LOC113533564 (ywhaba,LOC103023259,LOC107708121,LOC108412308,LOC107584065,LOC108414621,LOC107595428)


Basic Information

Item Value
gene id LOC113533564
gene name ywhaba,LOC103023259,LOC107708121,LOC108412308,LOC107584065,LOC108414621,LOC107595428
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 23510190 ~ 23513559 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925780.2
GGGCTGGCCCAGTTTATAGGAAGCGGATGTGTCAAGTTTAGCGGAAGTGGTACAGCCCAGAGACAGAGAAGAACGAGAGGAGGACGGACACTCCAAGCCGAGCTTTCATAGAGAAAAAGCGGGACTAAACCCTATTTAAACCTCTGACAATGGACAAGAGCGACCTGGTGCAGAAAGCCAAGCTGGCCGAACAGGCGGAGCGCTATGATGATATGGCCGCCGCCATGAAGGCAGTGACTGAGGGCGGCGGCGAGCTGTCCAACGAAGAGCGCAACCTGCTGTCCGTGGCCTACAAGAACGTGGTCGGTGCACGCCGCTCCTCCTGGCGTGTCATCTCCAGCATCGAGCAGAAGACTGAGTCCAACGAGAAGAAGCAGCAGATGGCGCGCGAGTACCGTGAGAAGATCGAGGTTGAGCTGCAGGAAATCTGCAACGATGTTCTGGGTCTCCTGGAAAAGTATCTCATTCCCAATGCCTCTCAGGCTGAGAGCAAGGTGTTCTACCTGAAGATGAAAGGAGATTATTATAGATACCTGTCTGAGGTTGCATCTGGGGAGTCCAAGAGCTCTACGGTCGATAACTCTCAGAAGGCCTACCAGGATGCGTTTGAGATCAGCAAGAAAGACATGCAGCCCACACACCCCATCCGGCTCGGTCTGGCTCTCAACTTCTCCGTCTTCTACTATGAGATCCTGAACTCACCCGAGAAGGCCTGCAACCTTGCCAAGACGGCCTTCGATGAAGCCATCGCTGAGCTCGACACCTTAAATGAGGATTCCTACAAAGACAGCACCTTGATCATGCAGTTACTAAGGGACAATCTTACCCTGTGGACGTCGGAAAACCAGGGTGACGAGGCAGATGCAGGCGAGGGAGAGAACTAGAGGAGCCACACTGATCTCCaaacacccgcacacacaccccccatcttacttaaaaaaaaaaaaatttaaaaaatacacaaatggcTTCCTCTGAAACCCCCCACCCACCCTGCTTTCCATTCTCCATCCTTTTTCCATCAGCAGCCTGCTCCCTGTACCCACCCTCCCACGATCAGCATGAGATGCACCCGATGcgatacacacactgatgccTCTTGCGCAGGCTCCGGCGGCAGGGATGTGAGGGAGGGAGGGTTTGCGGGGTGACATGCCATTTTCAGCAGGTCCGCTCATTTTGTTTGTGAAATTCAACAcggttgtactgaatatcagatCCATATTTGTTAAGTGCAtgagtgagcgtgtgtgtgagagtctgaGTGAGTGTATGGTATGATAGTGTGACTGAGTTGTTGttcatgtgagtgtgtgtgtgttttggagtcGGGGGTTATAAACTCTAAAAGTCCTTCCTGatgattcctttttttttttttttttttttttttttttcttttcccatttttttccaccttaGCTGGTTGTGCATTTTCATCCTTATTTTTTTGTTACGGATTTTTTTAGTGTAATTCGTCATGGTATTTGCAGGTTTTATTGTATGGTTATTAAACTGGCAGTTTATTTTCACCAAA
>XM_034306466.1
GGCCCAGTTTATAGGAAGCGGATGTGTCAAGTTTAGCGGAAGTGGTACAGCCCAGAGACAGAGAAGAACGAGAGGAGGACGGACACTCCAAGCCGAGCTTTCATAGAGAAAAAGCGGGACTAAACCCTATTTAAACCGCAATTTAGCAAGAAGCTGAAATCTCGTCACCTCAGTTTTAACGCCGGTTCTGTGTCTGTCCTCGCAGTCTGACAATGGACAAGAGCGACCTGGTGCAGAAAGCCAAGCTGGCCGAACAGGCGGAGCGCTATGATGATATGGCCGCCGCCATGAAGGCAGTGACTGAGGGCGGCGGCGAGCTGTCCAACGAAGAGCGCAACCTGCTGTCCGTGGCCTACAAGAACGTGGTCGGTGCACGCCGCTCCTCCTGGCGTGTCATCTCCAGCATCGAGCAGAAGACTGAGTCCAACGAGAAGAAGCAGCAGATGGCGCGCGAGTACCGTGAGAAGATCGAGGTTGAGCTGCAGGAAATCTGCAACGATGTTCTGGGTCTCCTGGAAAAGTATCTCATTCCCAATGCCTCTCAGGCTGAGAGCAAGGTGTTCTACCTGAAGATGAAAGGAGATTATTATAGATACCTGTCTGAGGTTGCATCTGGGGAGTCCAAGAGCTCTACGGTCGATAACTCTCAGAAGGCCTACCAGGATGCGTTTGAGATCAGCAAGAAAGACATGCAGCCCACACACCCCATCCGGCTCGGTCTGGCTCTCAACTTCTCCGTCTTCTACTATGAGATCCTGAACTCACCCGAGAAGGCCTGCAACCTTGCCAAGACGGCCTTCGATGAAGCCATCGCTGAGCTCGACACCTTAAATGAGGATTCCTACAAAGACAGCACCTTGATCATGCAGTTACTAAGGGACAATCTTACCCTGTGGACGTCGGAAAACCAGGGTGACGAGGCAGATGCAGGCGAGGGAGAGAACTAGAGGAGCCACACTGATCTCCaaacacccgcacacacaccccccatcttacttaaaaaaaaaaaaatttaaaaaatacacaaatggcTTCCTCTGAAACCCCCCACCCACCCTGCTTTCCATTCTCCATCCTTTTTCCATCAGCAGCCTGCTCCCTGTACCCACCCTCCCACGATCAGCATGAGATGCACCCGATGcgatacacacactgatgccTCTTGCGCAGGCTCCGGCGGCAGGGATGTGAGGGAGGGAGGGTTTGCGGGGTGACATGCCATTTTCAGCAGGTCCGCTCATTTTGTTTGTGAAATTCAACAcggttgtactgaatatcagatCCATATTTGTTAAGTGCAtgagtgagcgtgtgtgtgagagtctgaGTGAGTGTATGGTATGATAGTGTGACTGAGTTGTTGttcatgtgagtgtgtgtgtgttttggagtcGGGGGTTATAAACTCTAAAAGTCCTTCCTGatgattcctttttttttttttttttttttttttttttcttttcccatttttttccaccttaGCTGGTTGTGCATTTTCATCCTTATTTTTTTGTTACGGATTTTTTTAGTGTAATTCGTCATGGTATTTGCAGGTTTTATTGTATGGTTATTAAACTGGCAGTTTATTTTCACCAAA

