream 58775 21674858 ~ 21693702 (+)
G136532 NA non-coding downstream 208906 21824989 ~ 21825322 (+)
G136544 NA non-coding downstream 223549 21839632 ~ 21839852 (+)
G137017 NA non-coding downstream 532540 22148623 ~ 22149777 (+)
G137057 angptl7,LOC107727987,LOC107679102,LOC107594962,LOC107738924,LOC107687132 non-coding downstream 688646 22304729 ~ 22307615 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other upstream 820054 20744580 ~ 20747856 (+)
LOC113533440 erc2,LOC108264953 other upstream 1125719 20222415 ~ 20442191 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other upstream 1382292 20180768 ~ 20185618 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other upstream 1665543 19825798 ~ 19902367 (+)
G135287 LOC108265174 other upstream 2065267 19487487 ~ 19502643 (+)
LOC113533123 LOC108265628 other downstream 165140 21781223 ~ 21797808 (+)
LOC113533434 creld1 other downstream 209599 21825682 ~ 21859668 (+)
LOC113533283 rbsn other downstream 476512 22092595 ~ 22123751 (+)
LOC113533405 NA other downstream 891543 22507626 ~ 22509494 (+)
LOC113533432 gpr153,LOC107693426 other downstream 978451 22594534 ~ 22636989 (+)

Expression


Co-expression Network