fsd1 (fsd1,LOC107750605,LOC107717569,LOC107657921,LOC107585848,LOC107700007)


Basic Information

Item Value
gene id fsd1
gene name fsd1,LOC107750605,LOC107717569,LOC107657921,LOC107585848,LOC107700007
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2369339 ~ 2388945 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927927.2
TCGATTATAGCATTGGTTCGTTTTTTTAAATCGAATTGAAAATGTACTTCCGGTACCGTCGATGACGTAATCCCGCACCTCGGAGCTCTGTGCTGTATAACAGCATCATCAGTACTGAAGCAGCTCTGCAGGATCtgggagaaaaataaataaacaaataaagaagaTTAAAGCGTCGGACGCAGGAGTCACGGTGCTGCGACATGGACGAGCAaaaggagtCTCTCCAAAAGATCGTCAACACATTGGCGCTGAAAAATGAGGAGATCCAGAACTTCATCTGCTGCCTGAAGCAAAATCTGCAGAACCTGGAGgcgaaCTCCACCCGTGTTCAGGAGGATCTGGAGTCGGAGTTCAGCTCTCTGCATGCTGTTCTGGACGAGCTGAAGGAGGGAATGATGACCCGAATCAAACAGGAGCGAGCCAGTCGCACGTATGAGCTACAGAATCAGCTGAGCGCCTGTACGAAAGCTCTGGAGAGTTCTGAGGAGCTGCTGGAAGTGGCCAATCAGACGCTCTGCTCGTCTGAGACGGATGGCTTCAATCAGGCGGCTAAAGACATAAAGGATAGTGTTACCATGGCCCCAGCCTTTCGCCTCTCTTTAAAAGCTAAAGCGAGTGACAGTATGAGTCACCTGATGGTGGACTTCACTCAGGAGCGCGAGGTGCTTCGGGCCATCAGATTCCTCCCAGTTCCTGCTACTCCAGAGATCCAGGAGTCTGAGTGTCAGGTGTATGATAACTCCGTCATGGTGCTGTGGACTTTACCGGAACCAGACTCTAAAATCGACCACTACATCCTGGAGTACCGGCGAACGAACCACGAGGGGCCTCCGCGCGCCCGGGAGGAGCATCCGTGGATGGTGGTGGAGGGGATTAAAGAGACGGAGTACACGCTCACAGGCCTTCGCTTCGACACGCGCTACATGACGTTTCGGGTGAAGGCGTGCAATAAGGCTGTAGCAGGAGAGTTCTCCGAGCTGGTTACTCTGGAGACAcatgCGTTCGTGTTTAAGCTGGACGCGGGTTCAGCGCACCAGAACCTGAAGGTGGAGGACCTGATCGTGGAGTGGGACAGCAGCGGGGGGAAAACCCCGATCCAGGACATCCGCAAGGAAAAGAACAGAACCAGCTCTCCTATGCACTCTCCGGCCAGGACGGCCATGATGTCTCCGAAGAGAGCGCCTTCAGCCCGGGTGGGTCGAGACCGCTTCACGGCCGAGTCCTACACTGTTCTGGGTGACACCATGATCGATTCAGGGCAGCACTACTGGGAGGTTCGGTTCGATAAAGAGAGCAAGGCGTTTGCTGCAGGCGTGGCACTGCGTTCTCTCGGCCGATTCGATCAGCTCGGGAAGAGCAGCGCCTCCTGGTGCATCCATCTGAACAACTGGCTCCAGCAGAGCCTCAGCGCCAAGCACAACAACAAGGCCCGCACGCTGGACTGCCCCATCCCCGAGCGCATGGGCATCTACTGCAACTACGACGAGGGCACATTGTCTTTCTACAAcgccaaaaccaaaacactcATGCATACTTTTAGGACCAAGTTCCAGCAGCCGGTTATTCCAGCTTTTATGGTGTGGAATGGGAGTTTCTCGGTTCAGACGGGTCTGCAGGTTCCTACCATAGTGCAGTGCGGCCAGAAAAGGAACAGCAACGCCAGCAGCTCCAACGCCAGCCTTACCTAGACCTCCACTCGTCCTCCTCCACCCGTCTTCCTCCACTGCTTTATAGAACTGTCGCCTGTCACTCGGGCGCTTAGTGGCAGCGGAAATTTCCCACATTTTTACCCCAGTGTTTGgaaatggagaggaaaaaaagagagaagcacCAGCTCTCTGTGCCTTTCAGCTTTCTCATTTCATCCATGAACATGTGAGATTTACACACAGCAGTATGACTGTAATTAAGTTGCTTGGTTCtgtcaagtcttttttttttgtcactgatAAAAGTGAGGTGACATTTAGGCTGTTTAAGACTTGAAATGTTCTCACGTGTACAAATGAAATAATCTTTGTGTATGTGAGAGGTAAAGTGATGCTCACATTCATCTTATGTGTGAGGtgaatttgaaaatgttttatgtatacATGAGAGAGTTCGTGGGTATATGTGCGGTAAAATTTTGAACGAGGGTTTCTGTGTGAATGCGAGAGCATTTTGTCGGCATATGTAAGGTGAAATTAAGTGTGAGTTTTTTGTGCAAATACAAGTGCATTTTGTGGGTGAATCTGAGGTATAATTGTGAATTTGAGTCTTTTTTGTGAATGTGCGAGCATTTCTGGGCATAATTGGGGTCAGATGGtgaatgtgagagcattttgttGGGTATACGTGAGGGGAAAATTGTGAATGCGAGTGTTTTTGTATGAAAGCGAGAGCATTTTGTAGGTGTGAGATAAAATTATGAGAATGtgagtgtttttgtgtgaatgtgtgagtatTTTGTGGGTATATTTGGGGTAAAATTGCAAATGTGAAAGTATTTTGTGGGCCTGTGTGAGGTAAAATCGCGAATACaagtgttttgtgtgaatgCGAGAGCAACTTATGGGTACATGTTTGAAATAAATGCTCTCATATACACAATTCTATGTATATGAAAGGtaaatgtgagtgtgagagcattttatgtatttgtaagGACTTTTTTTAGGTGTGTGACGGATAAATTCAACAGCCTGAATGCCACCTCATAGCAAACCAAAATATTATGTATGTTTGTTctattccttttcttttttttttgatgagttCCTTGTGTCAGCTCGGCCATTTAATCCACTTCAGTCGTCTGTCTTGTTGTTTGGCTTTGTTTTAACGCATTTTCGCACTGAATGTCTTTGATCATAGGCGTCTAATTCTGCTGAATGCTTCTCAAGTAAAATCTGTGTTATATTCAGAACCAGTTTAGTACACTAACTTAATACTAGTAGTAAAACACTTCGTATAGAATATATACAACATTGCTGTGCCAGCAGAAGTCCACGTGGAGGGGGGAAAGGACTACACGAGACgaaaagtgtgtgcgtgtgtgtgcgtgtgtgtgcgtgcgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagatgatgtaCCATAGTGTATTGCTGCGTTTGTAATGTTTCTACGCTTTCAACAAACAGGTCGTACTTGTTTTTGTTGCACACAGATGTGTAGGACAAAGGAGAAAATTCCAGTTACCTCcacaaatatgtacaatattttatcatgttttcgGATTACGTGCACGATGACCATGTTACTAAATATTACTCTTTATTCTCGCTAACGCCCTACTGCAATTTGCTATATATCTCTGTATATAAGCCTTTACTGCTTTTATGCTGAAACTGTAGTATTATAACAGACTGCAAAGTCTTCGATTTTCCCACGTTGTAATCCTGTGCAAGATAATAAAACACTAAGACGGCCATTTGTGGTTGTGTTTTTGACAACCTTCATCCAAGTTACAGTTTTGAGCTAGCTAGCGATCAGAGATATGTTTACCTAttgcagtaatgtttttttcacGGCAACACCAGCTTGATTAATACCTTAATTTAGTGAATACAATGACAACCCGTCTGTGTAACGctaacagtcgttctctcatcagcctctctttctttctctctcttgaagttaatga

