parapinopsina (LOC100304471,LOC108411942)


Basic Information

Item Value
gene id parapinopsina
gene name LOC100304471,LOC108411942
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 20704500 ~ 20733204 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925411.2
TCAGGCAGCGCCAAAAGAGCGCGCGAGAGCCAAACCAACTGGGGAAAGAGTGGAGGGGGGACATACACAGACGAAAAAGAATGACGGAGCTCGTCTAGTCGTTAGTTTATTCTTTCTTCGGTTACTGTCTCTCCAAGAATGATACAAACGACTCGgAGAATGATAAAGCAATCAAGAAGAGTACAGTCATAGATCTCAGAAAGAATAAGCTGGTAGAATAATTCCATGGACAATCCGGATCTAAGGATTTTCTCTGCTTATGTCACATATGCTTAAAAGCCTTTTTTGGTGGAACAGTTGTCCATAAAAACCAAGGATGGATCCCATATGACCTCATCAGAGTAAGCTTATTATGGCACTGGCTGACAAACCCTGAACTACCAGATCTTTCTTGAGCTTCTTTGCTGtgaatcaaaaagaaaaaatggcatccattcatctatccaaCTTTTCAGAGGCTGACACAATGCATCAAGGCTCAGTAAATGATCACATCATGCCAAGAATAGGCTACACAATCTTGGCAATCATTATGGCTTTGTTCTCTACTTGTGGCATCATCTTGAATATGGTGGTGATTATTGTGACAATGAGGTACAAACAACTGCGTCAGCCACTAAACTATGCTCTGGTTAATCTAGCAGTGGCTGATCTTGGTTGCGCTGTGTTTGGGGGGCTACTCACGGCAGTCACCAATGCCATGGGCTACTTCAGTCTTGGCAGGATAGGATGTGTTTTGGAAGGCTTTGCTGTTGCCTTCTTTGGTATTGCTGGTTTGTGCTCAGTTGCGGTTATCGCTGTTGACCGCTACATGGTGGTATGCAGACCACTGGGCACAGTGATGTTCCAAACCAAACATGCCCTGGCAGGTGTGGTCTTATCCTGGGTCTGGTCTCTCATTTGGAACACGCCACCACTGTTTGGATGGGGCAGTTACGAACTGGAAGGGGTGATGACCTCCTGTGCCCCCAACTGGTATAGCAGAGACCCAGTCAATGTCTCCTACATCCTGTGCTACTTCATGCTCTGTTTTGCTCTGCCTTTTGCCACCATTATCTTCTCTTACATGCACCTCCTTTATACCTTACGACAGGTGGCTAAGCTGCAAGTGGCAGAATGTGGAAGCACGGCCAAGGCTGAGGTTCAGGTGGCCCGTATGGTGGTCGTCATGGTCATGGCCTTTTTGCTTACATGGCTGCCATATGCAGCCGTTGCCCTGATTGTGATAATTGATTCCAACATCTACATCAACCCAGTGATTGCCACAATACCAGCCTACCTGGCCAAGAGCAGCAATGTCTTCAACCCcatcatttatatattcatgaaCAGACagTTCAGGGACTATGCTTTGCCTTATCTCTTCTGTGGAAAAAACCCTTGGGCATCCAAAGAAGAAGGAGAATCAGGCATCAATACGTTAATTACTACAGTCAGCAAGAGCAGCTCAGTGTCACCATTATAACCATAAATATCAAAGTATTATAAcctaaaataatcaaatactcaattattttctttgttgtatGTATAATGTTTGTGAATATTTGGCAGTGTAGTTTACGTCTGGAATTTATtttggctggatatttttgATGAATAGTTTAGTTTCTGCTACACTTTTATCAGAAATTGGCAA
>XM_026925412.1
