kctd9a (kctd9,kctd9a,LOC107721077,LOC107678460,LOC107559451,LOC107698117,LOC107710853,LOC107553135)


Basic Information

Item Value
gene id kctd9a
gene name kctd9,kctd9a,LOC107721077,LOC107678460,LOC107559451,LOC107698117,LOC107710853,LOC107553135
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 25123601 ~ 25131707 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925926.2
TCGTAATCGGAATACAATGTAGGTTGTTGCTGTGAAATTTTCGTCTTCACTTTAACAGGGATGAGTTTGCAGTAGTGAGCTCAGAGATAAGAAATTGTCTGTGAATTGTAAAAGTAGCAGTGTAAATCATTATATTTAACGCAAATAATGCGAAGGGTTACGCTTTTTGTCAATGGGACCTCCAAAAACGGCAAGGTTGTAGCAGTGTACGGGACTCTGTCTGATCTCTTATCTGTTGCCAGCAATAAACTGGGAATCAGGGCCACTAATCTGTACAATGGGAAGGGCGGCCTGATCGATGACATCGCCCTAATTAGAGATGATGATGTGTTGTACGTGTCAGAGGGAGATGCCTTCGTGGATCCTCAGAGTGAGGGAAGGGCTGCTGATGACCGCTCAGGTTCCCAGAGCGACTGGCTGACTCTGAATATCGGCGGGCGGCTCTTCACAACCACACGGAGTACGCTTGTGAGTAAGGAGCCTGACAGCATGCTGGCCCACATGTTTAGAGGGAACGATGTGTGGGGTAACAAGCGAGATGAGCGAGGCGCTTACCTCATCGACCGCAGTCCTGAGTACTTTGAGCCCATCCTGAACTACCTGCGACACGGCCAGCTTATTGTCAATGAAGGAATTAACTTActaggTGTACTGGAAGAAGCTCGTTTCTTTGGAATCGAGCAACTCGCTGAGCAGATAGAAGTTGCCATTAAGAACTCCCATCCCCCTGAGGACCACTCGCCCATCTCTCGGAAAGAGTTCGTACGGTTTCTGCTCGCCACGCCAACCAAGTCAGAGCTGCGCTGTCAGGGGCTGAATTTCAGCGGGGCAGACCTGTCTCGACTGGACCTGCGCTACATCAATTTCAAGATGGCCAACTTGAGCCGCTGCAACCTCACCTGCGCCAACCTGTGCTGCTCGAACCTGGAGAGGGCTGACCTCTCTGGGGCCAACCTGGATggtGCAAACCTGCAGGGTGTTAAGATGCTGTGCTCTAATGCCGAGGGAGCCTCACTGAGAGGCTGTAACTTCGAAGATCCATCAGGACTCAAAGCCAACTTGGAGgGTGCCAATCTGAAGGGTGTGGATATGGAGGGCAGTCAGATGACGGGGATAAACCTGCGCGTGGCTACGCTGAAGAACGCCAAGCTGAAGAATTGTAACCTGCGAGGAGCAACGCTAGCAGGCACTGATCTGGAGAACTGTGATTTATCCGGCTGTGACCTCCAAGAAGCCAACCTCCGTGGTTCGAACGTGAAGGGAGCCATCTTCGAGGAGATGTTGACTCCGCTGCACATGTCCCAGAGCGTGAGATAGCCAATCACGTGGCTCCCGCCTGAGCAGCCTTTCGCAGCTGCTCCGTTACGAATGTTAACCGCTCCCATTGGACCCATATGCAATATCGGCATTCCATGTCCTCACCCCACAGCTTTACTCTCTTGCACTAGTGCACATGCAGGGTGTTTATTTAGCACAGGTCTCTTGTAGGATTACAAGTACACATACATCATTGTCCATTTTGACCAATTTGTTATACCAAACcttatgtttatgtatgtgtatttatatttatgttggATTTAATCCACAATAAGTGTTGGCTTCCCGTATCAGTGCTAATGCGCTGCTGCTGAAAATCCTGTGTAGTCTGGAGGCTTCAATTATATCTGGGGATACGGATCCCAAGTGAGTGAAGTTTAGTGAATGTATACGTTTCTTATCATTAGATGTGGAAGTCACGAAGGTGAATGCAACCAAATACGTGTTATATTTGAGTTTATAACTCTGTCTCAGAGGGTTGGGGTGTAAACAGTAGCCTCTTAAGAATATGTGTGCAgaagcctgggaaaaccctttacGTGGTGAAACTGGATTTCTTTGATTTCTTCAGTCTCAGCGACTCAGTTTTTCCAGGCCGACACACAAATATGAAGAGGTTTCTGCTATGGTAATTGCAGGAATTGCTAGAGTTTGACTCTGAAATCTGAAGGAGGAGTTACTTTTAAAGCTCTTGTGCTTTGCTTTAGCTTTTCCGCACCATATCGTATCATGTATGCATGCTTAACACGACAAACGTATTGCTACCCATATACCATATATAATAGCTGACAAGCTTATCAAACTATTTTAAGGTTAGGTATAAAATTACATATGcaatataaatgtatgtttattaGCTCCCTGTGTGCACtgttcaaacagaaacaggatttttatttcagatctACCTCCCACACAAAACTGACTTTCGCTCTCGTCAGTCCTTTGGATTTCTTTCAAATCCTCATGAGAAGGCTTGAATAGATAGAAATGGGGATGTTGAATGAAAGACGGTTTACCAAAATGCAGTCGTGCCTAAcacagtggggtttttttttttttttttttttttaaaagattgtgTACAACCAGTAGCAAAATCACACTGGTTTGAATTCGTTCATTGTATTATTGTGCGATTGTTCATCATCAAACATCTCACGATTCCtttttgttattcattttttgGAAATTGTTTGACACCAAAAAGGGTTAAAAGGGTGCTTTACTTCATCCAGTGCTTCCCTATGcattagtgtatatatacaagCTGTCGTTCCCTACTTAGCACTTTTATGTATCGCTTCTTTGTTGTAGTACAACATAACAGCCCCCATTTCATGTGTTGCCTGTATCATTAATATCGACCCAGATTATTGCTGCGTGGTCAAACACTTGACCGGTTCAGCTGGAAATAATTTCTGACATGAGCTTAAAGCTAATGATATACAATATGCTGTTATGTCTCTTAGATGTAATCATAGGTACTTATTAAATGAAGGCAATCAGAAGCAGACTTTTGCACTTTTGAGTGCGATTCTCTGATTATCAGACCCTCACAGAAAGGGCACAcgctatttatttatgtatgtaagCAGGCTGTGTTTATGTAAGGTGTAAGAGAAGAGACGTCTTCTCCTCTCGCCTCACTGTTACGGAACTATATTTCCATAAACAGACTGTTATAAACAAA

