renbp (renbp,LOC107683888,LOC107747208,LOC107702837,LOC107725049)


Basic Information

Item Value
gene id renbp
gene name renbp,LOC107683888,LOC107747208,LOC107702837,LOC107725049
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 23711642 ~ 23720857 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925663.2
GTCTTGGTCATATGATGTGTGCTGTGCAGCTTGCTGGTTCAGCAGTTTGTTTTACTGTGCAAAGTTAAAGAAAAAGCAGACAGGCTGAAAGTGATGTGAGCAGCAGAGCGAggattttaagaaaaaaaagagagaaccgAGCTCTTAGTGCATTTTCACTGGACAGGCACAAAGATGGCAGCGTTGTTGAAGCAGTATCGTGAGAGAATACGCACTGAGCTGGACAGAGTTGTGGATTTCTGGCTGAAATACTCTCATGATGAGCAATATGGTGGGTTTTTTACCTGCATTGGAAAAGATGGGAAGATCTATGATGAGCTCAAGTATGTGTGGTTACAGGGCAGACAGGTATGGATGTACTGCAGGCTGTACCGCACTGTGCCGAGGTTTCACCGGCCAGAAATTCTTCAAGCTGCCAAATCAGGCGGTGCGTTTCTCCAGAGATTCGCTCGAGTGCAGGCCTCAGACGGTCCAGGAAAGTGTGCGTTCTGTCTGACGAGGGACGGCAGAGCAGTAAAGGTTCAGAGGACCATCTTCAGCGAGTGTTTCTACGTCATGGCCATGGATGAACTTTCCAGGGTCACAGGAGACAAAGAGATGCAGTCCGATGCGGAGAGCATGATGGATCAGTTGGTGCACTGGGTCCGGGTTGACTCGTCAGGTCTGGGTCGTCCTCAGCTTCCTGGCGATCATCCTGTTAACAGCATGGCGGTTCCCATGATGCTCCTGTGCCTGGTGGATCAGCTGACAGAGGGTAGGGCAGAGCTcgcagagaaatacagagagctGGGTGACTGGTGTGTCTCTCAGATACTGCAGCATGTACAGAGAGATGGAAAGGCCATTCTTGAAAATGTGTCACTGGAGGGAAAGGAGCTGCCTGGCTGTCAGGGACGTTTGCAGAATCCAGGTCATGCGTTGGAGGCTGGCTGGTTCCTGCTGCAGTACGCAAAGGCATGCGGTGCTGCAGAGCTGCAGAATGTggctgtgcagaagttcatggAGGTTCCCTTCCTCACCGGCTGGGACAAAGAACATGGAGGACTCTTCTACTTCCTAGACGCTGATGGTCACTGTCCCACGCAGCTGGAGTGGAACATGAAGCTGTGGTGGCCTCACTGTGAAGCTCTCATCTCTTTTCTAATGGCCTACGATCACTTCAGAGATCCTGCAATGCTGGCGAGATTCACGCAAGTCTACGACTACACCTTCACACACtttccTGATGAAGAGCATGGTGAGTGGTTCGGATATCTGAGTCAGCAGGGGAAAGTGGTGCTGGATTTTAAAGGGGGACCTTTCAAAGGGTTCTTCCATGTTCCTCGATGTCTCTACATGTGTGAGAAGATGCTGGATCATCTGCTCACAACACTCGAGTCCTAAATGTATCCACAAACTAATTGATGATATTTTCCGCACTTTTTTCAACTACTGTAACGTTTCTGCTATAGCATATATACATGCTTACACTCCAAATCAATACTTAGCCTACCTGGTCTGTATACTCTAAGTGCCAGTATTTTACCCAGAGGAGTTGTTTTTATAGAAATGGTAAAGGGAGCAGTTTTTTGGAACATTTCTCTGGACAGTTAGTTGCTGGTATAATGAATCCATGCACACACTAAAGCCAGGTTATGAGTAAACCGCAAAGGAACAGGAGACTTAGGTTTCATAAATGAGTTGGTTTCCAGGACACAATCTTATATCATGTAGCATGTTCAAGCATGTTCAATCAGAACTACATTTCTTACATGTCGCTAAACTCAAGTGGAAGCAGAAGAACAGATGTGTTCCCTGATACTGTAATGTTAAGATATATTCTCTTTAAAGTACTCAATAAGGCAATGCACAAGCAACTCGGACTGGACTCTGAAATCCTTCCAGAATTAACCTAGATTAAGCATTTGGCATTTAgtcaagacagaaagaaagacagaaagaaagacagaaagaaagacagaaggaaagaaggaaagaaagaaagaaagaaacctgaATTATCTAACTCTCAGCAGTTCAGTGAGCCAATATAAGCCTTTAGCACAATGTATTGCCTTCAGTGATGAGCTAGACCAGGGGTATTCAACCAAATGTAAAtttccagttacataaaattccttgcttaacATGCCTGAGTGGTGACaactttttccttttaattagtttacagatataaataggTCATGTCGTAAGACCAGagagaataaacaaaatgaaaaatctctGAAGATGTTTGGAAATTGTTCTGTTTGTGAGTTGATGTCTTTAGTCTGTAGCTAGattctggtctgatgagctgctttCAGGTAAATAATTTCCATAaatgcatttgatttttttaaacagaggatctgctaaaGAAGCCATGGTGGTTTACTGAAcctttttttcatacatttatcaGCTCTACTACAGTGTATTTTCCAAGTACTTGAAATACTTTGTTGAGTCCGCATCCGGATCGTGGTCTGCCAGTTTGAACCGAAGTGGATTATTCATAACAGCAGTAGTGTATAGGAGGTGTCCTATGTCCTGttcaaatgtttattaaatatctaTAGTCACTTTGTACACATGCTTTTACATGTAGTTTATTGCACACATTAACAACAGATGATTTGCTACATTGCAGCGTAGCATGTTAAGCACTCTAAATGCACGGAATTTCATGAACGCTTCCTGTCTAAGTAACACTAACATTTCTGCCATATTTAGTCACTCCAGCGATTAATACTGACAAACATCTATATGTCTGAATGCTGTCCACatattgtacagttttaacacattttaaccaTCTACCTAAACATTCAAGAGTgccaactgatttttttttccaagttaaCCAAATCTTGTATTCTACTAATTATgcaatgtttaaatgtatttactcAGTGCTacatcatatttttacattttctcatgaGATGTAAAATGAGTACTAGTCAATTACTGAGGCTGCTTGCCGGCTTCACATTTCCCCACTGTTCATGTGTTATGGTGTTCAGCAAATACTACTCTGAGAAAATTGTGAAAGTGTACTTGAAATTGTCAGTaaaattaaagatttatttcaaaatgtgtGTCAACTTGTGTTAGGGAAAAAATGGTTTCATATTcaagaattaaagaaaacatttcactaca

