atp5pb (atp5f1,LOC107668113,LOC107679218,LOC107711984,LOC107731279)


Basic Information

Item Value
gene id atp5pb
gene name atp5f1,LOC107668113,LOC107679218,LOC107711984,LOC107731279
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12249509 ~ 12257259 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928081.2
GACTTCTATAGCACCCTTGCTCGTTGGAGAAGGGCACAGCGAGGCCGAGGAGCGCCAGTGTCTGCAGTAGGATACATTTCGGCCTGGGTTCTTGCCCTTCCTTCCTTCAGATATGCTGTCCAGACTTGTGTTAGTTTCAGGTTCAGCCCTGAAAAACACTGGTTCCTTTGGACCCTGTGTGGTCCAGGCCTCTCGTTCCCTCCACTCGTCTCCTCAGAGCCTGGCACCTGTGCCCCCTCTGCCAGAGAAGGGAGGAAAAGTCCGCCATGGAATTTTCCCAGAAGAGCTCTTCACGCTGCTGTACCCAAAGACTGGTGTCACGgGACCTTACATGCTCGGCACTGGTCTGCTCCTGTACTTGCTCTCTAAGGAGATCTACGTCATCAACCATGAGACCATCGCTGCTGCCTCCATTGGTGCAGTGATCATTTATGGTGTCAAGAAGTTTGGTCCCCAAGTGGCAGCTTTTGCAGACAAATTGAACGAGGAGAAAGTGGCAAAGATCCAGGAGGTGAAAGATCAGGCCATGAGCAGCCTGGCTGGAGCTGTCGAGCAAGAAAAGAAGGAGCAGTGGAGAGTGGAAGGAAGGCAAATGCTTTTCGATGCCAAGAGGAACAACGTGGCCATGCTGCTGGAGACCAACTACAGGGAGCGGCTTCACATGGTCACCAATGAGGTGAAGAAGAGGCTCGATTATCAGGTGGCGCTTCAGAACCTGCAGCGCCGCATGGAGCAGGAGCACATGGTCAACTGGGTGGAGCAGAACGTCATAAAGAGCATCACACCACAACAGGAAAAGGAGAGTATTGCTAAGTGCATCTCAGATCTGAAAGTACTGGCTAAGGCCACTCAGGCCAAAGCCACAGCATAGTTTCTGTTGATGAGCCTCTCCCATCCATAATCAAGCCACCCGCTTTTCTTTATAAGTAAACTATGTCCTCGTAAAGATGGTCTGATTGTGTCCTTTAAGTGTACATACACATTGAATAAAGTATTTGATTATTCACTAA

Function

symbol description
atp5f1 F-type H+-transporting ATPase subunit b

NR:

description
PREDICTED: ATP synthase F(0) complex subunit B1, mitochondrial

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function

KEGG:

id description
K02127 ATPeF0B, ATP5F1, ATP4; F-type H+-transporting ATPase subunit b

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928081.2 True 1010 mRNA 0.51 7 12249509 12257259

Neighbor

gene id symbol gene type direction distance location
prex1 prex1,LOC107731191,LOC107591805,LOC107679267,LOC107550458 coding upstream 61880 12103220 ~ 12187629 (+)
stk38a stk38,LOC108265501 coding upstream 152770 12076511 ~ 12096739 (+)
sema3ga sema3ga,LOC108265594,LOC108442245,LOC107591802,LOC107550503,LOC107731285,LOC107669661 coding upstream 216017 12010073 ~ 12033492 (+)
tspy LOC108265788 coding upstream 248739 11996043 ~ 12000770 (+)
suv39h1b suv39h1,suv39h1b,LOC108265881,LOC108442234,LOC107550505,LOC107679310,LOC107591797 coding upstream 292106 11947451 ~ 11957403 (+)
eps8l3b LOC108265744 coding downstream 317 12257576 ~ 12274064 (+)
gnat2 gnat2,LOC108265815,LOC108442114,LOC102236489,LOC108236782,LOC107390790,LOC107591823,LOC103467179,LOC107679180,LOC106946560,LOC107731158,LOC107668040,LOC107550493 coding downstream 57645 12314904 ~ 12322876 (+)
trnad-guc_1 NA coding downstream 124740 12381999 ~ 12382070 (+)
amigo1 amigo1 coding downstream 132996 12390255 ~ 12396660 (+)
sort1b LOC108265432,LOC108442120 coding downstream 156935 12414194 ~ 12433146 (+)
G131282 NA non-coding upstream 23147 12226152 ~ 12226362 (+)
G131279 NA non-coding upstream 32295 12217004 ~ 12217214 (+)
G131061 NA non-coding upstream 531624 11716832 ~ 11717885 (+)
G130960 NA non-coding upstream 697478 11548962 ~ 11552031 (+)
LOC117597850 NA non-coding upstream 890129 11355449 ~ 11359380 (+)
LOC117597859 NA non-coding downstream 262635 12519894 ~ 12533258 (+)
G131606 NA non-coding downstream 432908 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding downstream 443453 12700712 ~ 12701501 (+)
G131605 NA non-coding downstream 455366 12712625 ~ 12729522 (+)
LOC117597782 NA non-coding downstream 551864 12809123 ~ 12809738 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 19508 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 253657 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 535477 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 552718 11677511 ~ 11696791 (+)
LOC113530800 LOC108266038 other upstream 615665 11622302 ~ 11633844 (+)
rbm15 rbm15,LOC107731203 other downstream 342439 12599698 ~ 12604705 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1447907 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 1633145 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 1692678 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 2064913 14322172 ~ 14323450 (+)

Expression


Co-expression Network