CTTTCTGGGAACCAAGTAGCACTTGCActatataatctttatattttacatagAGAATGATAAAGCAATCAAGAAGAGTACAGTCATAGATCTCAGAAAGAATAAGCTGGTAGAATAATTCCATGGACAATCCGGATCTAAGGATTTTCTCTGCTTATGTCACATATGCTTAAAAGCCTTTTTTGGTGGAACAGTTGTCCATAAAAACCAAGGATGGATCCCATATGACCTCATCAGAGTAAGCTTATTATGGCACTGGCTGACAAACCCTGAACTACCAGATCTTTCTTGAGCTTCTTTGCTGtgaatcaaaaagaaaaaatggcatccattcatctatccaaCTTTTCAGAGGCTGACACAATGCATCAAGGCTCAGTAAATGATCACATCATGCCAAGAATAGGCTACACAATCTTGGCAATCATTATGGCTTTGTTCTCTACTTGTGGCATCATCTTGAATATGGTGGTGATTATTGTGACAATGAGGTACAAACAACTGCGTCAGCCACTAAACTATGCTCTGGTTAATCTAGCAGTGGCTGATCTTGGTTGCGCTGTGTTTGGGGGGCTACTCACGGCAGTCACCAATGCCATGGGCTACTTCAGTCTTGGCAGGATAGGATGTGTTTTGGAAGGCTTTGCTGTTGCCTTCTTTGGTATTGCTGGTTTGTGCTCAGTTGCGGTTATCGCTGTTGACCGCTACATGGTGGTATGCAGACCACTGGGCACAGTGATGTTCCAAACCAAACATGCCCTGGCAGGTGTGGTCTTATCCTGGGTCTGGTCTCTCATTTGGAACACGCCACCACTGTTTGGATGGGGCAGTTACGAACTGGAAGGGGTGATGACCTCCTGTGCCCCCAACTGGTATAGCAGAGACCCAGTCAATGTCTCCTACATCCTGTGCTACTTCATGCTCTGTTTTGCTCTGCCTTTTGCCACCATTATCTTCTCTTACATGCACCTCCTTTATACCTTACGACAGGTGGCTAAGCTGCAAGTGGCAGAATGTGGAAGCACGGCCAAGGCTGAGGTTCAGGTGGCCCGTATGGTGGTCGTCATGGTCATGGCCTTTTTGCTTACATGGCTGCCATATGCAGCCGTTGCCCTGATTGTGATAATTGATTCCAACATCTACATCAACCCAGTGATTGCCACAATACCAGCCTACCTGGCCAAGAGCAGCAATGTCTTCAACCCcatcatttatatattcatgaaCAGACagTTCAGGGACTATGCTTTGCCTTATCTCTTCTGTGGAAAAAACCCTTGGGCATCCAAAGAAGAAGGAGAATCAGGCATCAATACGTTAATTACTACAGTCAGCAAGAGCAGCTCAGTGTCACCATTATAACCATAAATATCAAAGTATTATAAcctaaaataatcaaatactcaattattttctttgttgtatGTATAATGTTTGTGAATATTTGGCAGTGTAGTTTACGTCTGGAATTTATtttggctggatatttttgATGAATAGTTTAGTTTCTGCTACACTTTTATCAGAAATTGGCAA
>XM_034306776.1
TCAGGCAGCGCCAAAAGAGCGCGCGAGAGCCAAACCAACTGGGGAAAGAGTGGAGGGGGGACATACACAGACGAAAAAGAATGACGGAGCTCGTCTAGTCGTTAGTTTATTCTTTCTTCGGTTACTGTCTCTCCAAGAATGATACAAACGACTCGggtatttatctttttttttacttcgaCTTCTGACGCAGCCGAGCCGTTGTCAGAAACGGGAAACTCGCTGGAGTGTATCGTCTCTCTCAGCTCTCATGATGACATGAGACACACTGGCGAAAAATGAGGCAAAAATTATGCTAACGTCTTGACCACTCACAACGAGACGCAGATTAAGGAAGGACAACGAACagagttaaaaatgaaatgtaaaaggCTTAACTAGAATGATAAAGCAATCAAGAAGAGTACAGTCATAGATCTCAGAAAGAATAAGCTGGTAGAATAATTCCATGGACAATCCGGATCTAAGGATTTTCTCTGCTTATGTCACATATGCTTAAAAGCCTTTTTTGGTGGAACAGTTGTCCATAAAAACCAAGGATGGATCCCATATGACCTCATCAGAGTAAGCTTATTATGGCACTGGCTGACAAACCCTGAACTACCAGATCTTTCTTGAGCTTCTTTGCTGtgaatcaaaaagaaaaaatggcatccattcatctatccaaCTTTTCAGAGGCTGACACAATGCATCAAGGCTCAGTAAATGATCACATCATGCCAAGAATAGGCTACACAATCTTGGCAATCATTATGGCTTTGTTCTCTACTTGTGGCATCATCTTGAATATGGTGGTGATTATTGTGACAATGAGGTACAAACAACTGCGTCAGCCACTAAACTATGCTCTGGTTAATCTAGCAGTGGCTGATCTTGGTTGCGCTGTGTTTGGGGGGCTACTCACGGCAGTCACCAATGCCATGGGCTACTTCAGTCTTGGCAGGATAGGATGTGTTTTGGAAGGCTTTGCTGTTGCCTTCTTTGGTATTGCTGGTTTGTGCTCAGTTGCGGTTATCGCTGTTGACCGCTACATGGTGGTATGCAGACCACTGGGCACAGTGATGTTCCAAACCAAACATGCCCTGGCAGGTGTGGTCTTATCCTGGGTCTGGTCTCTCATTTGGAACACGCCACCACTGTTTGGATGGGGCAGTTACGAACTGGAAGGGGTGATGACCTCCTGTGCCCCCAACTGGTATAGCAGAGACCCAGTCAATGTCTCCTACATCCTGTGCTACTTCATGCTCTGTTTTGCTCTGCCTTTTGCCACCATTATCTTCTCTTACATGCACCTCCTTTATACCTTACGACAGGTGGCTAAGCTGCAAGTGGCAGAATGTGGAAGCACGGCCAAGGCTGAGGTTCAGGTGGCCCGTATGGTGGTCGTCATGGTCATGGCCTTTTTGCTTACATGGCTGCCATATGCAGCCGTTGCCCTGATTGTGATAATTGATTCCAACATCTACATCAACCCAGTGATTGCCACAATACCAGCCTACCTGGCCAAGAGCAGCAATGTCTTCAACCCcatcatttatatattcatgaaCAGACagTTCAGGGACTATGCTTTGCCTTATCTCTTCTGTGGAAAAAACCCTTGGGCATCCAAAGAAGAAGGAGAATCAGGCATCAATACGTTAATTACTACAGTCAGCAAGAGCAGCTCAGTGTCACCATTATAACCATAAATATCAAAGTATTATAAcctaaaataatcaaatactcaattattttctttgttgtatGTATAATGTTTGTGAATATTTGGCAGTGTAGTTTACGTCTGGAATTTATtttggctggatatttttgATGAATAGTTTAGTTTCTGCTACACTTTTATCAGAAATTGGCAA
>XM_034306777.1
TCAGGCAGCGCCAAAAGAGCGCGCGAGAGCCAAACCAACTGGGGAAAGAGTGGAGGGGGGACATACACAGACGAAAAAGAATGACGGAGCTCGTCTAGTCGTTAGTTTATTCTTTCTTCGGTTACTGTCTCTCCAAGAATGATACAAACGACTCGggtatttatctttttttttacttcgaCTTCTGACGCAGCCGAGCCGTTGTCAGAAACGGGAAACTCGCTGGAGTGTATCGTCTCTCTCAGCTCTCATGATGACATGAGACACACTGGCGAAAAATGAGGCAAAAATTATGCTAACGTCTTGACCACTCACAACGAGACGCAGATTAAGGAAGGACAACGAACagagttaaaaatgaaatgtaaaaggCTTAACTTGGCTGATCTTGGTTGCGCTGTGTTTGGGGGGCTACTCACGGCAGTCACCAATGCCATGGGCTACTTCAGTCTTGGCAGGATAGGATGTGTTTTGGAAGGCTTTGCTGTTGCCTTCTTTGGTATTGCTGGTTTGTGCTCAGTTGCGGTTATCGCTGTTGACCGCTACATGGTGGTATGCAGACCACTGGGCACAGTGATGTTCCAAACCAAACATGCCCTGGCAGGTGTGGTCTTATCCTGGGTCTGGTCTCTCATTTGGAACACGCCACCACTGTTTGGATGGGGCAGTTACGAACTGGAAGGGGTGATGACCTCCTGTGCCCCCAACTGGTATAGCAGAGACCCAGTCAATGTCTCCTACATCCTGTGCTACTTCATGCTCTGTTTTGCTCTGCCTTTTGCCACCATTATCTTCTCTTACATGCACCTCCTTTATACCTTACGACAGGTGGCTAAGCTGCAAGTGGCAGAATGTGGAAGCACGGCCAAGGCTGAGGTTCAGGTGGCCCGTATGGTGGTCGTCATGGTCATGGCCTTTTTGCTTACATGGCTGCCATATGCAGCCGTTGCCCTGATTGTGATAATTGATTCCAACATCTACATCAACCCAGTGATTGCCACAATACCAGCCTACCTGGCCAAGAGCAGCAATGTCTTCAACCCcatcatttatatattcatgaaCAGACagTTCAGGGACTATGCTTTGCCTTATCTCTTCTGTGGAAAAAACCCTTGGGCATCCAAAGAAGAAGGAGAATCAGGCATCAATACGTTAATTACTACAGTCAGCAAGAGCAGCTCAGTGTCACCATTATAACCATAAATATCAAAGTATTATAAcctaaaataatcaaatactcaattattttctttgttgtatGTATAATGTTTGTGAATATTTGGCAGTGTAGTTTACGTCTGGAATTTATtttggctggatatttttgATGAATAGTTTAGTTTCTGCTACACTTTTATCAGAAATTGGCAA

