LOC113533263 (chmp4b,LOC108265407,LOC108414620,LOC103026801,LOC107573971,LOC107086700)


Basic Information

Item Value
gene id LOC113533263
gene name chmp4b,LOC108265407,LOC108414620,LOC103026801,LOC107573971,LOC107086700
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 23490838 ~ 23495877 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925267.2
CGGGCCTGAAGGCGGAAGTCCGAGCATCAACAACCCCTAcgtcagtgatttttttttttaggagacagACGTGAACGTTGTTGAGgttaatttgtgtgttttaaacagaaacCTCTAGCTGCCATGTCTTTGTTTGGGAAGTTGTTCGGGAGCGGGGGGAAAGGGGACAAAGCCCCGAGTCCTCAGGATGCGATCCAGAAACTCCGCGAGACGGAGGAGATGTTGTCGAAGAAGCAGGAATTTTTGGAAAAGAAGATTGAGGCGGAACTGCTAACAGCGAAGAAGAACGGCACGAAAAACAAACGAGCTGCCCTCCAGGCCCTGAAGAGGAAGAAGCGTTATGAAAAGCAGCTGGCTCAGATCGACGGCACTCTGTCCACCATTGAGTATCAGCGAGACGCTTTGGAGAACGCCAACACTAACACAGAGGTGCTCAAGAACATGGGCCTCGCCGCCAAGGCCATGAAGAACGCTCACCAGAACATGGATATAGACAAAGTGGACGAGCTCATGCAGGACATCACAGAACAGCAGGAGCTGGCACAGGAGATCTCCGATGCTATTTCAAAACCAGTCGGCTTTGGAGAAGAGTTTGACGAGGATGAATTGCTCGCTGAACTGGAGGAGTTGGAACAGGAGGAATTGGACAATACCCTGCTGGAAATTGGTGGCCCAGAGAATGTCTCACTGCCCAGCGTGCCTTCAACCTCATTACCTTCCCAACCAGCTAAGAATAGAAAggaagaggatgaagatgatATGGAGGAGCTGAAAGCTTGGGCAATGTGAACCAAGCCCAAACATCCGGACTGTCTAATCACTCGCTGTGGTGGACTGATGTTCAGAGTCGACTCGAACACCTTCGGAGAGTTAACGTTGCAAAAACAATTGTCTAGGAAATTGTAGCTCCAATTAATGGCTTAGGtccagaaacaaaacaaacaaacaaacaaaaaaaactgtccatAGGGATGTAAAGGAGGctatgaaagcaaaacaaacaatcaGATGAAATTTTATTCGTGAAACAATTTGGCTAAGGTTTGTTTATGGATATTTTGATGTTCTTCTCCTATTGTTGCTCATTTTCCCTTTTGAAATTGGAATGTAATCATACTGAACCCACTTAGACATCTACCTCTATCTGTTTATTAAACACCTACAGCAAGTGGGATTCATGTCATCCCCATAGTCTGTTTGGTAAGTATCAGGATTACGCCAATCCACTCATAGCTTTGTGTTTTCATGGTGATGACATCACTTGTGTATATACAAGCATCGCGTCTTTTGCATGCTTGATTTGAGAGCCTCCATTTTAAAGCATCTCCACTGACTGTTATGATACAGGGAATAGTTTTGGGTCTGATAATATTCTAAGGTTGATCTCAAAGTGCTTTTGTTTTAGAAGCTTTATTTAAACATCCAGAGTtgttttgatatatatatattttttttatatttcattgaTCATAGATTCTTACatcaaaaaaagatttaaaaaatgcatcacAAATAGTTACAGCCCACAATTTCTTCACTGACATCTCAACAAAGTGCTGTATCTTACCTGAAACTATCCTGCTGAAATCTCAAAGCACGTCAATCTGATGTATCACTTTTCATTAGGGTGGAAGGGTtataaagttggaagcaaacTCTAAAgctaatttgtttatttgaaaaGATCCCTAGGAATACATGGACTTACTATATCTTTTGTAAAGAACCTGAAATGTAACAGCAAGGTGTGTCATGTGTACATTTGTATGTTTGAGATTATTCAGATAAGACTTTTATTTGAGAGATCATTAAAATGTTCGATTCTT

