rbm39b (LOC108265754,LOC108442077,LOC105906838,LOC105007609)


Basic Information

Item Value
gene id rbm39b
gene name LOC108265754,LOC108442077,LOC105906838,LOC105007609
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 23642841 ~ 23651142 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925342.2
GGAAGTTGTATACATAAGGTGAACTTATAAACAAGTCTAGCTAGCAAACTACCTCAGATAGCTAGCGTAATTCTGTTGCAGAGTGTgaagaataataacaatatttttgtttatagtttgTGTATTTGGTGTTTAATAATTACAGCTAAGAAAACGTAGATTTACCGGACTTTGAAGAGCCTAAGTGAAGAGGAAACGATAACTAGTTACATAGCTAGCATTATTTGTCTTGTATGTTGCTAGCGAGCTAGTTCGCACCAATACCGCATCGCGACGATTTCTACAGACACAACAGCAAGCGTGCAGGTCTCCAATGGCAGACGACTTTGATATCGAGGCGATGCTTGAAGCGCCTTACAGGAAGGGTGACAGCAAATCCTATAGTGCAAACGGCTATGAAGAGCACAGCAGGAAGAAAAGGCACAGTCGGAGTCGCAGCCCAAGTGCAGAACGCCGCAGGAGTAGGAGCAGAGAGCGCAAGAAGGGCAGAGACAAGCGTAAGAGCCGCAGCCGGGAGAAGAAGAGATCGCGTAGCAAAGAGCGCCGTTCTCGAAGTCATGAACGGCATGGACGTTATCGAGGTCACAGAAGCCCCCACCGCAAACGCTCTCGAAGCAAGAGCCCGTTTAAGAAAGAGAAGAGTCCAATCAGGAAACCTATTGATAATCTTagtgcagaggagagagatgcCCGCACAGTATTCTGCATGCAGCTGGCTGCCAGAATCAGACCCAGAGACCTAGAGGAGTTCTTCTCTGCTGTGGGCAAAGTGCGTGATGTGAGGATGATTTCAGACAGAAACTCTCGCAGATCTAAGGGTATTGCATATGTTGAGTTTGTGGAGGCCACCTCTGTGCCCCTGGCTATTGGACTGACAGGACAGAGGCTGCTGGGAGTGCCAATCATTGTTCAGGCCTCGCAGGCCGAGAAAAACAGAGCAGCAGCGGCAGCAGCAGCCCTTAACCTGCAGAAAGGCAGCGCGGGGCCAATGCGGCTCTATGTGGGCTCCCTGCACTTCAACATCACAGAGGAAATGCTCAGAGGCATATTCGAGCCCTTTGGGAGGATTGAAAGCATCCAGTTGATCATGGACAGCGAGACAGGCAGGTCAAAAGGTTACGGCTTTATATCGTTTGCAGATGCTGAATGTGCAAAGAGGGCCTTAGAGCAGCTGAACGGATTTGAGCTGGCTGGCCGGCCCATGAAGGTGGGTCATGTGACAGAGCGCTCAGACGGCTCATCAGCCAGTTCCTTCTTGGACAACGATGAGCTAGAGAGAACCGGCATCGACTTGGGTACCACGGGCCGCTTGCAGCTGATGGCTCGACTTGCAGAAGgtaCAGGGCTACAGATTCCTGCAGCTGCAAAGCAGGCTCTGCAGATGAGCGGATCCATGCCATTTGGTAACCTTCCTGGAGTGATCCCTGCACCAAGCATGAACCAGGCCATGAACCTCCCCACCCAGCCCCTGGCCACTCACTGCCTACAGCTCTCCAACATGTTCAGCCCACAGTCAGAAAACGAGCCTGGCTGGGATATAGAGATTCAGGATGATGTCATTGAAGAGTGCAATAAACATGGAGGTGTTGTTCACATATATGTAGACAAGAATTCTCCCCAAGgtaatgtgtatgtgaagtGTCCGTCTATCCCGGCCGCCATGGCTGCCGTCAGTGCCCTACATGGACGCTGGTTTGCAGGCAAAATGATCACCGCTGCCTACGTGCCCCTCCCAACCTACCACAACCTGTTCCCTGACTCAGTCACAGCCATCCAGCTGCTGAGACCCACACGCCGGTGATCCACACTCCTGCTGCCCAGTCCAATTCTTctgactctctctgtgtctctgcatATCCCAGAGATGCAGACGTCACCCTGCCCTTTTAAGGACAGCTGCTGTCTGTCCCTGGAGGTCCATAGCACATTGTAGATCTCAGACACACAGTTGCCTGAGGGTGTAGATGAAAGCTGGCTGGtctaggtta
