LOC113533404


Basic Information

Item Value
gene id LOC113533404
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 8902248 ~ 8915811 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925547.2
cacacttgcCTTTGCCCACTTCTGCTCTGTCAGTGAGAAAACTCTAAAAGTTAAAATGTTGTTGGAACTTGCTGGTGTTCTGCACTTGATCTTTCTGATACACGCTCAAGGTTCCCCTTTTCAGAAACCCTGGGCTGTGACATGTGATGATGAAAGCATCTGTACATTGGAAACGTCGCATGTGTTCATTAagtgctcttacacacacatcaacatccACACTGTGATCTGGTTCAGTcctaaacagaaaaataaatggaagAATGAGAATTATCCAGAGGATCTAGCTTTGGACTCAGACTTTGCTGGGCGTGTGAATCACATAGAGACCCTAAACTCCAGCACGCTGTCAATAAGAGACGTGAGACTGGGAGACTCTGGAGAATATCGCTTCATGCTCGTCACAGCAAACGGAGAGAAATATCTCAGCTCGATAGCCGTGAATCTAACAGTGACagATCTGCAGGTGAGGATACATCCTGGCATCACAGAACAGGTATTAAATCTTACCTGTAGCACACATTGCAGACTGACTGCAAAATGGAACACCTGGTGGAAGAATGGCAAACGTATAAAAGCTCACCTAAATGCTGAGCCTCTTCTCTTATCTGCTGGTGATGGAGGCAGCTACTTCTGCTCACTCAAAACCAAAAATAAGGTGATCCATTCCCCTGCAGTATGTGTCTGGGAAAAGAATTGTTGGAATGTGATTTATGCACAGAGAAGAGTGTGTGCTTTCAAAGGTTCATCTGTGAACTTCCCCTGCACTTACTCATATCCCAGTGGACAAAAAGTCAATGAAAGCTACTGGATGTTCAATCAGAATGACGTGAGGCTCTTGGAGCAGTTTGCAGGTCGTGTGGAGTTTGTTGGAAATAAAGAGAATAACTGCACTCTAAGACTGACTGACCTTAAAGAGAGCGACTCTGGAGATTATCGCTTTCTCTTCACCACTGATACCACCCAGCCAGTCTTCAGTAGCTCACTCAGCATCCAGCTGATTGTTACAGaTGTTCAGGTCAGGGTGAGATCTGCCAACATGTCCGAGGGACAGACAGTAACACTGAGCTGTATCACCAGCTGTACTCTCCCTTACCATACATTAAGCTGGTACCAGAATGGCCAACGTGTAATGAACAAACTCACCAAACACAACAATATTTATCTGGATGTACTTAGCTACAAGGAAAAGGACAATTACACATGTGCTGTAAGAGTCATTGAAGCTAAGAGCTATACAGCAGCTTCAGGAGGTGATGGGTGGTGGATTCAGCATGCTATATGGGCAGGAGGGGGATTCATGGCTGTATTAACTCTACTTATTGCCGTTCAGCTTATCAGgAGGGCAAGACGAACAGAGAATGATACAGATATCCAGgCTGTAGAGGTTTCACTAACAGACACCTACACTTCTCTAAGCCCTGCAAACCGGTCCTCTGAGTACAGCACACTGTTTGCTTATTCAAGGATAACGAGCAGGACAGAAAGAGATGCACACAGTCAGgcTGCAAAGGCTTCGGGCAGTACGGTAGAGAGAAAAGTCTCAGACTCAGTGTATGAAAATGTAGAATGCAAGATGTAGAATTTAAGAACTGGTCCACATTCAATATACAAGTTTTGAACTGACCACACCACACATGATTTTAATTCAGTATGTAAAATGGAGTGTTAACAATTTAACTGATTGCAATTCCAAAATTTTGAATTGGGATTTAATCAATTCTAACATATGGTTTATAGTATAacctgtaataaaataatgtgtaatttatATCAAGTTGTTTCAATGTCAGcagtaaaacaacaacaaaataataattagtttaGCAGCAAAGAACATCCATCAGTTAAAAGTATACAAAAAACATGAATCTGGCACGTACAGCTATGAGACTTAAAGATAAGAATATAACGATACCAAAAATGATCAAACCAATACAAATCACAACACCTTAACTTGCGCAGACCATTTTAACATATTCTTTTAAGTCTTACTCCATgataaacaaatcaaacaatgatatattttaaaaaaaatacatgtgatatatgatatatatttatgtcATATTATATGTTTTGAATTCAATACATTTCAGTTTGATTTATATAGAGCTTTTTCACAATGGActttgtcacaaaacagctttacagatataaattgtataaatatgCTTACTTAAATTCAAATCCAAGGATGGTCCACATCAGATGTGACTGTATTTTTTACAATCCCACTCTCATCCCCTCCTGAAGGAATTACATTTTTGTATCTACCTGTGATATTTTCCATAAACCTATGCTAAATTggttctattttccaaaatataaacaaatatcaAATTAACACAGATTTAAACCACAGCGACCCTAATAAGGATAAAACATATATCGgagattaatgaatgaacaaaGTAAATGTGCCAGTGTTAATAAGCATTGCCTTTATTTATGGCCTTTATTTGCAGCATGGCcttgtgagcttcatatctgatctCACACTCCCGGCATCATGAGAGTAAAAATCCGTTCTCGAAGTACACCTCTAATATGCACCATACCTGAATGATAAACCTTTGTCACACCGCTCCATGTAATATGTCACTGATCCTCAAGAGGATCTTCCTCTACTGCCACTGGCTGATACCTCCTTTTTATCAGCGATTGTGATGCTGTGGACCTTTACTTTAATTTCGGTGTGACTGTTTGTCACCTTAATCTTGCACTGTTCCTTTACATTACCCTGCTGTTATTGTCTGCCTGTTTGAACTGCTTACCACTTTGGATCAGCTTTTTGGCTCTGGagtttgtgctttttatttaatttaataaagattCTTGCCATTC