Function

symbol description
fsd1 Acts upstream of or within Notch signaling pathway and cilium assembly. Predicted to be located in several cellular components, including cleavage furrow; microtubule cytoskeleton; and nucleus. Orthologous to human FSD1 (fibronectin type III and SPRY domain containing 1).

NR:

description
PREDICTED: fibronectin type III and SPRY domain-containing protein 1

GO:

id name namespace
GO:0005815 microtubule organizing center cellular_component
GO:0005874 microtubule cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K24489 FSD1; fibronectin type III and SPRY domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927927.2 True 3682 mRNA 0.46 13 2369339 2388945

Neighbor

gene id symbol gene type direction distance location
ccdc181 ccdc181 coding upstream 3094 2360954 ~ 2366245 (+)
prrg1 prrg1,LOC108265743 coding upstream 21880 2337341 ~ 2347459 (+)
tab3 tab3 coding upstream 64556 2289451 ~ 2304783 (+)
LOC113535241 LOC108265201 coding upstream 492824 1853372 ~ 1876515 (+)
atp2b3a atp2b3a,LOC108265719,LOC107755305,LOC107758015,LOC107699155,LOC107603076 coding upstream 517789 1820191 ~ 1851550 (+)
mpnd mpnd,LOC106591182,LOC107750615 coding downstream 20380 2409325 ~ 2418955 (+)
LOC117597819 NA coding downstream 251766 2640711 ~ 2642606 (+)
ptgesl ptges2,LOC103370734,LOC104955211 coding downstream 306018 2694963 ~ 2704063 (+)
npl npl coding downstream 508354 2897299 ~ 2906546 (+)
LOC113535040 NA coding downstream 517780 2906725 ~ 2910360 (+)
G125362 cpox non-coding upstream 10518 2357213 ~ 2358821 (+)
G125334 NA non-coding upstream 18338 2349215 ~ 2351001 (+)
G125308 NA non-coding upstream 55398 2280212 ~ 2313941 (+)
G125332 NA non-coding downstream 32613 2421558 ~ 2426331 (+)
G125337 sh3gl1,LOC108265290,LOC107750655,LOC107700047 non-coding downstream 42781 2431726 ~ 2432649 (+)
G125497 NA non-coding downstream 260744 2649689 ~ 2651252 (+)
G125483 NA non-coding downstream 283998 2672943 ~ 2675991 (+)
G125484 rgl1,LOC107717560 non-coding downstream 316896 2705841 ~ 2745563 (+)
alkal1 LOC108265007 other upstream 137199 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 381767 1877028 ~ 1987572 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 562549 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 1022754 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 1167413 1155413 ~ 1201926 (+)
LOC113535041 edem3 other downstream 456764 2845709 ~ 2918231 (+)
znf692 znf692 other downstream 947435 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 1056070 3445015 ~ 3537289 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 1295948 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 1361559 3750504 ~ 3777490 (+)

Expression


Co-expression Network