npy8br (LOC108265010)


Basic Information

Item Value
gene id npy8br
gene name LOC108265010
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 25083550 ~ 25099662 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925610.2
CAAACCTAAACGATTCGTTGTCGAATCTCTTGATAAAGCGCTTTCCGTTTCGAGCGCGCGCTGCTGCGAAAAGCCCAGGACACAGAGGAGAGAGCAGTGACTACCTGTCCGAGAGGTGAATGATTGCACCAGTGTTATTTCAAGGACTTCAAAATGAGACGTCTTGGAGACTGAAATTAAATTAGATCACGAGAACTGCATATACTGTCTGGTATTTGAtttggatcagtgtgtgtggtgtggatGAACAGTTGGTGATGGTGGGTGCCCACATTAACAACAGCACGCAGCCCTGGTTGGGGTGGGAGGTGGAGGTTTGCTCACTCTCTCTGGGTGGCACCACCTTCCTGATCATGGCCTACAGCACCATGCTGGCTGTGGGCCTGGTGGGAAACACTTGCCTTGTCCTGGTTATCCTGCGCCAAAAGGAGATGCACAACGTGACTAACGTCTTCATCGCCAACCTTTCCTGCTCCGACATCCTCATGTGCCTCATATGCCTGCCCACCACTATCACCTACACGCTGATGGACAGGTGGATTCTAGGAGTGGCTCTTTGCAAATTGACATCATTCGTCCAGTGTCTGTCCATCACGGTCTCCATCTACACCTTGGTGCTGATCACACTAGAGAGGCATCAGCTCATCATCCATCCTACTGGTTGGAAGCCGGTGCTTGGACACTCGTACCTGGCTGTGGCTGTCACCTGGATTATGGGATGCTTCATCTCACTGCCCTACCTTTCCTTCACCTTCTTGGATGACTTGAACTCCCACAACCTCAGCCTTCCGACGAATCCCTCAGATGATCACCTGGTCTGCATGGAACAATGGCCATCGGAGGTGAACCGGTTAGCATACACTACATCAATGCTGGTGTTCCAATACTGCCTGCCTCTTACACTCATCAGCGTCTGCTACTTGCGCATTTTTCTGCGCCTCAGTCACCGCAAAGACATTATCGAGAGGACACGGGACGCGCGACAACGAAATGCAAAACATGCCAGGCGGATTAACGCCATGCTAGCCTCCATCGTGGCCCTGTTCGCCCTCTGCTGGCTGCCGCTGAACGTCTTCAACGCCATTTTCGACTGGAACCACGAGGCCCTCACGTGGTGCCACGACGCTGTCTTTTCAGTGTGTCACCTCACAGCGATGGCTTCAACATGCGTCAACCCCATCATCTACGGCTTTCTCAACAACAACTTCCAGAAGGAGCTGAAGTCGCTGCTGTATCAGTGCCGGTGCTCGGGGGTTCCGCAGAATTATGAGAGCTTCCCGCTGTCTACTGTCAGCACTGATGTGACGAAAGGCTCCGTTCTCAGCAATGGCTCTGACAGCATCACCGTCTCACCGCAACAGCAAGAGAAAGAGTGTTTGTAAATAAGCACCTCATACATGTTCATTAGACTGAGTTACACCTGTTGGCTTAAGCGCATGTCTACATATGCTCAGTTATCATTTGAAAAACAAGAGTGGGTCCATATCGCTATGAACCAGATCCCATGAATTGGACTGCATTGTTAAACAAGGCtcatatatcatcatcatccaacTGCTGGGTAGGATTTGAAGATGATTAGTAGCAAACCAGCATTATTACTGACCGGACCTCATGTTCAAAGAATGTATCCTTGATTGATTTGAGGGCACTGTGCAAATATTGaagattattttttctttctctctaactTTggtattacttaaaaaaaaagtatataaaggCTTGAAAAAGGTAACTTTCACCCGCTAGTCACAAGGTAGAGCGCCATACACTAAAATAGGTTGTGTATCACGTGTTCCTCAGAAATTCACAGCATATATGTATGATCTTGAACACATACTAAAAACTAAAGAAGGGGGAGGGGCTCCTTCTCAGTCTTGGGGTGAGTCAATGTGACTGATGGAAACATGTACGTCATCTGAAGACAGTAACATTAcgagaaaaaggaaaggaaaacacaTTCAAGCCATCCAGTGGTGGAAATTAATGGACCAAAGAAGAGGATGTGTTAATACTGGAAAGACAATTTGCACACTGAAGTTGGGACGTTTGAAAGAGTTCACATAATAACGGATACTGTGTCAGTTTTACTTGCCTGGCAAGCGACAGTGTTAAGTTAGGGGGTGGGGCTAAACATCAAAACGAAGTTCTCTGCATAAGTCAGgtaaacaaagcagctttcTAAAATAATTCAGAGAGGCCTTTATGTAAAGCCTTGATGAAAAACACAGTGTTTCTTTGgtcaaatatgttaaaaatgtgaatgtaacCACAAGCCACGTTTGTTTTACTTCAAAACTACAATAATTCCCTTTAGGTCTGCTTCACCTCTCTTACTTTGCACAGTGTGTGATTCACTACTGTCACACACAGATTAGTAGATCAGTAGATGCCTCCTAGGTCACAAGGTCAAAGGTGAAGCTAAACTGTAAATAGCGAAGCATGCCGTTAGCTGTAATTAgaatatttttgataaatatAGACTGATAGTTAATGCTGTAATAACATTTGGTtcccaaaaataaaacagctctaTGTTTGTTCCTTCAGTGATAGTGAAAGCTGAAATAGTGAAAGcccttgtttatttatttattgagtccAGAGTGTCCACATTGCAAGGTGACCAGATCTGATTTGTttgcattatattatatcaCATTTGCTTGAATATTCACACTGGGTTTTGTGGTAATGGAGCAGGATTTTGAGTAGTCTGGAGGAGAGGAAAGGTAGCTAGTTAGACAGCTTCCAACACAAAGATTTCAGTTTGGATTCTGTTTTCCATAAAGGCAATGtgcagtgggcctcatttatcaatcttttagtaactttgtgtgtaaatatttccaaACCGAACGAAGACTTACTAATGTTTCggtaacactgattttcttgGTACTTGCGTGTGTACGTTGATAAACATCAACCAGTCATAAATTACCTAGCGTGTTCATGGCACAGCTggtttacatttagccacgtcCACAAAACTCAAGctcagagagctgaaaatgacaaaatggtgattaaacagtgaaagagtaCCTCCTAAGCACAGCATGCgataaatcttccagtaatgcagcatGTTGGCTCCTACAGACACAAACTAACTCATCCTCACTTTATAGGTCGCCATTCATTTTGTCCTAAATGACTATGTAGGCTTATGCTTTCTTTGAAGTCATTAATACAAAACAACCAAGTGTCTCAAAATGTTCCTCAAATTTGTGCATTTgtgcaattgaaataaataagcaatttaaattaacaacataatgtttatataaaattgcagtaactcatcaccAGTTAAACAGTAGGATTCTAAGCCAATCAGCTGaagttcacattagtgagtctccttgtATAAActttacacaaacacaggggATCTCGTAggatgcaaatgttttttttttctaagctaactggattttcatgaaaagaataatttcattcatatccagtttgttaaatgaggcccagtgtttcTTGTTGCTTTCACAGCATCCATATTATTGTTCATGCAAATTTCTAATGCTAAGAAGGGCCCTGctgaatgacaaaaaaataatcctATTTGACAGGTAagcaaacatttaatatttgaaaaatattaattagcAATATTAAATTAGTggaaatttaataataatctgcAGGTTGGAAAGTCataatggtttaaaaataataagctGTAAAATGTGAGCTCACACTCCAAACACATACATAGTATACATAGTATATACACCATGGAAGCTTATTGTGACTCACGTAATGCAAATTATAACATGCTAACATCCAAGAACAGCACTTTAGATATGTTTAGACAAAAAGagctgtatattttaatatggaAATCTGTTCAGTTGGAGTGGCATTCTCCTGCACTCTtggtgcctcacagctccagggttcgatCCCGAGCTTTCTCCAGATGCTCCGGTtgtctcccacctcccaaaacatgccagtaggtggactggttacTCTAAATTAAAGCTCGGTGTGaccgagtgtgtgaatgtgagtgcaTGCATGGTGCACTGCggtggactggtgtcccatccagagtgtattcttGCCTCATTCATTAAGTTCCCAGGCAGACCAGAGCTCAGAGGAAGGGCAAAATGGGCGGTAACCCAGGTCAAATTTGAGCATTTTgtgtatgatttttattttccattgtaCAACCAGCAGTAATCTTACTCAGAGTGCAGTTTGCCAGCCAGAGAGAAGAGGGAGACGTGTATATGTTAAATggagtttgggatttttttttttgccagtggcaactataaacaaaaacatagcAGATCTGTTAGAGCGTTTATCAGATTATTGTATTATTGATCATAGAGAATGAGTTGTCGATAAAAAGAAACATTGATATCAGTAATTGCCTGCTGGCTGCTCTGCTGTATgtgaagtatattttatttgtactcAATTGTAATTGCCTTTATAGTGCTTAAACctaaatgttatagaaatattGGAGAAAATACAACACAGTATACCCTATCAAGGGTCTTTAATCCTAGTCATATATACACCTGTTCACTCTCATGATTAATTCACCATTTAAACCTACATTATTGATCTTTATCCATACTTTTTTGGTGTctttgtgtgtacgtgtgtgtgtgtgaatttcaaTTTGAAATCTGCCCACTGTTTTCATCACAAATCTCTGTGGTCGATCTGGCGCAGCTGCCAGCTAagattgtttttaaatggtATGCAGTCCGTAATTTGCCAAACTGTCATTCATGCGCTGGTTATGTTCAGTTATATGTTCAGCTTATTTTTATGCACAAACCACCCACAAGCCACATTCCCTCACACACGGGCCCTGCCAAAAAATACGGCCCTGGTCCACGCACCCCACTTGAGACCACCACGTTCCCAGgataggttccagatccaccCTGACCctgataaagtggttactgaagaggaatgaactTGGTTTACAGATGCTTTTGCAAATTTACGAATGCTACAATATAGCTAGcatgggtccctggaggactagtggttaggccacagcgctctcaccgctgcggccTCGGGTTCATTTCCCgaccagggaaccgacc