Function

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925547.2 True 2847 mRNA 0.39 11 8902248 8915811

Neighbor

gene id symbol gene type direction distance location
ajap1 ajap1 coding upstream 360822 8483083 ~ 8541426 (+)
LOC113534163 LOC108265188,LOC108425021,LOC106518891 coding upstream 499701 8394989 ~ 8402547 (+)
si:dkey-72l14.3 LOC108265127,LOC107717507 coding upstream 600575 8299355 ~ 8301673 (+)
LOC113528372 fsbp coding upstream 779362 8117577 ~ 8122886 (+)
si:dkey-20d21.12 NA coding upstream 943031 7954723 ~ 7959217 (+)
sema3b sema3b,LOC107717529,LOC107556489,LOC107669651 coding downstream 34403 8950214 ~ 9002824 (+)
pym1 pym1,LOC102777374 coding downstream 250167 9165978 ~ 9169576 (+)
LOC113526950 LOC108266051 coding downstream 259288 9175099 ~ 9180830 (+)
mc3r mc3r,LOC108265186,LOC108425022,LOC103045867,LOC107751456 coding downstream 378569 9294380 ~ 9295483 (+)
adipor1b adipor1,adipor1b,LOC108425077,LOC107679819,LOC107594512,LOC107711855 coding downstream 595128 9510939 ~ 9519258 (+)
G129439 NA non-coding upstream 176360 8725452 ~ 8725888 (+)
G129440 NA non-coding upstream 178178 8723664 ~ 8724070 (+)
LOC117597837 NA non-coding upstream 185016 8679642 ~ 8717232 (+)
G129407 NA non-coding upstream 352266 8549769 ~ 8549982 (+)
G129401 NA non-coding upstream 356252 8545770 ~ 8545996 (+)
G129621 NA non-coding downstream 87658 9003469 ~ 9006784 (+)
G129704 NA non-coding downstream 196973 9112784 ~ 9123869 (+)
G129707 NA non-coding downstream 204127 9119938 ~ 9134935 (+)
G129805 LOC108265845 non-coding downstream 393692 9309503 ~ 9312451 (+)
G129831 NA non-coding downstream 408897 9324708 ~ 9337950 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 589592 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 930499 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 1040678 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 1471251 7424001 ~ 7430997 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other upstream 2090602 6756763 ~ 6811646 (+)
cebpb LOC108265421 other downstream 546277 9462088 ~ 9471279 (+)
LOC113532719 LOC108265185 other downstream 745004 9660815 ~ 9665693 (+)
G130390 NA other downstream 1442135 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 1628108 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 1767267 10683078 ~ 10696831 (+)

Expression


Co-expression Network