tbx16 (LOC108265264)


Basic Information

Item Value
gene id tbx16
gene name LOC108265264
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 25021883 ~ 25025472 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925805.2
TGCCCTCATCCTCTCCATATCTCTGGACTTAACTTGAATAGTTGCGGATCTTACTGAAGCTCATATGGAGAGCTTGGTGCTGTGACTGAAAACAATTCTGGAAAACACTGATTATTCCAATCGTTTTGCTTCATCTTGATTTTTGTTGCAGACAAAGAATCTTGAGAAATGCAGGCTATTAGAGACCTCAAACACAACTTCAGTATTCCACCTCCTTCTGCAATGGCTGGAGCAACAGACTCCTTTCACCAAGGGAACATCAGGATAACCCTGGAGGACCCTGAGCTCTGGAAGTCCTTCCATGAGATTGGTACTGAGATGATCATCACTAAGCCTGGCAGGAGAATGTTTCCCCATTGTAAGATAAATATTTCAGGACTTGTGCCCTATGCAAAGTACATCCTCCTGGTGGACATCGTGCCTGAAGATGGCTTCAGATACAAGTGGAATAAGGATAAGTGGGAGGTGGCGGGTAAGGCTGAGCCACAGCCACCTTACAGGACCTATCTGCACCCAGACTCACCAGCTCCAGGAAGCCACTGGATGAAGCAGTCTGTCTCCTTTCTCAAGCTCAAACTCACCAACAATGCCCTTGACCAGCATGGACATATCATCCTACATTCCATGCATCGCTACCATCCCCGCTTCCACATTGTGCAGGCTGATGACCTCTACAGTGTACGTTGGAGTGTGTTCCAGACTTTCACCTTCCCCGAGACCTCCTTTACTGCTGTCACGGCATACCAGAACACCAAGATTACCAAGCTGAAAATCGACAACAACCCCTTTGCTAAGGGATTCAGAGACGAGGGCATGAACTCAAAAAGGCGTGCAAACAGAGGTCCAGCTGATACTGAGCGGCTGGCTAAGAGGCTGAACTCGATGGTCAGGGACTCGGATCAAGATAGCCCACCAGATTTGCGCCGCTCTTCATATGAGGGACTGGCAGAGGCACGAGCTGGATGCAAGGAGGGTGTTAAAGAGGAGCCGAATTCTCCATGGGGAGAAGCATCTGATAGGGAAAACAGCCTGGGAAGAGACTCCCCCCTGGGCTCTAATACTCGAGACATATACAGCTCTGAACAGCTTGTGCCAGGACACAGCACATACCAACCTTACAGATTTCCTGATTACAACAAGTCCCCATCACCAACCTCCTCCAGCATGAACAGCAGTGCTGGGCGCTCCAGCTTCGAATCTCGAGTGCCTGACATAGCTACCGTGCCTGAGCAGGACAGCAAAGTCACTGATCTGGCTGTCCCACAGTGTCCTCCCCCTGCCACATCTGGTGTGCAGGACTATGCTGGGGTGCTGAACGTAGCTGTGGCACAGGCCAAGCCTGGCATGCTGGGACATCATGCACTCTATGCACCCTACAGCGCTGATCAGCCCCTGAGCCAGTGGAGCGGGACAAGCTCAGCCCAGTACCCATCCCACccacaccatcatcaccacttAGCAGCGGATTATGGGACCCAAGCTGTCCATCACGGCTACCACCATGCCAACATGGCTGACTGGAGCCAGTACCCACTCTTCTCATACTCCTGCTGGTGATCAGAGAAGCAGGACAAAGTGTGTGGACTCAAGGCTTGTTCAGCCTCCTTGGAGGCAAAGCGGAAATCAGAAAAGTGCACAAGAAGGTTGGAGAGAGACTGAGATTATTCAAACTTGAAGAAAATAGGGTTgtgtaaagcattttagcaAACTAGCTTTTTGTTGATTTTCTTGAAGATCTTATTGTTCACTTCAGTTGCTTCACTTCAAGACAAAACTAGCGCTGACTGCATGATGGTCAAATGGACTGCATGATGGTCTAAAAAGAGATGTATGTAGCTAGTAATGTGCTTTCAGTTTCAGAAGTATTAGCTTCTTGCTTGGCACCCCAAAAGGATTGGCTTTCATAGAAATGGCTGAAATAtgggtgtgtttatttatttagtgaatGGTTTCACTGCTgcttaatattatttttgtaaaaaaaaaatttttttaaaaaaaaggtgtttgcTGAAAAT