>XM_034306691.1
GGAAGTTGTATACATAAGGTGAACTTATAAACAAGTCTAGCTAGCAAACTACCTCAGATAGCTAGCGTAATTCTGTTGCAGAGTGTgaagaataataacaatatttttgtttatagtttgTGTATTTGGTGTTTAATAATTACAGCTAAGAAAACGTAGATTTACCGGACTTTGAAGAGCCTAAGTGAAGAGGAAACGATAACTAGTTACATAGCTAGCATTATTTGTCTTGTATGTTGCTAGCGAGCTAGTTCGCACCAATACCGCATCGCGACGATTTCTACAGACACAACAGCAAGCGTGCAGGTCTCCAATGGCAGACGACTTTGATATCGAGGCGATGCTTGAAGCGCCTTACAGGAAGACTTGCCTAATGATATCTCATCTCTACTTCCCTGAATACACCTTTGATTccagtgtgaagtgtgaaaaaaGGTGACAGCAAATCCTATAGTGCAAACGGCTATGAAGAGCACAGCAGGAAGAAAAGGCACAGTCGGAGTCGCAGCCCAAGTGCAGAACGCCGCAGGAGTAGGAGCAGAGAGCGCAAGAAGGGCAGAGACAAGCGTAAGAGCCGCAGCCGGGAGAAGAAGAGATCGCGTAGCAAAGAGCGCCGTTCTCGAAGTCATGAACGGCATGGACGTTATCGAGGTCACAGAAGCCCCCACCGCAAACGCTCTCGAAGCAAGAGCCCGTTTAAGAAAGAGAAGAGTCCAATCAGGAAACCTATTGATAATCTTagtgcagaggagagagatgcCCGCACAGTATTCTGCATGCAGCTGGCTGCCAGAATCAGACCCAGAGACCTAGAGGAGTTCTTCTCTGCTGTGGGCAAAGTGCGTGATGTGAGGATGATTTCAGACAGAAACTCTCGCAGATCTAAGGGTATTGCATATGTTGAGTTTGTGGAGGCCACCTCTGTGCCCCTGGCTATTGGACTGACAGGACAGAGGCTGCTGGGAGTGCCAATCATTGTTCAGGCCTCGCAGGCCGAGAAAAACAGAGCAGCAGCGGCAGCAGCAGCCCTTAACCTGCAGAAAGGCAGCGCGGGGCCAATGCGGCTCTATGTGGGCTCCCTGCACTTCAACATCACAGAGGAAATGCTCAGAGGCATATTCGAGCCCTTTGGGAGGATTGAAAGCATCCAGTTGATCATGGACAGCGAGACAGGCAGGTCAAAAGGTTACGGCTTTATATCGTTTGCAGATGCTGAATGTGCAAAGAGGGCCTTAGAGCAGCTGAACGGATTTGAGCTGGCTGGCCGGCCCATGAAGGTGGGTCATGTGACAGAGCGCTCAGACGGCTCATCAGCCAGTTCCTTCTTGGACAACGATGAGCTAGAGAGAACCGGCATCGACTTGGGTACCACGGGCCGCTTGCAGCTGATGGCTCGACTTGCAGAAGgtaCAGGGCTACAGATTCCTGCAGCTGCAAAGCAGGCTCTGCAGATGAGCGGATCCATGCCATTTGGTAACCTTCCTGGAGTGATCCCTGCACCAAGCATGAACCAGGCCATGAACCTCCCCACCCAGCCCCTGGCCACTCACTGCCTACAGCTCTCCAACATGTTCAGCCCACAGTCAGAAAACGAGCCTGGCTGGGATATAGAGATTCAGGATGATGTCATTGAAGAGTGCAATAAACATGGAGGTGTTGTTCACATATATGTAGACAAGAATTCTCCCCAAGgtaatgtgtatgtgaagtGTCCGTCTATCCCGGCCGCCATGGCTGCCGTCAGTGCCCTACATGGACGCTGGTTTGCAGGCAAAATGATCACCGCTGCCTACGTGCCCCTCCCAACCTACCACAACCTGTTCCCTGACTCAGTCACAGCCATCCAGCTGCTGAGACCCACACGCCGGTGATCCACACTCCTGCTGCCCAGTCCAATTCTTctgactctctctgtgtctctgcatATCCCAGAGATGCAGACGTCACCCTGCCCTTTTAAGGACAGCTGCTGTCTGTCCCTGGAGGTCCATAGCACATTGTAGATCTCAGACACACAGTTGCCTGAGGGTGTAGATGAAAGCTGGCTGGtctaggtta

