LOC113534995 (LOC108264986,LOC108439652,LOC107695253,LOC107585931,LOC107548917,LOC107676994)


Basic Information

Item Value
gene id LOC113534995
gene name LOC108264986,LOC108439652,LOC107695253,LOC107585931,LOC107548917,LOC107676994
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 3634700 ~ 3658044 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928033.2
cacatacagtagtgCTTGGCAAGCACAGATGTCATACATCAAGCCAGATCAGAGTTCATCACCTCCGGAGACTGTACACGTTTGTCACTGACGGTTGATCTGAGCTACGctcctcactctctccatctctattTCTCCCTTTGTGGAGCCTCCTGGCTTTGACTATAAATACTCCTGACCCGGCTTCGTCATGATCGACCCCGCGGCCGAGCTGCCCTTCTTCTACGGCAGCATCAGCCGTTCAGATGCCGAGCAGTACCTGAAGCTGGCAGGGATGGGTGACGGACTCTTCCTGCTGCGTCAGTGTCTGCGCAGCCTGGGCGGATACGTGCTGTCTCTCGTCTGGAACCTGGAGTTTTATCACTACCCGGTGGAGAAGCAGCTGAATGGGACTTACTGCATCGCGGGTGGAAAGGCCCACTGCGGCCCAGCCGAGCTCTGCGAGTACTACAGCAAGGACGCAGATGGCCTGGTGTGTGTGCTCAAGAAGCCGTGCCTCCGCTCCGCAGAAACACCCATCAAGCCCGGCGTCTTCGAAAACCTTAGGGACAACATGCTGCGCGAGTACGTCCGGCAAACCTGGAACCTGGAGGGCGAGGCCATGGAGCAGGCCATTATCAGTCAGGCGCCTCAGTTAGAGAAGCTGATAGCCACCACGGCCCATGAGAAGATGCCCTGGTACCATGGCAGAGTCCCTCGTCAGGAAGGAGAGCGGCGACTCTACACGGGCTCTCAGCCAGACGGCAAGTTCCTagtgagagaaagagatgagtcTGGCACCTTCGCCTTGTCAGTGATGTATGGAAAGACCGTGTACCATTATCAGATCCTTCACGATAAATCAGGCAAATACTCCATGCCGGAAGGCACCAAGTTTGACACCGTGTGGCAGCTGGTTGAGTATCTGAAAATGAAGCCCGACGGTCTGGTCACGTTACTGCGGGAACCCTGCCTGAACCAGAACAGCGCAAACCAGACTCCAGCCGTGCCTGCATCGaggagAGCCAGAACTAATGGCTACACACCGCCCCctgaagtTCCTGGAGCGTGTAAGACTCTGACCTCGGGGCTGATGGACCGTCAGGCTCTGCCGATGGACAGCGATGAGTTCGTCAGCCCGTACGCCGATCCGAAGGAGCTCCAGGACAAGACGCTCTTCATTAAGCGTGATAAGCTGATGGTGGACGAGGTGGAGCTTGGATCGGGAAACTTCGGCTGCGTGAAGAAAGGCGTCTATAAGATGAAGAGcaAACACATCGACGTAGCCATAAAGGTTCTGAAGAGTGAGAACGAGAAGGCGGTGAAGGACGAGATGATGCGTGAGGCCGAGATCATGCACCAGCTGGATAACCCCTACATAGTGCGCATGATCGGCCTGTGCCAGGCGGAGGCTCTGATGCTGGTGATGGAAATGGCACCTGCCGGGCCGCTCAACAAATTCCTCTCCAGCAGGAAAGATCAGGTGTCGGTGGATAACGTGGTGGAGCTGATGCACCAGGTCTCATTGGGGATGAAGTATTTAGAGGAGAAGAACTTCGTGCACAGAGATTTGGCAGCTCGAAATGTGCTGCTGGTCAACCAACATTATGCCAAGATCAGCGACTTCGGCCTCTCCAAAGCGCTCGGCGCAGACGATAACTATTACAAGgCACGCACATTAGGCAAATGGCCTCTAAAATGGTACGCTCCAGAGTGCATCATGTACCACAAGTTCTCCAATAAAGGCGATGTGTGGAGCTTTGGGGTTACCATGTGGGAGGCGTTTTCCTATGGAGGAAAACCTTACAAGAAAATGAAGGGTCCCGAGGTGATCAGCTTCCTCCAGAACGGCAGTCGCATGGACAGTCCAGCTGGCTGCCCAGAGCCCATGTACGAGCTGATGAAAGAATGCTGGACATTCAAGTATGAAGACAGGCCAGGCTTCGTGAAAGTGGAGGAGAAGATGAGGACCTACTATTACTCCATTTCTAAGAAGAATGCCACTGAGGCAAATGGAGAGGCAGAGAAACCGGATAATTAGCAGCTCAGCTCTGaaagtttaatgtttttttttcaccaggaATTAGTAACAGCATGATGTGTTAAATCTTGTGTGTGAAAGAAGGCACAGAAATACAAAATCTACGCAGATTCGTCGCATTAGCCTGTTACAGGACTCGCTGTGCTTCAGAGCTCGAAATGTCCAAGCGAAAGCTTTGTGTTTATGAAATACATGAAGGCG