Function

NR:

description
PREDICTED: neuropeptide Y receptor type 1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004983 neuropeptide Y receptor activity molecular_function
GO:0042923 neuropeptide binding molecular_function

KEGG:

id description
K04209 NPFR; neuropeptide F receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925610.2 True 5114 mRNA 0.42 2 25083550 25099662

Neighbor

gene id symbol gene type direction distance location
tbx16 LOC108265264 coding upstream 58078 25021883 ~ 25025472 (+)
cabin1 cabin1,LOC107747802 coding upstream 70436 24954083 ~ 25013114 (+)
cep78 cep78 coding upstream 130126 24944113 ~ 24953424 (+)
vps13a vps13a coding upstream 158111 24878786 ~ 24925439 (+)
rab11fip1a LOC108265531,LOC108426714 coding upstream 371464 24693337 ~ 24712086 (+)
kctd9a kctd9,kctd9a,LOC107721077,LOC107678460,LOC107559451,LOC107698117,LOC107710853,LOC107553135 coding downstream 23939 25123601 ~ 25131707 (+)
ankrd39 LOC108264957,LOC108265164 coding downstream 55627 25155289 ~ 25157804 (+)
fgfr1a LOC108265400,LOC108426697,LOC103036914,LOC107710851,LOC107698118,LOC107553171 coding downstream 83829 25183491 ~ 25220173 (+)
lgi3 lgi3,LOC108265401,LOC108426696,LOC107698096,LOC107678470,LOC107559454 coding downstream 135432 25235094 ~ 25247013 (+)
chmp7 chmp7,LOC107710849,LOC107698119,LOC107559457,LOC107678414 coding downstream 150083 25249745 ~ 25256383 (+)
LOC113533216 NA non-coding upstream 234006 24848068 ~ 24849544 (+)
LOC113533328 LOC108265709 non-coding upstream 300125 24730987 ~ 24783425 (+)
G138578 NA non-coding upstream 436099 24646779 ~ 24647451 (+)
G138535 NA non-coding upstream 581179 24502086 ~ 24502371 (+)
G138280 NA non-coding upstream 719789 24362949 ~ 24363761 (+)
G138907 NA non-coding downstream 177635 25277297 ~ 25284948 (+)
LOC113533374 NA non-coding downstream 210243 25309905 ~ 25333613 (+)
LOC117597843 LOC108261789,LOC108265915 non-coding downstream 321392 25421054 ~ 25428188 (+)
G138961 NA non-coding downstream 348953 25448615 ~ 25451577 (+)
G139166 NA non-coding downstream 572856 25672518 ~ 25683091 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1069769 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 1188825 23890416 ~ 23894725 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other upstream 1326436 23750417 ~ 23757114 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other upstream 1558845 23514586 ~ 23524705 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other upstream 1821559 23248348 ~ 23261991 (+)
LOC113533115 gnrh1 other downstream 33079 25132741 ~ 25134258 (+)
egr3 egr3 other downstream 452232 25551894 ~ 25558731 (+)
LOC117597866 NA other downstream 809913 25909575 ~ 25916807 (+)
car15 LOC108264895 other downstream 1300529 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 1463158 26562820 ~ 26567932 (+)

Expression


Co-expression Network