alx3 (alx3)


Basic Information

Item Value
gene id alx3
gene name alx3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12586799 ~ 12597439 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926809.2
TACAGGTATCCAGAGCAACTCTAAGGCGTCTTCAAACCAGCGAAAGCTGCGTAAGTGCCCTGTGTTTGGAGATTGCTTGCAGAGATTGAACCAGCAACGTCAATATCAACAGTCATGAGTTACTTGAAGAAGGTCCTTACAGAATTAACCAGCTCTAcacgtgtgtgtgcagaagACGCTACAGGGGCGAGATGCTCTCCCTCTCTCGAGCGCGCACAAACAGCCTTTTCGCTGTTACTAGCAGCCAGCGCGCGCGCTCGGAGCGCCACAATGGAGACTGAGAGCTGTTTGTCTTTCGCTTCTGCTCCGACCAGGACGACGCCGGAGCAATCTCCAGGTCTGGAACATAATTCCGCCTCTTTCTTCCAATGCGACGAGCTGCAGAAATCGCCGCACGCTCACGTGGCGCAGAGGCACGCCGGGCGCGCGGACTTCTTCACTGCGCGCTACGCTGCCAACGGCGCGCGCGCGGACTTTACGCACAGCCTCGGCGGCTCCTCACCCAGAAAACACGGCAAGTTCCTGGAGACCAGCGCGACGGAGCAAAAACCCTTATCCTTACCCGAGAAGACCTCGTTTTACGACAGCAGCTCCAGCGTGGGGGAGAAGTCATTGCCTAAGCCTTTAGCTTATCCTGTTCTGGACTCTGAAAGCTGTGGCAGATTGAAAGAGTCTTCAGATGGACTAACCGAAGGAGACTCCATTGCAGACTCAATCAACCTGTCAGGCAAGAACAAGAAACGAAGAAACCGGACCACATTTAGTACCTTTCAGCTGGAAGAACTGGAGAAGGTCTTTCAGAAGACACACTACCCAGACGTGTATGCACGGGAGCAGTTGGCCCTGAGGACTGAGCTCACTGAAGCACGAGTGCAGGTGTGGTTCCAAAACAGAAGGGCTAAATGGAGGAAGCGGGAGCGCTATGGCAAAATGCAGGAAGTGCGAAATCACTTTGCTGCTACATATGATATCTCCCTGCTCCCTCGCTCCAATACCTaccagATGCAGGGTAACTTGTGGCCTGGAGGAGGAGGTGCAGGAGGGGCCGGTGGGGGCTGCGTCCTGGGCACAGACAGCATGCCTTCTTCCTGCATGGCTCCTTACCCTCATCCCCATGCACACCCCCATACTCATGGGCTTATGGGAATGTCCACATCCCCAACTCACCCTCcacatcatcctcatcctcaccaTCCAGGAATCAATGGCCTGTACTCCCTGCACAGCTTCCAGGGAGGTCTGGGGGCTCATTCGTTTGAGCCCAGCCCTGAGTCTGACTACAAGCCTTCAGGCCTGGTGGCACTGCGCATGAAAACCAAAGACCCTGGCAGCCTCTTGTCTTGGCCAACGTGACTGGTATTTAATTAGGACTGAGCCAACATATAATCAATGGATTCACACAGAAATCCAAACATTAGAGTTTTGGACAGAGTCCATCTCCCATCAAGCAAGAGGAACAGTTTCAGTCCTAATCCTTTACTAGATTTGCAGTTGatgtaatagtaataacaaaaataaatgccacCTGTATATGCTGTTTATGTTTCCATATGGGAGCATGTAATTGGTTACTGtcaatcttttttaaaatatgcaagCCAAAGGTTGCCTTAATGTtgaatttttaaagaatgtattCTATGAAATTAGCATAATTGTCCAAAGAAAAGTacgacatttttatttaaagtagtTAATCACATATTTCCAGTGTata

Function

symbol description
alx3 Is expressed in cranial neural crest; head mesenchyme; neural crest; neurocranium; and periocular mesenchyme. Orthologous to human ALX3 (ALX homeobox 3).

NR:

description
homeobox protein aristaless-like 3 isoform X2

GO: NA

KEGG:

id description
K09323 ALX3; homeobox protein aristaless-like 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926809.2 True 1717 mRNA 0.50 5 12586799 12597439

Neighbor

gene id symbol gene type direction distance location
kcnc4 kcnc4,LOC107731196 coding upstream 77133 12478618 ~ 12509666 (+)
ahcyl1 ahcyl1,LOC107679038,LOC107591817,LOC107668032 coding upstream 111049 12450275 ~ 12475750 (+)
nfyal nfyal,nfya,LOC108265435,LOC107668092 coding upstream 138815 12438112 ~ 12447984 (+)
sort1b LOC108265432,LOC108442120 coding upstream 153653 12414194 ~ 12433146 (+)
amigo1 amigo1 coding upstream 190139 12390255 ~ 12396660 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 coding downstream 49250 12646689 ~ 12649107 (+)
LOC113531099 pepa,LOC108442134,LOC108265564,LOC108414658 coding downstream 53786 12651225 ~ 12654683 (+)
LOC113531715 LOC108265567,LOC108414659 coding downstream 61589 12659028 ~ 12662145 (+)
adora1b adora1b,LOC108265083,LOC108414989,LOC103022582,LOC107711940,LOC107591868,LOC107680252,LOC107550463 coding downstream 178487 12775926 ~ 12783157 (+)
dclre1b dclre1b coding downstream 194777 12792216 ~ 12798367 (+)
LOC117597859 NA non-coding upstream 53541 12519894 ~ 12533258 (+)
G131282 NA non-coding upstream 360437 12226152 ~ 12226362 (+)
G131279 NA non-coding upstream 369585 12217004 ~ 12217214 (+)
G131061 NA non-coding upstream 868914 11716832 ~ 11717885 (+)
G130960 NA non-coding upstream 1034768 11548962 ~ 11552031 (+)
G131606 NA non-coding downstream 92728 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding downstream 103273 12700712 ~ 12701501 (+)
G131605 NA non-coding downstream 115186 12712625 ~ 12729522 (+)
LOC117597782 NA non-coding downstream 211684 12809123 ~ 12809738 (+)
LOC117597771 p38a,LOC104939458,LOC100692416,LOC108442382 non-coding downstream 339865 12937304 ~ 12941456 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 356798 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 590947 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 872767 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 890008 11677511 ~ 11696791 (+)
LOC113530800 LOC108266038 other upstream 952955 11622302 ~ 11633844 (+)
rbm15 rbm15,LOC107731203 other downstream 2259 12599698 ~ 12604705 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1107727 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 1292965 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 1352498 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 1724733 14322172 ~ 14323450 (+)

Expression


Co-expression Network