Function

NR:

description
PREDICTED: RNA-binding protein 39-like

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13091 RBM23_39; RNA-binding protein 23/39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925342.2 False 1988 mRNA 0.51 15 23642841 23651142
XM_034306691.1 True 2058 mRNA 0.51 16 23642841 23651142

Neighbor

gene id symbol gene type direction distance location
slc12a5b slc12a5b,LOC108442076,LOC108265753,LOC107550951,LOC105007608 coding upstream 2616 23573322 ~ 23640225 (+)
eif2d eif2d coding upstream 96183 23534596 ~ 23546658 (+)
LOC113533564 ywhaba,LOC103023259,LOC107708121,LOC108412308,LOC107584065,LOC108414621,LOC107595428 coding upstream 129282 23510190 ~ 23513559 (+)
LOC113533186 LOC108265406,LOC103023575,LOC108414617,LOC108433700,LOC100694607,LOC102788290,LOC103460371,LOC103156966 coding upstream 132987 23505084 ~ 23509854 (+)
eif2s2 eif2s2,if2b,LOC107739644,LOC107756850,LOC107566961,LOC108414623 coding upstream 139331 23496631 ~ 23503510 (+)
zgc:162200 LOC108265478,LOC108442080 coding downstream 31115 23682257 ~ 23703120 (+)
si:ch211-218o21.4 LOC108265477 coding downstream 54926 23706068 ~ 23711315 (+)
renbp renbp,LOC107683888,LOC107747208,LOC107702837,LOC107725049 coding downstream 60500 23711642 ~ 23720857 (+)
gpkow gpkow,LOC107702823,LOC107575438,LOC107564457 coding downstream 215715 23866857 ~ 23877386 (+)
timm17b timm17b,LOC107722912 coding downstream 232009 23883151 ~ 23889055 (+)
G137650 NA non-coding upstream 483334 23095798 ~ 23159507 (+)
G137651 NA non-coding upstream 539175 23100607 ~ 23103666 (+)
LOC113533633 NA non-coding upstream 636445 23002703 ~ 23006396 (+)
G137626 NA non-coding upstream 679487 22963131 ~ 22963354 (+)
G137613 NA non-coding upstream 689546 22951965 ~ 22953295 (+)
G138014 NA non-coding downstream 96321 23747463 ~ 23750368 (+)
G138176 NA non-coding downstream 338756 23989898 ~ 23990097 (+)
G138239 NA non-coding downstream 470468 24121610 ~ 24124569 (+)
G138280 NA non-coding downstream 711807 24362949 ~ 24363761 (+)
G138535 NA non-coding downstream 850944 24502086 ~ 24502371 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other upstream 118136 23514586 ~ 23524705 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other upstream 380850 23248348 ~ 23261991 (+)
LOC113533432 gpr153,LOC107693426 other upstream 1005852 22594534 ~ 22636989 (+)
LOC113533405 NA other upstream 1133347 22507626 ~ 22509494 (+)
LOC113533283 rbsn other upstream 1519090 22092595 ~ 22123751 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other downstream 99275 23750417 ~ 23757114 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other downstream 239274 23890416 ~ 23894725 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 360440 24011582 ~ 24013781 (+)
LOC113533115 gnrh1 other downstream 1481599 25132741 ~ 25134258 (+)
egr3 egr3 other downstream 1900752 25551894 ~ 25558731 (+)

Expression


Co-expression Network