exosc10 (exosc10,LOC107682930)


Basic Information

Item Value
gene id exosc10
gene name exosc10,LOC107682930
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 22360790 ~ 22376465 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925730.2
TTCTCGCGATATTTTATTTGTCAGCATGGCGGCTAGCAGGAGCGGAGATGGCGGCGGCGCTAAAGAAAGTGCGACTTCTGTAAATAAAGATGCAGATTCAGAGACAGCAGAGTTTTGCCCAGGTTTTAAAGACGTGGATGCTTTTGTTAAGTATGGACTCGGCTCTATCATGGCTGCTACAAAAGCATCTGCAGGTTTGCCACAAGCAGGAGACGAATATGACTTTTACCGGAGCTTTCCGGGCTTCAGGGATTTCTGTTCAGTGCAAGGAGACCGACTTTTACACTGTATGAGTCAGCTGATGCAGCACCATGGCTGCAGATCTCAGTTGAAAGACCAGAACAAGCTGACTGGCCTGGAGGAGCGCTTTGACATGGTGGTCGACTCCAATGATGTCATCCTGGAGAAAGTGGGAATTTTGCTGGACGAGGCGTCTGGAGTGACCCGGTCGCAGCCTGTTATGCCTGCAGGCTATCAGCCTCCCAAAATTGTTGTGTCTAGTTGGAATCGCAAGGGAGGAGACCGCAGTGCCGAGACCTTCCGCCTCCTTCACGCCAAGAACATTCAGCGGCCGCAGCTAAAGTTTAAGGAGAAAGTCGACAACAGCAACACGCCGTTCATCTCTAGAATCTTCATCAAGCCCAACGCATTAAAGCCCCTGGCTCCATATTTTAGTAACAAACGCCTGCGGAAGGAGAGGTCAGAGGAGTCAGATGTCCCCGTAGCACTAGCTGACTTTATCCACCAGCTGAGAGCACAAGAGCACACGGAAGACATGTTTTCTCATCCTTACCAGTATGAGCTGGACCACCTGGTCATGCCGGAGAGTCTCAAGAGTAAACCTGAACCGCAGATGTATAAAGCTCTAGCAGAGACAACTTGCCAGTTCATCAACAACTTGGAGGATCTGGCTGCTTTAAACGAGAAGCTGAATAAGACCACAGAGTTCGCTGTGGACCTggagCACCATTCCTACAGAAGCTTTTTGGGAATCACGTGCTTGATGCAAATCTCCACCAGAGAAGAGGATTTCATCATCGACACCCTCGAGCTGCGGAGCGAGATGCACATTCTGAACGAGAGCTTCACCAATCCCAGCATTGTGAAGGTTTTCCATGGCGCTGACTCGGATATTGAGTGGCTGCAGAAAGACTTCAGCCTTTACGTGGTCAACATGTTCGATACTCACCAAGCTGCTCGCTCACTCAACCTCGGCAGAAACTCGTTAGATCACCTCCTCAAAGTCTTCTGCAATGTGGACTCGAATAAACGCTACCAGCTCGCCGATTGGAGAATACGACCCTTACCAGAGGAGATGATCAAATATGCCCAGGCTGACACACATTACCTGCTCTATGTGTATGATCGACTAAGAGCGGACCTGTTCGACGCGGCTAACGGACAGTCATCACTCGTACAGCTCGTCTGGTCCAAAAGCAAAGATCTCTGCCTAAAGAAATACATGAAGCCCATCTTCACTGAGGAATCGTATATGGAGCTGTAcaaaaagcagaagaagagCTTCAACAGCCAGCAGTTAACCGCCTTCCGTCTCATGTATGCGTGGAGGGATAAACTGGCAAGAGAGGAAGACGAGAGCactgggTACATCCTACCCAACCACATGATGATGAAAATTGCCGAGGAGTTGCCCAAGGAGCCGCAGGGCATCATCGCTTGCTGTAACCCCACCCCGCCACTAGTGCGCCAGCAGATCAACCAACTCCATCAGCTCATCAAGCAAGCGAGGGAAATCCCACTGCTGAAGGCGGAGGTACTCGCTGAAAAGAAGAAATCGCTGACACCTAAACGAAAGTCTGAGTCGACGTTGTTTGGGCCCCATGACACCTCGCGTGTGTCCGAGAGTGACCTTATGGAGATCTCCTCTCATGAAACCCCGACCAAACGTGGAGTgcttttctcagaggaggatgATGCAAATCTTAGTGAAGACCAGGAGTCTCTTCATGGTCTTGTAGCTTGTGCAAAAATCTCCCTCTTTGCGgaggaagaggaggtgcGTGAATCTGCTCACCTCACCGTGGCCCAGCAGAAAGCGCGCAGCATCATGGAGTCTTTTGAAAATCCTTTCAGAATGTATTTACCATCAAAGGATATACACATCTCCAAGAATGCTAAATACGACCCTTCGTCAAAGATTTATGAGATCAGTAATCGGTGGAAGCTGCAGAGCATCGAGCAGCAGCAGAAGGAGGTTCAGGCTAAACAGCAAGCCAAAGAGCAAGCAAAGAAAGCTAAAGAGGAGCGTAAAAAAGCCAAACAGGGCTATCAGGAGTCCCTGCAGAATGTCACGACAGTCAGGCAGCAGGTCCTGGAAGCAAAGCAAGgaggacagaagagagagagggttacGAGTGAAGCTGGTGAAGAAACTTGCAAACCGAAGAAGAAAGCGTTGAAAACCGAGAAGTCCACCGCCGCGTCTCCTGCAACCTCTAAAGCGAGCCAGCAAGAAGAGTCTGAAGATCCTCAACAGGCCCCGTCTGCTGCCTTCACACCTTACGACTACAGCCAGTCCGATTTCAAATTGTTTGCAGGTAAACCCAAAGACTCCACACACTTCGACCCAAACAGACAGGCTCCTGAACCCAGACGGAagAAAAACCTGAGAGGAAATAAGCAAAGTGCTGGTGGAGGCCGGAGCATGTCCTACCTGCCTGCAAAATCTGACAGAGGATTTCGTCACAACTGGCCCAAAAGATAAGAGTCTCtccaggttttgtttttttaatgtgggTCATTTtagctatatatttatatatagtacatTTGGGGAAACGATACACAATGCTGTATACAAATTATGGAAGACCTTTCATTAAAATTAACTTTCTAAATATTGCTTTCTTTCCATTGTGAGGTTTTTTATGACCTACAAAATAGTGGAAGTGTCCTAATAAACATGCACCAAGGACCAAATTTAATAATTGTGATTAGTGGTGCATTATATGAAGTTTTTCCTAAAATAAAGCATCACAGTGAGAAAgtggtgaatgaatgaagtatTAGGTGAAA