Function

NR:

description
PREDICTED: T-box-containing protein TBX6L

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0007525 somatic muscle development biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0001525 angiogenesis biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0001570 vasculogenesis biological_process
GO:0039023 pronephric duct morphogenesis biological_process
GO:0060809 mesodermal to mesenchymal transition involved in gastrulation biological_process
GO:0048389 intermediate mesoderm development biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925805.2 True 2018 mRNA 0.48 9 25021883 25025472

Neighbor

gene id symbol gene type direction distance location
cabin1 cabin1,LOC107747802 coding upstream 8769 24954083 ~ 25013114 (+)
cep78 cep78 coding upstream 68459 24944113 ~ 24953424 (+)
vps13a vps13a coding upstream 96444 24878786 ~ 24925439 (+)
rab11fip1a LOC108265531,LOC108426714 coding upstream 309797 24693337 ~ 24712086 (+)
adgra2 adgra2 coding upstream 330443 24632224 ~ 24691440 (+)
npy8br LOC108265010 coding downstream 58078 25083550 ~ 25099662 (+)
kctd9a kctd9,kctd9a,LOC107721077,LOC107678460,LOC107559451,LOC107698117,LOC107710853,LOC107553135 coding downstream 98129 25123601 ~ 25131707 (+)
ankrd39 LOC108264957,LOC108265164 coding downstream 129817 25155289 ~ 25157804 (+)
fgfr1a LOC108265400,LOC108426697,LOC103036914,LOC107710851,LOC107698118,LOC107553171 coding downstream 158019 25183491 ~ 25220173 (+)
lgi3 lgi3,LOC108265401,LOC108426696,LOC107698096,LOC107678470,LOC107559454 coding downstream 209622 25235094 ~ 25247013 (+)
LOC113533216 NA non-coding upstream 172339 24848068 ~ 24849544 (+)
LOC113533328 LOC108265709 non-coding upstream 238458 24730987 ~ 24783425 (+)
G138578 NA non-coding upstream 374432 24646779 ~ 24647451 (+)
G138535 NA non-coding upstream 519512 24502086 ~ 24502371 (+)
G138280 NA non-coding upstream 658122 24362949 ~ 24363761 (+)
G138907 NA non-coding downstream 251825 25277297 ~ 25284948 (+)
LOC113533374 NA non-coding downstream 284433 25309905 ~ 25333613 (+)
LOC117597843 LOC108261789,LOC108265915 non-coding downstream 395582 25421054 ~ 25428188 (+)
G138961 NA non-coding downstream 423143 25448615 ~ 25451577 (+)
G139166 NA non-coding downstream 647046 25672518 ~ 25683091 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1008102 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 1127158 23890416 ~ 23894725 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other upstream 1264769 23750417 ~ 23757114 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other upstream 1497178 23514586 ~ 23524705 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other upstream 1759892 23248348 ~ 23261991 (+)
LOC113533115 gnrh1 other downstream 107269 25132741 ~ 25134258 (+)
egr3 egr3 other downstream 526422 25551894 ~ 25558731 (+)
LOC117597866 NA other downstream 884103 25909575 ~ 25916807 (+)
car15 LOC108264895 other downstream 1374719 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 1537348 26562820 ~ 26567932 (+)

Expression


Co-expression Network