>XM_026928034.2
cacatacagtagtgCTTGGCAAGCACAGATGTCATACATCAAGCCAGATCAGAGTTCATCACCTCCGGAGACTGTACACGTTTGTCACTGACGGTTGATCTGAGCTACGctcctcactctctccatctctattTCTCCCTTTGTGGAGCCTCCTGGCTTTGAAACTGTGACCTGTCCACCTCCCACACAGTGGAAAGTATGTATCATAAAATACTGAACTGAGGGAGCAGACGGAGGGAGGAAACAGTCTGATAAGGAGTGAAGGACcgaaaaacacaacataaatCACAAGAAAAGACTATAAATACTCCTGACCCGGCTTCGTCATGATCGACCCCGCGGCCGAGCTGCCCTTCTTCTACGGCAGCATCAGCCGTTCAGATGCCGAGCAGTACCTGAAGCTGGCAGGGATGGGTGACGGACTCTTCCTGCTGCGTCAGTGTCTGCGCAGCCTGGGCGGATACGTGCTGTCTCTCGTCTGGAACCTGGAGTTTTATCACTACCCGGTGGAGAAGCAGCTGAATGGGACTTACTGCATCGCGGGTGGAAAGGCCCACTGCGGCCCAGCCGAGCTCTGCGAGTACTACAGCAAGGACGCAGATGGCCTGGTGTGTGTGCTCAAGAAGCCGTGCCTCCGCTCCGCAGAAACACCCATCAAGCCCGGCGTCTTCGAAAACCTTAGGGACAACATGCTGCGCGAGTACGTCCGGCAAACCTGGAACCTGGAGGGCGAGGCCATGGAGCAGGCCATTATCAGTCAGGCGCCTCAGTTAGAGAAGCTGATAGCCACCACGGCCCATGAGAAGATGCCCTGGTACCATGGCAGAGTCCCTCGTCAGGAAGGAGAGCGGCGACTCTACACGGGCTCTCAGCCAGACGGCAAGTTCCTagtgagagaaagagatgagtcTGGCACCTTCGCCTTGTCAGTGATGTATGGAAAGACCGTGTACCATTATCAGATCCTTCACGATAAATCAGGCAAATACTCCATGCCGGAAGGCACCAAGTTTGACACCGTGTGGCAGCTGGTTGAGTATCTGAAAATGAAGCCCGACGGTCTGGTCACGTTACTGCGGGAACCCTGCCTGAACCAGAACAGCGCAAACCAGACTCCAGCCGTGCCTGCATCGaggagAGCCAGAACTAATGGCTACACACCGCCCCctgaagtTCCTGGAGCGTGTAAGACTCTGACCTCGGGGCTGATGGACCGTCAGGCTCTGCCGATGGACAGCGATGAGTTCGTCAGCCCGTACGCCGATCCGAAGGAGCTCCAGGACAAGACGCTCTTCATTAAGCGTGATAAGCTGATGGTGGACGAGGTGGAGCTTGGATCGGGAAACTTCGGCTGCGTGAAGAAAGGCGTCTATAAGATGAAGAGcaAACACATCGACGTAGCCATAAAGGTTCTGAAGAGTGAGAACGAGAAGGCGGTGAAGGACGAGATGATGCGTGAGGCCGAGATCATGCACCAGCTGGATAACCCCTACATAGTGCGCATGATCGGCCTGTGCCAGGCGGAGGCTCTGATGCTGGTGATGGAAATGGCACCTGCCGGGCCGCTCAACAAATTCCTCTCCAGCAGGAAAGATCAGGTGTCGGTGGATAACGTGGTGGAGCTGATGCACCAGGTCTCATTGGGGATGAAGTATTTAGAGGAGAAGAACTTCGTGCACAGAGATTTGGCAGCTCGAAATGTGCTGCTGGTCAACCAACATTATGCCAAGATCAGCGACTTCGGCCTCTCCAAAGCGCTCGGCGCAGACGATAACTATTACAAGgCACGCACATTAGGCAAATGGCCTCTAAAATGGTACGCTCCAGAGTGCATCATGTACCACAAGTTCTCCAATAAAGGCGATGTGTGGAGCTTTGGGGTTACCATGTGGGAGGCGTTTTCCTATGGAGGAAAACCTTACAAGAAAATGAAGGGTCCCGAGGTGATCAGCTTCCTCCAGAACGGCAGTCGCATGGACAGTCCAGCTGGCTGCCCAGAGCCCATGTACGAGCTGATGAAAGAATGCTGGACATTCAAGTATGAAGACAGGCCAGGCTTCGTGAAAGTGGAGGAGAAGATGAGGACCTACTATTACTCCATTTCTAAGAAGAATGCCACTGAGGCAAATGGAGAGGCAGAGAAACCGGATAATTAGCAGCTCAGCTCTGaaagtttaatgtttttttttcaccaggaATTAGTAACAGCATGATGTGTTAAATCTTGTGTGTGAAAGAAGGCACAGAAATACAAAATCTACGCAGATTCGTCGCATTAGCCTGTTACAGGACTCGCTGTGCTTCAGAGCTCGAAATGTCCAAGCGAAAGCTTTGTGTTTATGAAATACATGAAGGCG

