rpl6 (rpl6,LOC107699672,LOC107671003)


Basic Information

Item Value
gene id rpl6
gene name rpl6,LOC107699672,LOC107671003
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 18252746 ~ 18258724 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925657.2
CACCACAGAAGCAAACGTAAGGCACTACGTCAGACTATATATGCGTCAAGTGCCCGGATGTAGGCCTTTTTTTCCGAGCTCGAGatGGCTGAGGGTGATAAAAAGCGCGTTGCCCGCAAGCGGCACTGCAGCCGCAACCCTGTCCTGGCCAGGGGCATTGGCCGCTACTCCCGCTCGGCCATGTTCGCCCGGCGCGCCATGTACAAGAGGAAGACCAAGGCACCTGAATCCAAGATTGAGAAGAAGCTGAAGGAGAAGCCCCCTACCACTGTGGTGAAAACTGTTGGTGGAGACAAGAATGGAGGTACCCGTGTCATCCGACTGCGCAAGATGccacgTTACTACCCAACAGAGGATGTACCCCGGAAGCTGCGCAGTCATGGCATCAAGCCCTTCAGCCAGCACAGGAGGAAACTGCGCTCTTCCATCACGCCTGGAACTGTACTCATCATGCTCACCGGGCGCCACCGTGGCAAGCGTGTGGTCTTTCTCAAGCAGCTGTCTAGTGGCCTTCTCCTTGTCACagGTCCTTTAGCCTTGAACAGAGTTCCTCTGCGTCGGGCCCATCAGAAGTTCTGTATTGCCACTTCCACCAAGCTGGACATCTCAAGCGTGAAGCTTCCCAAGAACCTGAATGATGCTTActtcaagaagaagaagctcaGGAAGCCCAAACACCAAGAAGGGGAGATCTTTGACACTGAAAAAGAGAAATACCAGCTGACGGAGCAGCGGAAAGAAGACCAGAAAGCTGTTGACTCTCAGCTGTTGCCTCTCATTAAGAAAGTTCCTCAGCTGAAAGGGTACCTGCGCTCCCAATTTTTCCTCTCCAATGGGGTGTATCCCCACAAACTggttttctaaataaataaaacctggtTATTCCACCCACTACCTGGAA

Function

symbol description
rpl6 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development and pancreas development. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in digestive system; endodermal cell; epithelial cell of pancreas; and lens. Orthologous to human RPL6 (ribosomal protein L6).

NR:

description
PREDICTED: 60S ribosomal protein L6

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02934 RP-L6e, RPL6; large subunit ribosomal protein L6e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925657.2 True 901 mRNA 0.53 7 18252746 18258724

Neighbor

gene id symbol gene type direction distance location
acaa2 acaa2,LOC107671002 coding upstream 1042 18241929 ~ 18251704 (+)
vsig8b LOC108265910 coding upstream 37603 18204157 ~ 18215143 (+)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC106585548 coding upstream 61151 18144047 ~ 18191595 (+)
plat plat coding upstream 134671 18087941 ~ 18118075 (+)
polb polb coding upstream 313051 17928424 ~ 17939695 (+)
dgcr6 dgcr6,LOC108265986,LOC103029434,LOC107721026,LOC108430318,LOC107572069 coding downstream 14939 18273663 ~ 18275468 (+)
vgll4l LOC108265912 coding downstream 32765 18291489 ~ 18297481 (+)
lmx1bb lmx1b,lmx1bb,LOC108434405,LOC107723253,LOC107550585 coding downstream 884823 19143547 ~ 19200105 (+)
zbtb34 LOC108265239 coding downstream 987024 19245748 ~ 19264636 (+)
ralgps1 ralgps1,LOC108412534,LOC107669254,LOC107727327,LOC107723240 coding downstream 1011902 19270626 ~ 19389662 (+)
G134655 NA non-coding upstream 130585 18121879 ~ 18122161 (+)
G134598 NA non-coding upstream 168267 18074135 ~ 18084479 (+)
G134604 NA non-coding upstream 213440 18031925 ~ 18039306 (+)
G134586 NA non-coding upstream 304784 17947331 ~ 17947962 (+)
G134557 NA non-coding upstream 350841 17901705 ~ 17901905 (+)
LOC113533180 NA non-coding downstream 11772 18270496 ~ 18271764 (+)
LOC113533181 NA non-coding downstream 13221 18271945 ~ 18272850 (+)
LOC113533555 NA non-coding downstream 137137 18395861 ~ 18416432 (+)
G135076 NA non-coding downstream 474674 18733398 ~ 18733630 (+)
G135085 NA non-coding downstream 553766 18812490 ~ 18812710 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other upstream 203857 18030975 ~ 18048889 (+)
G134341 NA other upstream 955863 17296111 ~ 17296883 (+)
gucd1 gucd1,LOC102792582 other upstream 1383978 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 1514762 16716133 ~ 16737984 (+)
mtmr3 mtmr3,LOC107699659 other upstream 1630980 16580257 ~ 16621766 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 177461 18436185 ~ 18681932 (+)
G135287 LOC108265174 other downstream 1228763 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 1567074 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 1922044 20180768 ~ 20185618 (+)
LOC113533440 erc2,LOC108264953 other downstream 1963691 20222415 ~ 20442191 (+)

Expression


Co-expression Network