prrg1 (prrg1,LOC108265743)


Basic Information

Item Value
gene id prrg1
gene name prrg1,LOC108265743
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2337341 ~ 2347459 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928058.2
ttgggtgaactattcctttaatagcTAAACTACTGCAGGATAACagaccaatctggcaacctcattCTAACGTTATTGTCagttcaatctggcaacctttgTTTGTAGTCATGAGGGACGCGCTCTCTCTGcgcagtgcgcatgcgcggtTTCTTAGGCATCAGGGTGAAAAAACACACTGGGCGCAGTTTTGAAAGTGTAAGGGTTGCGGAGCTGCAGGAATCATGGGAACCGTGTTCCTGTCAGCGGACGAGGCGCACGCCGTGCTGCGGAGGCTCCCGCGGGCCAACTTCTTCCTGGAAGAGATGAAGCAGGGAAACATCCAGCGCGAGTGTAGGGAGGAGATCTGTAACTACGAGGAGGCCCGAGAGGCGTTCGAGAACGACGAGAAGACGCGGCGATTCTGGGAGGAATACCAGCGCGAGAGCAGCCCCAAACCCGGAGGACTTCAGTCCATAGTGGGCGGAGTCAACTCGCTGTACCTGGTCCTgcccctgctgctgctgctgctgctgctcatcGCCGCCGTCACGTTCACCGCGTGGAGGTGCCACTCGCGCAAAAGATCCCAGCGCAGCCCCGCCATCGCCCAGAGAGACTCCGCCCTCGCCGTCGTTTCCATGGACCAGTGGGGGCAAAGCTATCAGCCTGACCCCGCCTATTCTGGTGATGACATCACACCCGGGCAGGTCAGCGCCGCGGATCCGCCTCCGTCATACGAGGAAGCCGTGGGTCACATGGATGTGCACGTGGAGGCGGAGCCTCCGCCCCAGTACGATGACATTGTCAGAGGCCCTGCGAGCAacactgtgattggtcaggccAAGTGAAGCACGCCCAATCACAACGCGCCCTCACTCCTGAGGTTTACTCCACGCCAATCGCTGCTTCTGTTAGCGCTCTTTACAACGAGAGACTGCGTGCAACTCGCCAGTTCACTGCTGAAATAGACGttttaatacaattaatacCAGCAACCGCCAGAAATAAGAGCGCTAACACTCCGATCAAGTTCTAACAGCGAAGAAAATAGATTTGttttccaaaaaacaaaaaaatacctTATACTCAGTTTGCCACAGAATATATCACTCCGGAGTGTAAGATCCAACTTCTTACAATCTGCtcacagaaaaatatataaatgttgcATTAGCGCAAcgggcatttttattttatttttatacattgccATAATTACTAAATTCTAAAATTAGTCAATTTTATGCTAGTTCTTTTAGTGATTAagaatctcaaacacaaaccctGAAACCCATTTGAACGagtcttttaaagaaaaacgtCAGACGTATCGAGTCAAAATCATCCAAATGCAGAATAGAAATcttttttggtcaaaatatATTCGGTGCAAAGACTTTCCACTTTGCTCCCCTATGAAAATTTTCCCGTAACTACTGGAGTATTACGACTACTATTATAAagaaacactaataaacagGCAAAAATTGCATCTTATAGTCCAGGgaatgataatatattaaatcCGAATGCATCCTAACCAGCGAAGGAAACACAATGGTTTTGTTTATCAAGAATGAACTTGAGAAGTCGTGTGTCAGGCAGTAAATAAGAAGTGTAAATACAACAGCTCGTCcagttctgctgctgctgctgctgctgctgctgcgagTTATCCGAGTGAGCCGTCTCACTGTCATTTCTCATCAGGCTTCACTGCTGCTGGGCCTGAAACCCTGAAATCGAGCCAAACCTCAGCTCCCGGGTGCAAAAAGCCTGAGTCATAGGATCGAGAAAAGCCGAGGAAGCacacttttcttcttcatctacttcatcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
>XM_026928059.2
cctcctctctctctgtgtgtgtgtgtgtggtgtgtgtggtttttaaaGATGTCTGGTGATTAGGTGTTTAGGATGTAGCAAAACAAgtttataaaaattgtaaataacggcgtttttgttgatttgtttggtGCGCGAGACCGTGTCGCTCGCGCGGATGGATTAACGGTAAATCACTCAGTGTCAGTTAGCGGAGTTAGCGTAGCAACACGGAGCACATTAGCGGTTAAAATACGTGTAAGGGTTGCGGAGCTGCAGGAATCATGGGAACCGTGTTCCTGTCAGCGGACGAGGCGCACGCCGTGCTGCGGAGGCTCCCGCGGGCCAACTTCTTCCTGGAAGAGATGAAGCAGGGAAACATCCAGCGCGAGTGTAGGGAGGAGATCTGTAACTACGAGGAGGCCCGAGAGGCGTTCGAGAACGACGAGAAGACGCGGCGATTCTGGGAGGAATACCAGCGCGAGAGCAGCCCCAAACCCGGAGGACTTCAGTCCATAGTGGGCGGAGTCAACTCGCTGTACCTGGTCCTgcccctgctgctgctgctgctgctgctcatcGCCGCCGTCACGTTCACCGCGTGGAGGTGCCACTCGCGCAAAAGATCCCAGCGCAGCCCCGCCATCGCCCAGAGAGACTCCGCCCTCGCCGTCGTTTCCATGGACCAGTGGGGGCAAAGCTATCAGCCTGACCCCGCCTATTCTGGTGATGACATCACACCCGGGCAGGTCAGCGCCGCGGATCCGCCTCCGTCATACGAGGAAGCCGTGGGTCACATGGATGTGCACGTGGAGGCGGAGCCTCCGCCCCAGTACGATGACATTGTCAGAGGCCCTGCGAGCAacactgtgattggtcaggccAAGTGAAGCACGCCCAATCACAACGCGCCCTCACTCCTGAGGTTTACTCCACGCCAATCGCTGCTTCTGTTAGCGCTCTTTACAACGAGAGACTGCGTGCAACTCGCCAGTTCACTGCTGAAATAGACGttttaatacaattaatacCAGCAACCGCCAGAAATAAGAGCGCTAACACTCCGATCAAGTTCTAACAGCGAAGAAAATAGATTTGttttccaaaaaacaaaaaaatacctTATACTCAGTTTGCCACAGAATATATCACTCCGGAGTGTAAGATCCAACTTCTTACAATCTGCtcacagaaaaatatataaatgttgcATTAGCGCAAcgggcatttttattttatttttatacattgccATAATTACTAAATTCTAAAATTAGTCAATTTTATGCTAGTTCTTTTAGTGATTAagaatctcaaacacaaaccctGAAACCCATTTGAACGagtcttttaaagaaaaacgtCAGACGTATCGAGTCAAAATCATCCAAATGCAGAATAGAAATcttttttggtcaaaatatATTCGGTGCAAAGACTTTCCACTTTGCTCCCCTATGAAAATTTTCCCGTAACTACTGGAGTATTACGACTACTATTATAAagaaacactaataaacagGCAAAAATTGCATCTTATAGTCCAGGgaatgataatatattaaatcCGAATGCATCCTAACCAGCGAAGGAAACACAATGGTTTTGTTTATCAAGAATGAACTTGAGAAGTCGTGTGTCAGGCAGTAAATAAGAAGTGTAAATACAACAGCTCGTCcagttctgctgctgctgctgctgctgctgctgcgagTTATCCGAGTGAGCCGTCTCACTGTCATTTCTCATCAGGCTTCACTGCTGCTGGGCCTGAAACCCTGAAATCGAGCCAAACCTCAGCTCCCGGGTGCAAAAAGCCTGAGTCATAGGATCGAGAAAAGCCGAGGAAGCacacttttcttcttcatctacttcatcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc

Function

symbol description
prrg1 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human PRRG1 (proline rich and Gla domain 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928058.2 False 1869 mRNA 0.48 4 2337341 2347459
XM_026928059.2 True 1908 mRNA 0.48 4 2337544 2347459

Neighbor

gene id symbol gene type direction distance location
tab3 tab3 coding upstream 32558 2289451 ~ 2304783 (+)
LOC113535241 LOC108265201 coding upstream 460826 1853372 ~ 1876515 (+)
atp2b3a atp2b3a,LOC108265719,LOC107755305,LOC107758015,LOC107699155,LOC107603076 coding upstream 485791 1820191 ~ 1851550 (+)
dedd dedd,LOC108265722,LOC108411641,LOC106572035 coding upstream 526008 1809014 ~ 1811333 (+)
bgna LOC108265721,LOC107577956 coding upstream 534668 1789630 ~ 1802673 (+)
ccdc181 ccdc181 coding downstream 13495 2360954 ~ 2366245 (+)
fsd1 fsd1,LOC107750605,LOC107717569,LOC107657921,LOC107585848,LOC107700007 coding downstream 21880 2369339 ~ 2388945 (+)
mpnd mpnd,LOC106591182,LOC107750615 coding downstream 61866 2409325 ~ 2418955 (+)
LOC117597819 NA coding downstream 293252 2640711 ~ 2642606 (+)
ptgesl ptges2,LOC103370734,LOC104955211 coding downstream 347504 2694963 ~ 2704063 (+)
G125308 NA non-coding upstream 23400 2280212 ~ 2313941 (+)
G125344 NA non-coding upstream 33849 2302948 ~ 2303492 (+)
LOC117597827 NA non-coding upstream 50925 2284449 ~ 2286416 (+)
G125306 nexn non-coding upstream 71817 2261351 ~ 2265524 (+)
G125239 NA non-coding upstream 80555 2059317 ~ 2256786 (+)
G125334 NA non-coding downstream 1756 2349215 ~ 2351001 (+)
G125362 cpox non-coding downstream 9754 2357213 ~ 2358821 (+)
G125332 NA non-coding downstream 74099 2421558 ~ 2426331 (+)
G125337 sh3gl1,LOC108265290,LOC107750655,LOC107700047 non-coding downstream 84267 2431726 ~ 2432649 (+)
G125497 NA non-coding downstream 302230 2649689 ~ 2651252 (+)
alkal1 LOC108265007 other upstream 105201 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 349769 1877028 ~ 1987572 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 530551 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 990756 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 1135415 1155413 ~ 1201926 (+)
LOC113535041 edem3 other downstream 498250 2845709 ~ 2918231 (+)
znf692 znf692 other downstream 988921 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 1097556 3445015 ~ 3537289 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 1337434 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 1403045 3750504 ~ 3777490 (+)

Expression


Co-expression Network