Function

NR:

description
PREDICTED: tyrosine-protein kinase ZAP-70

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0090050 positive regulation of cell migration involved in sprouting angiogenesis biological_process
GO:0006468 protein phosphorylation biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG:

id description
K07360 ZAP70; tyrosine-protein kinase ZAP-70

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928033.2 False 2221 mRNA 0.53 13 3634700 3658044
XM_026928034.2 True 2357 mRNA 0.52 14 3634700 3658044

Neighbor

gene id symbol gene type direction distance location
fcho1 fcho1,LOC108264992,LOC107751067,LOC103395380,LOC100695123 coding upstream 235273 3349812 ~ 3399427 (+)
foxd2 foxd1,LOC108265081,LOC103022344 coding upstream 536476 3089581 ~ 3098224 (+)
foxe3 LOC108265253 coding upstream 547519 3077120 ~ 3087181 (+)
slc35a3a slc35a3,LOC108439387,LOC100705874,LOC102790943,LOC101471768 coding upstream 579636 3036229 ~ 3055064 (+)
notch2 LOC108265554 coding upstream 602975 2951421 ~ 3031725 (+)
mob3a LOC108264984,LOC108439653,LOC100699828,LOC102783145,LOC107585875,LOC104921817,LOC103368804,LOC101067073,LOC107731185 coding downstream 1806 3659850 ~ 3671689 (+)
haus5 haus5 coding downstream 120253 3778297 ~ 3791621 (+)
dohh dohh,LOC106584359,LOC107745802 coding downstream 144612 3802656 ~ 3807484 (+)
smim24 NA coding downstream 160360 3818404 ~ 3821091 (+)
abtb1 abtb1,LOC107674366,LOC107696919 coding downstream 460991 4119035 ~ 4131370 (+)
G126408 NA non-coding upstream 3068 3629802 ~ 3631632 (+)
G126401 NA non-coding upstream 59397 3568989 ~ 3575303 (+)
G125626 NA non-coding upstream 407036 2993850 ~ 3227664 (+)
G125593 NA non-coding upstream 778925 2854757 ~ 2855775 (+)
G125525 NA non-coding upstream 892416 2741998 ~ 2742284 (+)
LOC117597831 NA non-coding downstream 61298 3719342 ~ 3735098 (+)
G126461 NA non-coding downstream 144500 3802544 ~ 3843737 (+)
LOC117597875 NA non-coding downstream 151212 3809256 ~ 3816185 (+)
G126453 NA non-coding downstream 175634 3833678 ~ 3838635 (+)
G126493 NA non-coding downstream 249035 3907079 ~ 3964096 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other upstream 97411 3445015 ~ 3537289 (+)
znf692 znf692 other upstream 286953 3336380 ~ 3347747 (+)
LOC113535041 edem3 other upstream 716469 2845709 ~ 2918231 (+)
alkal1 LOC108265007 other upstream 1402560 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 1647128 1877028 ~ 1987572 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 26849 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 92460 3750504 ~ 3777490 (+)
si:ch73-233m11.2 LOC108265197 other downstream 437225 4095269 ~ 4104819 (+)
ssuh2rs1 LOC108264961 other downstream 562606 4220650 ~ 4278077 (+)
plxnb3 plxnb3,LOC108265307,LOC107584917,LOC107601751 other downstream 968041 4626085 ~ 4727880 (+)

Expression


Co-expression Network