Function

symbol description
renbp Predicted to enable N-acylglucosamine 2-epimerase activity and peptidase inhibitor activity. Predicted to be involved in N-acetylglucosamine metabolic process and N-acetylmannosamine metabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Is expressed in pancreas; pancreas primordium; pancreatic bud; and yolk syncytial layer. Orthologous to human RENBP (renin binding protein).

NR:

description
PREDICTED: N-acylglucosamine 2-epimerase

GO:

id name namespace
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K01787 RENBP; N-acylglucosamine 2-epimerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925663.2 True 3147 mRNA 0.42 12 23711642 23720857

Neighbor

gene id symbol gene type direction distance location
si:ch211-218o21.4 LOC108265477 coding upstream 327 23706068 ~ 23711315 (+)
zgc:162200 LOC108265478,LOC108442080 coding upstream 8522 23682257 ~ 23703120 (+)
rbm39b LOC108265754,LOC108442077,LOC105906838,LOC105007609 coding upstream 60500 23642841 ~ 23651142 (+)
slc12a5b slc12a5b,LOC108442076,LOC108265753,LOC107550951,LOC105007608 coding upstream 71417 23573322 ~ 23640225 (+)
eif2d eif2d coding upstream 164984 23534596 ~ 23546658 (+)
gpkow gpkow,LOC107702823,LOC107575438,LOC107564457 coding downstream 146000 23866857 ~ 23877386 (+)
timm17b timm17b,LOC107722912 coding downstream 162294 23883151 ~ 23889055 (+)
cacna1fa cacna1f,LOC108426741,LOC107756819 coding downstream 175208 23896065 ~ 23919350 (+)
sypb syp,sypb,LOC108426646,LOC107678440,LOC107553146,LOC107664463 coding downstream 199420 23920277 ~ 23931516 (+)
plp2 plp2,LOC108426740,LOC107682436 coding downstream 214267 23935124 ~ 23951250 (+)
G137650 NA non-coding upstream 552135 23095798 ~ 23159507 (+)
G137651 NA non-coding upstream 607976 23100607 ~ 23103666 (+)
LOC113533633 NA non-coding upstream 705246 23002703 ~ 23006396 (+)
G137626 NA non-coding upstream 748288 22963131 ~ 22963354 (+)
G137613 NA non-coding upstream 758347 22951965 ~ 22953295 (+)
G138014 NA non-coding downstream 26606 23747463 ~ 23750368 (+)
G138176 NA non-coding downstream 269041 23989898 ~ 23990097 (+)
G138239 NA non-coding downstream 400753 24121610 ~ 24124569 (+)
G138280 NA non-coding downstream 642092 24362949 ~ 24363761 (+)
G138535 NA non-coding downstream 781229 24502086 ~ 24502371 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other upstream 186937 23514586 ~ 23524705 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other upstream 449651 23248348 ~ 23261991 (+)
LOC113533432 gpr153,LOC107693426 other upstream 1074653 22594534 ~ 22636989 (+)
LOC113533405 NA other upstream 1202148 22507626 ~ 22509494 (+)
LOC113533283 rbsn other upstream 1587891 22092595 ~ 22123751 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other downstream 29560 23750417 ~ 23757114 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other downstream 169559 23890416 ~ 23894725 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 290725 24011582 ~ 24013781 (+)
LOC113533115 gnrh1 other downstream 1411884 25132741 ~ 25134258 (+)
egr3 egr3 other downstream 1831037 25551894 ~ 25558731 (+)

Expression


Co-expression Network