Function

symbol description
kctd9a Predicted to act upstream of or within intracellular signal transduction and protein homooligomerization. Orthologous to human KCTD9 (potassium channel tetramerization domain containing 9).
kctd9 Enables cullin family protein binding activity; identical protein binding activity; and protein self-association. Predicted to be involved in intracellular signal transduction; protein homooligomerization; and protein ubiquitination.

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD9

GO: NA

KEGG:

id description
K21919 KCTD9; BTB/POZ domain-containing protein KCTD9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925926.2 True 3013 mRNA 0.44 12 25123601 25131707

Neighbor

gene id symbol gene type direction distance location
npy8br LOC108265010 coding upstream 23939 25083550 ~ 25099662 (+)
tbx16 LOC108265264 coding upstream 98129 25021883 ~ 25025472 (+)
cabin1 cabin1,LOC107747802 coding upstream 110487 24954083 ~ 25013114 (+)
cep78 cep78 coding upstream 170177 24944113 ~ 24953424 (+)
vps13a vps13a coding upstream 198162 24878786 ~ 24925439 (+)
ankrd39 LOC108264957,LOC108265164 coding downstream 23582 25155289 ~ 25157804 (+)
fgfr1a LOC108265400,LOC108426697,LOC103036914,LOC107710851,LOC107698118,LOC107553171 coding downstream 51784 25183491 ~ 25220173 (+)
lgi3 lgi3,LOC108265401,LOC108426696,LOC107698096,LOC107678470,LOC107559454 coding downstream 103387 25235094 ~ 25247013 (+)
chmp7 chmp7,LOC107710849,LOC107698119,LOC107559457,LOC107678414 coding downstream 118038 25249745 ~ 25256383 (+)
entpd4 entpd4,LOC107710847,LOC107747713,LOC107698120 coding downstream 126291 25257998 ~ 25269449 (+)
LOC113533216 NA non-coding upstream 274057 24848068 ~ 24849544 (+)
LOC113533328 LOC108265709 non-coding upstream 340176 24730987 ~ 24783425 (+)
G138578 NA non-coding upstream 476150 24646779 ~ 24647451 (+)
G138535 NA non-coding upstream 621230 24502086 ~ 24502371 (+)
G138280 NA non-coding upstream 759840 24362949 ~ 24363761 (+)
G138907 NA non-coding downstream 145590 25277297 ~ 25284948 (+)
LOC113533374 NA non-coding downstream 178198 25309905 ~ 25333613 (+)
LOC117597843 LOC108261789,LOC108265915 non-coding downstream 289347 25421054 ~ 25428188 (+)
G138961 NA non-coding downstream 316908 25448615 ~ 25451577 (+)
G139166 NA non-coding downstream 540811 25672518 ~ 25683091 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1109820 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 1228876 23890416 ~ 23894725 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other upstream 1366487 23750417 ~ 23757114 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other upstream 1598896 23514586 ~ 23524705 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other upstream 1861610 23248348 ~ 23261991 (+)
LOC113533115 gnrh1 other downstream 1034 25132741 ~ 25134258 (+)
egr3 egr3 other downstream 420187 25551894 ~ 25558731 (+)
LOC117597866 NA other downstream 777868 25909575 ~ 25916807 (+)
car15 LOC108264895 other downstream 1268484 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 1431113 26562820 ~ 26567932 (+)

Expression


Co-expression Network