Function

symbol description
chmp4b Enables protein homodimerization activity. Involved in several processes, including midbody abscission; mitotic nuclear division; and regulation of organelle assembly. Located in several cellular components, including cytoplasmic side of plasma membrane; midbody; and nuclear envelope. Part of ESCRT III complex and membrane coat. Implicated in cataract 31 multiple types.

NR:

description
PREDICTED: charged multivesicular body protein 4c

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0031902 late endosome membrane cellular_component

KEGG:

id description
K12194 CHMP4A_B, SNF7, VPS32A_B; charged multivesicular body protein 4A/B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925267.2 True 1826 mRNA 0.42 5 23490838 23495877

Neighbor

gene id symbol gene type direction distance location
LOC113533314 NA coding upstream 5972 23478294 ~ 23484866 (+)
LOC113533316 NA coding upstream 29412 23437236 ~ 23461426 (+)
LOC113533315 NA coding upstream 74475 23407805 ~ 23416363 (+)
LOC113533317 NA coding upstream 86845 23398609 ~ 23403993 (+)
LOC113533428 NA coding upstream 100103 23367426 ~ 23390735 (+)
eif2s2 eif2s2,if2b,LOC107739644,LOC107756850,LOC107566961,LOC108414623 coding downstream 754 23496631 ~ 23503510 (+)
LOC113533186 LOC108265406,LOC103023575,LOC108414617,LOC108433700,LOC100694607,LOC102788290,LOC103460371,LOC103156966 coding downstream 9207 23505084 ~ 23509854 (+)
LOC113533564 ywhaba,LOC103023259,LOC107708121,LOC108412308,LOC107584065,LOC108414621,LOC107595428 coding downstream 14313 23510190 ~ 23513559 (+)
eif2d eif2d coding downstream 38719 23534596 ~ 23546658 (+)
slc12a5b slc12a5b,LOC108442076,LOC108265753,LOC107550951,LOC105007608 coding downstream 77445 23573322 ~ 23640225 (+)
G137650 NA non-coding upstream 331331 23095798 ~ 23159507 (+)
G137651 NA non-coding upstream 387172 23100607 ~ 23103666 (+)
LOC113533633 NA non-coding upstream 484442 23002703 ~ 23006396 (+)
G137626 NA non-coding upstream 527484 22963131 ~ 22963354 (+)
G137613 NA non-coding upstream 537543 22951965 ~ 22953295 (+)
G138014 NA non-coding downstream 251586 23747463 ~ 23750368 (+)
G138176 NA non-coding downstream 494021 23989898 ~ 23990097 (+)
G138239 NA non-coding downstream 625733 24121610 ~ 24124569 (+)
G138280 NA non-coding downstream 867072 24362949 ~ 24363761 (+)
G138535 NA non-coding downstream 1006209 24502086 ~ 24502371 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other upstream 228847 23248348 ~ 23261991 (+)
LOC113533432 gpr153,LOC107693426 other upstream 853849 22594534 ~ 22636989 (+)
LOC113533405 NA other upstream 981344 22507626 ~ 22509494 (+)
LOC113533283 rbsn other upstream 1367087 22092595 ~ 22123751 (+)
LOC113533434 creld1 other upstream 1631170 21825682 ~ 21859668 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other downstream 18709 23514586 ~ 23524705 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other downstream 254540 23750417 ~ 23757114 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other downstream 394539 23890416 ~ 23894725 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 515705 24011582 ~ 24013781 (+)
LOC113533115 gnrh1 other downstream 1636864 25132741 ~ 25134258 (+)

Expression


Co-expression Network