Function

symbol description
ywhaba Acts upstream of or within phagocytosis, engulfment. Predicted to be located in cytoplasm. Is expressed in several structures, including nervous system; optic vesicle; otic vesicle; solid lens vesicle; and tail bud. Orthologous to human YWHAB (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta).

NR:

description
14-3-3 protein beta/alpha-A-like

GO:

id name namespace
GO:0006911 phagocytosis, engulfment biological_process
GO:0005737 cytoplasm cellular_component
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K16197 YWHAB_Q_Z; 14-3-3 protein beta/theta/zeta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925780.2 False 1537 mRNA 0.49 6 23510190 23513559
XM_034306466.1 True 1600 mRNA 0.49 6 23510195 23513559

Neighbor

gene id symbol gene type direction distance location
LOC113533186 LOC108265406,LOC103023575,LOC108414617,LOC108433700,LOC100694607,LOC102788290,LOC103460371,LOC103156966 coding upstream 336 23505084 ~ 23509854 (+)
eif2s2 eif2s2,if2b,LOC107739644,LOC107756850,LOC107566961,LOC108414623 coding upstream 6680 23496631 ~ 23503510 (+)
LOC113533263 chmp4b,LOC108265407,LOC108414620,LOC103026801,LOC107573971,LOC107086700 coding upstream 14313 23490838 ~ 23495877 (+)
LOC113533314 NA coding upstream 25324 23478294 ~ 23484866 (+)
LOC113533316 NA coding upstream 48764 23437236 ~ 23461426 (+)
eif2d eif2d coding downstream 21037 23534596 ~ 23546658 (+)
slc12a5b slc12a5b,LOC108442076,LOC108265753,LOC107550951,LOC105007608 coding downstream 59763 23573322 ~ 23640225 (+)
rbm39b LOC108265754,LOC108442077,LOC105906838,LOC105007609 coding downstream 129282 23642841 ~ 23651142 (+)
zgc:162200 LOC108265478,LOC108442080 coding downstream 168698 23682257 ~ 23703120 (+)
si:ch211-218o21.4 LOC108265477 coding downstream 192509 23706068 ~ 23711315 (+)
G137650 NA non-coding upstream 350683 23095798 ~ 23159507 (+)
G137651 NA non-coding upstream 406524 23100607 ~ 23103666 (+)
LOC113533633 NA non-coding upstream 503794 23002703 ~ 23006396 (+)
G137626 NA non-coding upstream 546836 22963131 ~ 22963354 (+)
G137613 NA non-coding upstream 556895 22951965 ~ 22953295 (+)
G138014 NA non-coding downstream 233904 23747463 ~ 23750368 (+)
G138176 NA non-coding downstream 476339 23989898 ~ 23990097 (+)
G138239 NA non-coding downstream 608051 24121610 ~ 24124569 (+)
G138280 NA non-coding downstream 849390 24362949 ~ 24363761 (+)
G138535 NA non-coding downstream 988527 24502086 ~ 24502371 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other upstream 248199 23248348 ~ 23261991 (+)
LOC113533432 gpr153,LOC107693426 other upstream 873201 22594534 ~ 22636989 (+)
LOC113533405 NA other upstream 1000696 22507626 ~ 22509494 (+)
LOC113533283 rbsn other upstream 1386439 22092595 ~ 22123751 (+)
LOC113533434 creld1 other upstream 1650522 21825682 ~ 21859668 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other downstream 1027 23514586 ~ 23524705 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other downstream 236858 23750417 ~ 23757114 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other downstream 376857 23890416 ~ 23894725 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 498023 24011582 ~ 24013781 (+)
LOC113533115 gnrh1 other downstream 1619182 25132741 ~ 25134258 (+)

Expression


Co-expression Network