tuba5 (tuba8l,LOC108425079,LOC108265838,LOC107711852,LOC107679810,LOC107594520,LOC103031418)


Basic Information

Item Value
gene id tuba5
gene name tuba8l,LOC108425079,LOC108265838,LOC107711852,LOC107679810,LOC107594520,LOC103031418
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9538833 ~ 9543279 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927664.2
CGCGCGCGCTGCTTTTCACACTGCTGTGTTGGCGGAGACACGTAACGCGTCTGCAATCAACGGAGCCACaaccctttctttttcttttttttacgcGCGTTTCGCGTTGATAATTTACCTTTTTTCGCATTTTCGAAAGAATTTAGTGACATCCTAACCAAAATGcgTGAGTGCATCTCCATCCACGTGGGCCAGGCTGGTGTGCAGATTGGCAATGCATGCTGGGAATTGTACTGCTTAGAGCATGGTATCCAGCCTGATGGCAATATGCCAAGCGATAAGACCATTGGTGGCGGGGACGACTCCTTTAACACTTTCTTCAGCGAGACTGGCTCTGGAAAGCATGTGCCACGAGCTGTGtttgtggatctggagcctgcAGTCATTGATGAGGTGAGGACTGGCACCTACAGGCAGCTTTTCCACCCAGAGCAGCTCATCTCTGGGAAGGAAGATGCAGCTAATAACTATGCCCGTGGCCACTACACTGTTGGCAAGGAAATCATTGACATGGTTCTGGAACGTGTCCGTAAACTGACTGACCAGTGTACCGGGCTCCAAGGATTCCTGATCTTCCACAGTTTTGGTGGAGGCACTGGATCAGGATTCACCTCCTTGTTGATGGAGCGCCTGTCTGTTGACTATGGCAAGAAGTCCAAGCTGGAGTTTGCCATCTATCCAGCACCTCAGGTCTCCACTGCTGTCGTGGAGCCATACAACTCTatcctcaccacacacaccacactggaGCACTCGGACTGTGCCTTCATGGTGGACAACGAGGCAATCTATGACATCTGCCGTCGCAACCTGGACATCGAGAGGCCAACATACACCAACTTGAACCGGCTCATCGGCCAGATTGTCTCCTCCATTACGGCATCCCTGCGCTTTGATGGAGCACTCAATGTCGACCTGACTGAGTTTCAGACCAACCTGGTGCCATATCCCAGAATCCATTTCCCCCTGGTCACCTATTCACCAATCATCTCAGCTGAGAAGGCCTACCATGAGCAGCTCTCTGTTGCAGAGATCACAAGTGCCTGCTTTGAGCCATCCAATCAGATGGTGAAGTGTGACCCACGCCATGGCAAGTACATGGCCTGCTGTATGCTGTACCGTGGAGATGTGGTGCCTAAAGATGTGAATGCTGCCATTGCCAACATCAAGACTAAACGTTCCATCCAGTTTGTGGACTGGTGCCCAACTGGATTCAAGGTTGGCATCAACTACCAGCCACCTACAGTGGTTCCTGGAGGAGACTTGGCGAAGGTGCAGAGAGCCGTGTGCATGCTGAGCAACACCACGGCCATCGCTGAGGCCTGGGCACGTCTGGACCATAAGTTTGACCTGATGTATGCCAAGCGTGCATTCGTGCACTGGTATGTGGGTGAAGGCATGGAGGAGGGCGAGTTTTCTGAGGCCAGAGAGGATCTTGCAGCTCTTGAGAAAGATTATGAAGAGGTAGGCACAGAGTCTgttgaagatgaagaggaaggagaagagTATTGATCTCCAGAAGGCTAGTGGTAGAAACACTCTTGCCTCTCACTGCCAGGCTGCCACAGTTTGTCCCAAAGGAAAGGGAGCTAACGTCTGTCTTTTCTATGTATCTGTTTTATTCTGTCCTACAGTCAGCGTGTCATTCATTCCATTTACTTTTGTTTCCCAGAGTTCAAGTAATTGCTGAATTACCAAAGatgatttggttttatttggcatttttctTAACACTGCTAACTGTCTATATGGGTCTGTTTCTACCAGCTGTGCAATGTTTCTGAATAAAGTCCCTTTAAATGA

Function

NR:

description
PREDICTED: tubulin alpha chain-like

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927664.2 True 1803 mRNA 0.50 5 9538833 9543279

Neighbor

gene id symbol gene type direction distance location
LOC113534601 klhl12 coding upstream 1723 9521454 ~ 9537110 (+)
adipor1b adipor1,adipor1b,LOC108425077,LOC107679819,LOC107594512,LOC107711855 coding upstream 19575 9510939 ~ 9519258 (+)
mc3r mc3r,LOC108265186,LOC108425022,LOC103045867,LOC107751456 coding upstream 243350 9294380 ~ 9295483 (+)
LOC113526950 LOC108266051 coding upstream 358003 9175099 ~ 9180830 (+)
pym1 pym1,LOC102777374 coding upstream 369257 9165978 ~ 9169576 (+)
kdm5bb LOC108265643,LOC108425081 coding downstream 4027 9547306 ~ 9573038 (+)
LOC113536035 LOC108265641 coding downstream 31103 9574382 ~ 9582740 (+)
LOC113526970 NA coding downstream 51511 9594790 ~ 9601084 (+)
LOC117597804 NA coding downstream 56542 9599821 ~ 9602488 (+)
LOC117597803 LOC108265688,LOC108265689 coding downstream 67514 9610793 ~ 9614695 (+)
G129849 NA non-coding upstream 43103 9450562 ~ 9495730 (+)
G129850 tmem189,LOC107556313,LOC107751443,LOC107669672,LOC108425075,LOC107711858 non-coding upstream 84424 9453034 ~ 9454409 (+)
G129831 NA non-coding upstream 200883 9324708 ~ 9337950 (+)
G129805 LOC108265845 non-coding upstream 226382 9309503 ~ 9312451 (+)
G129707 NA non-coding upstream 403898 9119938 ~ 9134935 (+)
G129971 NA non-coding downstream 56916 9600195 ~ 9602532 (+)
G129996 kcnd3 non-coding downstream 128788 9672067 ~ 9672335 (+)
G130021 NA non-coding downstream 172377 9715656 ~ 9715868 (+)
G130231 NA non-coding downstream 490071 10033350 ~ 10033565 (+)
G130285 NA non-coding downstream 542282 10085561 ~ 10147134 (+)
cebpb LOC108265421 other upstream 67554 9462088 ~ 9471279 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 1226177 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 1567084 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 1677263 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 2107836 7424001 ~ 7430997 (+)
LOC113532719 LOC108265185 other downstream 117536 9660815 ~ 9665693 (+)
G130390 NA other downstream 814667 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 1000640 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 1139799 10683078 ~ 10696831 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 1163440 10706719 ~ 10741425 (+)

Expression


Co-expression Network