bin3 (bin3,LOC107665194,LOC107678406,LOC107710841)


Basic Information

Item Value
gene id bin3
gene name bin3,LOC107665194,LOC107678406,LOC107710841
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 25563821 ~ 25606864 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925568.2
gtgcactacttTTTGAACTGGTCTCCTATTGGGACTCTAACCCTAGACAACTTCCTCAGTTCCTGGTTACAGAGTTGTAGCTGGACAGGTAGAAAAGGCGATGTTTTTGGAAATAAAGTTGTGTTTCGCGGTTAAACTGGAGTAAACACCACACCATGAGCTGGATTCCATTTAAGATCGGGCAACCGAAGAAACAGATTGTTTCAAAGACGGTTGAAAGAGACTTCGAGCGGGAATATGAGAAGCTCCAGAAGTTGGAAGACCAAACAAAGAAGCTGCATAAAGACATGAAGAAAAGCACAGAGGCTGATATAGcaatGTCTAAAGCAGCTGTGAAGATCGCTGCAGACCTGCTGAGTAACCCGCTGTGCGAGCAGGACCAAGCCTTCCTGGAGTCTATGATGTCTCTGGATACAGCCATGAAACGAATGGAGGCATTCAACCAAGAGAAGgtCAATCAGATTCAGAAGACGGTGATTGATCCTCTAAAAAAgtacAGTAGTGTGTTCCCCAGTCTGAACATGGCAGTGAAGCGGAGAGAGCAGGCCTTGCAGGATTATAAGCGACTGCAGGCTAAAGTGGAGAAAtatgaggagaaggagaagactGGACCCATCATGGTCAAACTCCATCAGGCAAAGGAAGAGTTGAGGCCAGTCAGGGAGGATTTCGAAGCCAAGAATAAGCAACTGTTGGAAGAAATGCCCAAATTTTACAACAGCCGCATCGACTACTTTCAGCCGAGCTTCGAGGCGCTTATCCGAGCCCAGgtgGTGTACTTCACAGAGATGCACAAGATCTTCAGTGACCTGACAGATCAGATCGATCAAGGCGGCCTGACAGACCAAGAGCGAGAACAGCAGAACGAGACCAAGCTCAACGAACTGCGTGCTCTGTCTATCGTAGCAGATGACTGAAGAAAAAGCAGATCTCTCTTTGCcaggtttttttcctttatttgttcCATCAGATTGTTTGTCAATGATCAGACGTCAGTGGTATGGATTACCGAACGGCAGTGTAGATGTAATAAAGATGTAGAGAATATAACTTATTTGTTTTTCGACCTCCATTCTGAAGGTTGCTCTTCATCAgtctgtttatcttttttatctttttgtgATCTGGGTTATGGTTAGATTTCCAGTTTGTTTCATGATGATggtaaaaaaaagaggaagccTTCCTCAGgaatatacactacactatattaaCTTATACGAAGGGAGCTCAATTTCTGAAAAGTGAAGGATCTCACTGGTGAGTAGAACATCACTGCAGTTGTGCTTGTTCTTTAGGTATAAATTGTATTGAATGTACAGAAAAGGCAATACTTGACTAGAGCTTATCATTAGGAATCATGGTGTGTATGTCAAATGCGTGTAGCTCTGGCCTTTGGTCTGAGCACTAAACCCTGTCGTTTGCTCTAACGTCCCAGTCTGCGCACCATCACAGCAATTCTACAGCTCTTtctgaattaaaacaaaaaaatcatctctAAGTAAGCGATATCTAGTAATTTAATACTAGCatgaagtatttatttattgtttattgagTATTTAAATGGTGTCTGTAGTGAATTAAATTTGAGTGTGTGtcatattaaaatgtgttaccCGGTACTGTAGCGCCCTCTACTGACCcaaacaaaacactgaatttGCTCGTCTTTGTGTGTAGTGGTTGTAACAAAGTGTGTACTTTTTTGGCTACAGCCATAGAATTTCGGATTTTGGATGATGTACGATTGTATGCGGGACCAACCGTTGAAGAAGCCACAGCTATTTTCTTTCCTAATGTTACTTCACATCGTCGCCAAAGGAATAATGTTGAATTTTGAAGAGTTTTGGttctttgtgttttcagtgCTTCATCTCTGTCTTTAACAATGCCTCCATGTAATTTCTGTTGAAATATGTGCCTTTATATTCAGGATTTGGATTCTGACTTGTGACTGTCCTGATATCTGATCATCTCTTACTGCATTCAActctttttaatttgtttaccTGCTAAAACAggaggtttttgtgtgtgtattttaggaGTTGCGTTTGCTTCTTTGATTATAATTCTATGTACGTTTTAATTCTTATCATTTGTATTGATcacttttgtatttgttttgcaAAGTCGTACAATAAATTGGTTGTTGGTAAAAACCTGAAATAGAA

