eif2s2 (eif2s2,if2b,LOC107739644,LOC107756850,LOC107566961,LOC108414623)


Basic Information

Item Value
gene id eif2s2
gene name eif2s2,if2b,LOC107739644,LOC107756850,LOC107566961,LOC108414623
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 23496631 ~ 23503510 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925266.2
TCATCATTACTCGTCGGAAGTACGCGTGCGCACTCGGGCTCCATTTGCTGATGCAAGACACTTATGGTAAAGAGGTTCAGTGCCATTTAGCTGTTTATTGTCACTAAGGCGCTTTTGAAGACACCAGTTTGATACAGCGACCATGTCAGAAGACGAGATCTTATTCGACCCCACCACGaccaagaaaaagaagaagaagaagaagccctTTATGCTTGATGAAGAAGGTGATGGACTCAGCGAGGAGACGCAGCAGGCCGAGCCTCGTGAGGCCGAGCCTGAGGCAGGAGAGGAGCGCGAGGTGGAgcctgaggaagaggaagggaagaaaaaagAGATCACAGATGACTTGGACGATTTAAATTTCTTCaatcagaagaaaaagaaaaagaagcccAAGAAAGTGTTTGACAATGACGTCGAAGAAGGCATGAAGGAGCTGAAGATTGAAGGTGAGCAGCCTGAAGTGATGGAAGATGATGACTTGGACCTGATGTTGCCagcgaagaagaagaagcccaAGAAGGTGGAATTTGTCGAGGATGGTGATATGGCTGAGAAGGACGACGCTCTGGAGGACGATGAGAGTAAAAATGCAGATGGTATCACGTTCAGCTCTCAGACTGGCCCAGCTTGGGCAGGTTCAGAGAGAGACTACACATACGacgagTTGCTAAGTCGCGTCTTTAAcatcatgagagagaaaaatccCGACATGGTGGCGGGAGAGAAGAGGAAGTTTGTCATGAAGCCACCTCAAGTGGTGCGAGTGGGAACAAAGAAAACATCTTTCGTCAACTTCACTGACATCTGCAAACTgTTGCATCGACAGCCAAAACATCTTTTGGCTTTCTTACTGGCGGAGTTGGGAACGAGCGGCTCCATAGATGGAAATAACCAGCTGGTGATCAAGGGGCGATTCCAGCAAAAACAAATAGAGAACGTCTTGAGAAGATACATCAAGGAATACGTGACCTGTCACACGTGCCGCTCTCCAGAGACCATCCTGCAGAAGGACACTCGGCTGTACTTCCTGCAGTGTGAGACGTGTCACTCACGCTGCTCTGTGGCCAGCATTAAAACAGGCTTCCAGGCCGTCACGGGCAAGAGAGCGCAACTCCGCGCCAAAGCCAACTAACGAGGCGACCTCTACTCTTTCTGATTCTCCTTTCCATTACCAAACTTTGCGCTGCCCCATATGGCTACTTCAACTGCTCAGTGCTAGCTTATTCTCAGTCATGGACTTTGAGTGAACTGGTGAAAAAGTTTAGAGTGGATTTTTGTTGTAatctaaaagaaaacattaaaatacaataagcaGGAGGGCTGGACAGCTTGAGCCACTGGTTTAACGAGTCACatcgtctctctttctcagaaaGACCACAGCTTTTGATTTAACAAAGTAGTGTGAGAAGCAGGGGGCCAGAGCATTTCAGACTCATGATTTATTTGCACATTGGTAGCAGATTTCGTTCTACTGTTTTGATTTCTTTGCAGGAATGGTGTAGGTGGAAATATGGGCAAGTGACCTGTGTGCTGTCTGCTCctgctttttaaaacagaacCACATCACAGACCTTTATGATGACTGATTGAGTTAGCTTTCTGTTAAGAGACCTGTaagcgacttttttttttttttttttttttttttttggggtcaAACAGGCTTCATATAGATTCCATTAAGTGTGTTTGGATTCAGCCTTGAGGATTTGGAGAGCTCTGCTACCTCTGTGATAAAACCCCGCTAGGAGTCTCGGGCTCTGGCTGCTGACTGCTATGCTTAGGATTTTGGTTGTTTACTGATTATCACACTGTTTAATGAAGGTGACATCCACATATTAGTTTCGAACATCTCTACACAACAGAACAATCCTGCACAATATTGAGAAATATTGTTGTATGATTGTGTAGgttgtttagaaaaaaaatatgggcCAGGAGATATTACAGTGCAGTGTTTCAGATAAAAGTAAGATGGGTGTCATtgtttaaaactgattttttaataaaaatgtactcTATAACAACAGTA