Function

NR:

description
parapinopsin

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925411.2 False 1639 mRNA 0.44 5 20704500 20733204
XM_026925412.1 False 1536 mRNA 0.43 5 20705014 20733204
XM_034306776.1 True 1862 mRNA 0.44 5 20704500 20733204
XM_034306777.1 False 1374 mRNA 0.45 5 20704500 20733204

Neighbor

gene id symbol gene type direction distance location
LOC113533338 lrtm1 coding upstream 144304 20547305 ~ 20560196 (+)
wnt5a wnt5a,LOC108411772,LOC107553896,LOC107693599,LOC107750813 coding upstream 237074 20455304 ~ 20467426 (+)
tlr9 LOC108265704 coding upstream 488595 20209756 ~ 20215905 (+)
LOC113533362 apeh coding upstream 495155 20188800 ~ 20209345 (+)
bsna bsn,LOC108265177 coding upstream 533131 20051109 ~ 20171369 (+)
LOC113533337 LOC108265089,LOC108443054,LOC108263931 coding downstream 3056 20736260 ~ 20739234 (+)
actr8 actr8 coding downstream 15775 20748979 ~ 20757581 (+)
chdh chdh coding downstream 35846 20769050 ~ 20784068 (+)
dcp1a dcp1a coding downstream 165272 20898476 ~ 20909749 (+)
tkta tkt,LOC106571977 coding downstream 183619 20916823 ~ 20933688 (+)
G135643 LOC107737118 non-coding upstream 689730 20014522 ~ 20014770 (+)
G135641 NA non-coding upstream 691733 20012567 ~ 20012767 (+)
G135524 NA non-coding upstream 698792 20005119 ~ 20005708 (+)
G135466 NA non-coding upstream 987521 19716637 ~ 19716979 (+)
G135393 NA non-coding upstream 1000033 19704262 ~ 19704467 (+)
G136057 NA non-coding downstream 203919 20937123 ~ 20939070 (+)
G136056 NA non-coding downstream 214100 20947304 ~ 20965468 (+)
G136429 NA non-coding downstream 613641 21346845 ~ 21347161 (+)
G136433 NA non-coding downstream 627635 21360839 ~ 21361880 (+)
G136466 NA non-coding downstream 941654 21674858 ~ 21693702 (+)
LOC113533440 erc2,LOC108264953 other upstream 262309 20222415 ~ 20442191 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other upstream 518882 20180768 ~ 20185618 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other upstream 802133 19825798 ~ 19902367 (+)
G135287 LOC108265174 other upstream 1201857 19487487 ~ 19502643 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other upstream 2022568 18436185 ~ 18681932 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 11376 20744580 ~ 20747856 (+)
LOC113533123 LOC108265628 other downstream 1048019 21781223 ~ 21797808 (+)
LOC113533434 creld1 other downstream 1092478 21825682 ~ 21859668 (+)
LOC113533283 rbsn other downstream 1359391 22092595 ~ 22123751 (+)
LOC113533405 NA other downstream 1774422 22507626 ~ 22509494 (+)

Expression


Co-expression Network