Function

symbol description
bin3 Predicted to contribute to lipid binding activity. Predicted to be involved in actin cortical patch localization; endocytosis; and plasma membrane tubulation. Predicted to be located in cytoplasm. Predicted to be active in actin cortical patch. Orthologous to human BIN3 (bridging integrator 3).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: bridging integrator 3-like

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K20120 BIN3; bridging integrator 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925568.2 True 2177 mRNA 0.41 9 25563821 25606864

Neighbor

gene id symbol gene type direction distance location
LOC113533497 pebp4 coding upstream 20233 25453639 ~ 25543588 (+)
LOC113533297 rhobtb2 coding upstream 116947 25435201 ~ 25446874 (+)
slc25a37 slc25a37,LOC107559458,LOC107710846,LOC107747712 coding upstream 272246 25276381 ~ 25291575 (+)
trnae-cuc_21 NA coding upstream 292141 25271609 ~ 25271680 (+)
entpd4 entpd4,LOC107710847,LOC107747713,LOC107698120 coding upstream 294372 25257998 ~ 25269449 (+)
b2ml b2m coding downstream 55930 25662794 ~ 25665298 (+)
ubl4a ubl4a,zgc:56596,LOC107665196,LOC107553161,LOC107562643 coding downstream 60061 25666925 ~ 25671900 (+)
si:dkey-32e23.4 si:dkey-32e23.4,LOC108426682,LOC108265374,LOC103036512,LOC107710834,LOC107562650,LOC107665195,LOC107678420 coding downstream 79341 25686205 ~ 25703125 (+)
disp3 disp3,LOC107710822,LOC107553125,LOC107678473,LOC107562651 coding downstream 156101 25762965 ~ 25804442 (+)
LOC113537824 NA coding downstream 310883 25917747 ~ 25919263 (+)
G138961 NA non-coding upstream 112244 25448615 ~ 25451577 (+)
LOC117597843 LOC108261789,LOC108265915 non-coding upstream 135633 25421054 ~ 25428188 (+)
LOC113533374 NA non-coding upstream 230208 25309905 ~ 25333613 (+)
G138907 NA non-coding upstream 278873 25277297 ~ 25284948 (+)
LOC113533216 NA non-coding upstream 714277 24848068 ~ 24849544 (+)
G139166 NA non-coding downstream 65654 25672518 ~ 25683091 (+)
G139172 NA non-coding downstream 203311 25810175 ~ 25815041 (+)
LOC113546140 NA non-coding downstream 341985 25948849 ~ 25950449 (+)
G139235 LOC108265343 non-coding downstream 425730 26032594 ~ 26036133 (+)
G139551 NA non-coding downstream 906028 26512892 ~ 26519482 (+)
egr3 egr3 other upstream 5090 25551894 ~ 25558731 (+)
LOC113533115 gnrh1 other upstream 429563 25132741 ~ 25134258 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1550040 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 1669096 23890416 ~ 23894725 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other upstream 1806707 23750417 ~ 23757114 (+)
LOC117597866 NA other downstream 302711 25909575 ~ 25916807 (+)
car15 LOC108264895 other downstream 793327 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 955956 26562820 ~ 26567932 (+)
rimbp2 rimbp2,LOC108414005 other downstream 1019189 26626053 ~ 26729946 (+)
fam160b2 LOC108265858 other downstream 1576157 27183021 ~ 27261741 (+)

Expression


Co-expression Network