LOC113534601 (klhl12)


Basic Information

Item Value
gene id LOC113534601
gene name klhl12
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9521454 ~ 9537110 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927548.2
CTCTCGAAGATGGCGGCGCCGTTCACGCGTCTGGTCCTCGGTATCTACCTTCATCTCGTTACGTAGTGACGTGCAGTGTTTTGGTTGAGGAGAAGTTGCAGCTCCATCCCCTTCCACTTGAACCAACTTTTACCCCTTTTACTGGGAATTCTCACTTGGAAAACTTTATAGAACTGAGGGGAGACTCCACACGTCATTATTTTGCTTAGGTGTTGTTTTATCCAGCTCGATGTTTCGGTAGAGGATGAGTCGTGCTGGAATATGAAGCTCTCTGGGCGGATGGTGTAGCGCTAACGCTTAGCTACGTTTACACCCGatacggagtgtgtgtgtgtctctgcactTACTGaTCCACATCATACTTCATCATCCTGCACTGCCTGTGGAAGTGTCGCTCCCCTCCGTCGCCTGTTGTCATGGCGCCCAAGGACATCATGACCAATTCACACGCCAAGTCCATCCTGAATGCCATGAACGCCCTGAGGAAGAGCAACACTCTGTGTGACATCACCCTGAGGGTGGAGAACACAGACTTTCCCGCACACCGCATCGTGCTGGCTGCGTGTAGTGATTACTTCTGTGCCATGTTCACTAGTGAGCTGGCAGAGAAAGGGAAGTCCTTTGTGGATATTCAGGGTCTCACAGCCTCCACCATGGAGATCCTGTTGGACTTTGTTTACACAGAGACGGTGTTGGTTACTGTAGAGAATGTGCAGGAGCTGCTTCCTGCTGCCTGCCTGCTCCAGCTTAAAGGTGTGAAGAGGGCTTGCTGTGATTTTCTCAACAGTCAGCTAGACCCATCCAACTGTCTGGGCATCCGAGACTTTGCAGAGACACATAACTGCGTGGACCTGATGCAGGCAGCAGATCTTTTCTCGCAGAAGCACTTTTCCGAGGTGGTGCAGCATGAAGAGTTCATGCTCCTCAGTCAGAGCGAAGTTGAAAAGCTCATCAAATGTGATGAGATTCAGgtggaCTCTGAGGAGCCAGTGTTTGAGGCAGTGTTAAATTGGGTAAAGCACAACAGGAAGGAACGAGAGCCATACCTGGCAGACATGCTGGAATATGTGCGCATGCCTCTGCTCACGCCACGCTACATCACTGACGTCATCGACTCTGAGCCTCTTATTCGTTGTAGTCTAGCCTGCCGAGACCTTGTGGATGAAGCCAAGAAGTTTCACCTGAGGCCCGAGTTACGCAGTGAGATGCAGGGGCCTCGAACGCAACCCAGACTAGGTGCCAAAGAAGTGCTGTTGGTGATCGGTGGGTTTGGCAGTCAGCAGTCACCCATTGATGTTGTGGAGAAATATGATCCCAAAACCCAGGAGTGGAGTTTTCTACCTAACATTGCACGGAAACGCCGCTATGTTGCCACTGTTGCCCTCAATGACCGTGTGTATGTGATTGGAGGCTATGATGGTCGGTCACGTCTCAGTTCAGTCGAGTGTTTGGACTACACGGCAGATGAAGATGGAGTTTGGTACACCGTCGCCACAATGAACGTTCGACGAGGCCTGGCAGGAGCAACTACACTAGGAGatatGATTTACGTGGCTGGGGGTTTTGACGGCAGTCGGCGGCACACCAGCATGGAGAGATACGACCCGAACATTGATCAGTGGAGCATGCTGGGGGATATGCAGACAGCCAGAGAAGGAGCTGGGCTTGTAGTGGCCAGTGGTCTCATTTACTGCTTGGGTGGTTATGATGGTTTGAACATCCTTAATTCGGTGGAACGCTATGACCCACACACCGGTCACTGGACTAGCGTCACTCCCATGGCTAACAAACGTTCAGGGGCAGGGGTGGCTCTGCTAAATGACCACATTTACGTAGTTGGAGGATTTGATGGTACGGCTCACCTGTCCTCTGTAGAGGTATACAATATCCGGACAGACTATTGGACTACTGTGGCACCCATGACCACTCCACGCTGCTATGTTGGAGCCACCGTGCTTAGGGGACGACTGTACGCCATTGCAGGATATGATGGCAACTCCCTGCTCAGCAGTATCGAGTGTTACGACCCTGTACTGGACAGCTGGGAGGTAGTGACCTCCATGGCTACACAACGCTGTGATGCAGGGGTTTGTGTGCtcagagaaaaatgaaaacatggctgccagACACTAAGCAGGCAAAGACTCACTGGAATTGGTTTTTGGAGTATTGATTGGCAGCTAACACCTATGGACTGGTCTACTATGTTGCCATGACTATGTGCCACGTGTATTAGCATGGAAGAGGAAGCAACCTGGAAACACAGATCACATGAACACCCCTTTTATTATTATGCTGTAGTTTTACCTTCAGACCTTAGTTGTGTTGCCATGCTTGTGATGGGCACACTGTGTTGTCTGCGAAAATGTCTGCACTCTCCATCCATTACCCTGTGGTTTTGTGGTGTCTGAGGTTATCTGTGAGGTTCATGTGGATGAAGTCTACgaagtgcaatattttaaactaCTGATGTGTTAAAGACTAAAAATGCAGAAGAACACTATAATGTGTGCTTCAGCAGTTGCTGCTTTTATACCTTATTGCCCTTGTGGGCAAATATTtcaacacatcacaccacaggCCTCCTGGCTTTGCTACATAGGAATACAAGGTATGATTGAAAATATGGACATGTTAGGATTGTAAAGGAAGACATCACTGCTTCTGACTGGAAATGAACAATGTACAAGGTTTCCATGTTGGCACCAATATGTCTTCACTGTCCTTTCCTGCTTTCCTGGTCTCCCAGCCTGTATGAAGAGAAGTAAGAACCCTGCTCATTGCCTCACATTTAAAGGTACAGTaagtagaaataaataaatgttaagaaaatattattaacacTACTAGAAGTCTGGaatagtttctttcttttttttttaatgaaggaaGTTTCAAACCTTTTCCACAGTTATGTGACCAGCTTTGTTTCATAGCTAAGATGCTAgcaatgaataataaaaaatatgtggGGGAAAAGTTACTTGGTGTACCTTTAAATCATTGGGCTTGCCATACAGTGAACACCACTATCATGTTTGTACTGTGtattaagccttttttttcagtttaagtGCTTTTAAACGTGAATCTGAATGAATGTATGGATTTACTTAAATGTTTGTTAAACACAGATTTCAAATATCtgttaattatttgtattattatgaacaaaaatgctcatttttatgaGTGACCAATGACATTTGCTGTTGTGTAATGTTTTGCGATATGTATGGTGCCAGGACTGACATAATTGTAAGTTGAATAGTTTACCACCAAGTGTAATAAAATGTCTGTACATCA