Function

symbol description
exosc10 Predicted to enable 3'-5'-exoribonuclease activity and single-stranded RNA binding activity. Predicted to be involved in RNA catabolic process and ncRNA 3'-end processing. Predicted to act upstream of or within RNA processing. Predicted to be part of nuclear exosome (RNase complex). Predicted to be active in nucleolus. Orthologous to human EXOSC10 (exosome component 10).

NR:

description
exosome component 10

GO: NA

KEGG:

id description
K12591 RRP6, EXOSC10; exosome complex exonuclease RRP6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925730.2 True 3036 mRNA 0.48 25 22360790 22376465

Neighbor

gene id symbol gene type direction distance location
mtor mtor,LOC107564227,LOC107727986,LOC107594963 coding upstream 1742 22267058 ~ 22359048 (+)
qars1 qars coding upstream 94161 22252273 ~ 22266629 (+)
LOC113533224 LOC108265469,LOC108432124 coding upstream 148769 22205877 ~ 22212021 (+)
LOC113533222 LOC108265470,LOC108265625,LOC108265623,LOC108432118,LOC108432095 coding upstream 155630 22196749 ~ 22205160 (+)
LOC113533223 LOC108265625,LOC108265470,LOC108265623,LOC108432118,LOC107687125 coding upstream 166066 22187820 ~ 22194724 (+)
ppih ppih coding downstream 1463 22377928 ~ 22409804 (+)
ybx1 ybx1,LOC106572208,LOC107595774,LOC107693424 coding downstream 34728 22411193 ~ 22416575 (+)
hes2.1 NA coding downstream 121293 22497758 ~ 22499212 (+)
acot7 acot7,LOC107754737,LOC107693425 coding downstream 135607 22512072 ~ 22583841 (+)
kank3 kank3 coding downstream 309037 22685502 ~ 22706507 (+)
G137057 angptl7,LOC107727987,LOC107679102,LOC107594962,LOC107738924,LOC107687132 non-coding upstream 53175 22304729 ~ 22307615 (+)
G137017 NA non-coding upstream 211013 22148623 ~ 22149777 (+)
G136544 NA non-coding upstream 520938 21839632 ~ 21839852 (+)
G136532 NA non-coding upstream 535468 21824989 ~ 21825322 (+)
G136466 NA non-coding upstream 667088 21674858 ~ 21693702 (+)
G137086 espn non-coding downstream 90302 22466767 ~ 22467029 (+)
G137087 NA non-coding downstream 92169 22468634 ~ 22468839 (+)
G137088 NA non-coding downstream 94576 22471041 ~ 22471330 (+)
G137229 NA non-coding downstream 134440 22510905 ~ 22511176 (+)
G137232 NA non-coding downstream 215768 22592233 ~ 22593268 (+)
LOC113533283 rbsn other upstream 237039 22092595 ~ 22123751 (+)
LOC113533434 creld1 other upstream 501122 21825682 ~ 21859668 (+)
LOC113533123 LOC108265628 other upstream 562982 21781223 ~ 21797808 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other upstream 1612934 20744580 ~ 20747856 (+)
LOC113533440 erc2,LOC108264953 other upstream 1918599 20222415 ~ 20442191 (+)
LOC113533405 NA other downstream 131161 22507626 ~ 22509494 (+)
LOC113533432 gpr153,LOC107693426 other downstream 218069 22594534 ~ 22636989 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other downstream 871883 23248348 ~ 23261991 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other downstream 1138121 23514586 ~ 23524705 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other downstream 1373952 23750417 ~ 23757114 (+)

Expression


Co-expression Network