Function

symbol description
eif2s2 Predicted to enable mRNA binding activity; translation initiation factor activity; and translation initiation factor binding activity. Predicted to be involved in formation of cytoplasmic translation initiation complex and formation of translation preinitiation complex. Predicted to act upstream of or within translational initiation. Predicted to be part of eukaryotic translation initiation factor 2 complex. Orthologous to human EIF2S2 (eukaryotic translation initiation factor 2 subunit beta).

NR:

description
eukaryotic translation initiation factor 2 subunit 2-like

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03238 EIF2S2; translation initiation factor 2 subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925266.2 True 2041 mRNA 0.45 9 23496631 23503510

Neighbor

gene id symbol gene type direction distance location
LOC113533263 chmp4b,LOC108265407,LOC108414620,LOC103026801,LOC107573971,LOC107086700 coding upstream 754 23490838 ~ 23495877 (+)
LOC113533314 NA coding upstream 11765 23478294 ~ 23484866 (+)
LOC113533316 NA coding upstream 35205 23437236 ~ 23461426 (+)
LOC113533315 NA coding upstream 80268 23407805 ~ 23416363 (+)
LOC113533317 NA coding upstream 92638 23398609 ~ 23403993 (+)
LOC113533186 LOC108265406,LOC103023575,LOC108414617,LOC108433700,LOC100694607,LOC102788290,LOC103460371,LOC103156966 coding downstream 1574 23505084 ~ 23509854 (+)
LOC113533564 ywhaba,LOC103023259,LOC107708121,LOC108412308,LOC107584065,LOC108414621,LOC107595428 coding downstream 6680 23510190 ~ 23513559 (+)
eif2d eif2d coding downstream 31086 23534596 ~ 23546658 (+)
slc12a5b slc12a5b,LOC108442076,LOC108265753,LOC107550951,LOC105007608 coding downstream 69812 23573322 ~ 23640225 (+)
rbm39b LOC108265754,LOC108442077,LOC105906838,LOC105007609 coding downstream 139331 23642841 ~ 23651142 (+)
G137650 NA non-coding upstream 337124 23095798 ~ 23159507 (+)
G137651 NA non-coding upstream 392965 23100607 ~ 23103666 (+)
LOC113533633 NA non-coding upstream 490235 23002703 ~ 23006396 (+)
G137626 NA non-coding upstream 533277 22963131 ~ 22963354 (+)
G137613 NA non-coding upstream 543336 22951965 ~ 22953295 (+)
G138014 NA non-coding downstream 243953 23747463 ~ 23750368 (+)
G138176 NA non-coding downstream 486388 23989898 ~ 23990097 (+)
G138239 NA non-coding downstream 618100 24121610 ~ 24124569 (+)
G138280 NA non-coding downstream 859439 24362949 ~ 24363761 (+)
G138535 NA non-coding downstream 998576 24502086 ~ 24502371 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other upstream 234640 23248348 ~ 23261991 (+)
LOC113533432 gpr153,LOC107693426 other upstream 859642 22594534 ~ 22636989 (+)
LOC113533405 NA other upstream 987137 22507626 ~ 22509494 (+)
LOC113533283 rbsn other upstream 1372880 22092595 ~ 22123751 (+)
LOC113533434 creld1 other upstream 1636963 21825682 ~ 21859668 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other downstream 11076 23514586 ~ 23524705 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other downstream 246907 23750417 ~ 23757114 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other downstream 386906 23890416 ~ 23894725 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 508072 24011582 ~ 24013781 (+)
LOC113533115 gnrh1 other downstream 1629231 25132741 ~ 25134258 (+)

Expression


Co-expression Network