Function

symbol description
klhl12 Acts upstream of or within Wnt signaling pathway; anterior/posterior pattern specification; and convergent extension involved in axis elongation. Predicted to be located in cytoplasmic vesicle. Predicted to be part of COPII vesicle coat and Cul3-RING ubiquitin ligase complex. Predicted to be active in COPII-coated ER to Golgi transport vesicle. Orthologous to human KLHL12 (kelch like family member 12).

NR:

description
PREDICTED: kelch-like protein 12 isoform X1

GO:

id name namespace
GO:0048208 COPII vesicle coating biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0006513 protein monoubiquitination biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0030134 COPII-coated ER to Golgi transport vesicle cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component

KEGG:

id description
K10450 KLHL12, C3IP1; kelch-like protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927548.2 True 3306 mRNA 0.46 12 9521454 9537110

Neighbor

gene id symbol gene type direction distance location
adipor1b adipor1,adipor1b,LOC108425077,LOC107679819,LOC107594512,LOC107711855 coding upstream 2196 9510939 ~ 9519258 (+)
mc3r mc3r,LOC108265186,LOC108425022,LOC103045867,LOC107751456 coding upstream 225971 9294380 ~ 9295483 (+)
LOC113526950 LOC108266051 coding upstream 340624 9175099 ~ 9180830 (+)
pym1 pym1,LOC102777374 coding upstream 351878 9165978 ~ 9169576 (+)
sema3b sema3b,LOC107717529,LOC107556489,LOC107669651 coding upstream 518630 8950214 ~ 9002824 (+)
tuba5 tuba8l,LOC108425079,LOC108265838,LOC107711852,LOC107679810,LOC107594520,LOC103031418 coding downstream 1723 9538833 ~ 9543279 (+)
kdm5bb LOC108265643,LOC108425081 coding downstream 10196 9547306 ~ 9573038 (+)
LOC113536035 LOC108265641 coding downstream 37272 9574382 ~ 9582740 (+)
LOC113526970 NA coding downstream 57680 9594790 ~ 9601084 (+)
LOC117597804 NA coding downstream 62711 9599821 ~ 9602488 (+)
G129849 NA non-coding upstream 25724 9450562 ~ 9495730 (+)
G129850 tmem189,LOC107556313,LOC107751443,LOC107669672,LOC108425075,LOC107711858 non-coding upstream 67045 9453034 ~ 9454409 (+)
G129831 NA non-coding upstream 183504 9324708 ~ 9337950 (+)
G129805 LOC108265845 non-coding upstream 209003 9309503 ~ 9312451 (+)
G129707 NA non-coding upstream 386519 9119938 ~ 9134935 (+)
G129971 NA non-coding downstream 63085 9600195 ~ 9602532 (+)
G129996 kcnd3 non-coding downstream 134957 9672067 ~ 9672335 (+)
G130021 NA non-coding downstream 178546 9715656 ~ 9715868 (+)
G130231 NA non-coding downstream 496240 10033350 ~ 10033565 (+)
G130285 NA non-coding downstream 548451 10085561 ~ 10147134 (+)
cebpb LOC108265421 other upstream 50175 9462088 ~ 9471279 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 1208798 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 1549705 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 1659884 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 2090457 7424001 ~ 7430997 (+)
LOC113532719 LOC108265185 other downstream 123705 9660815 ~ 9665693 (+)
G130390 NA other downstream 820836 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 1006809 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 1145968 10683078 ~ 10696831 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 1169609 10706719 ~ 10741425 (+)

Expression


Co-expression Network