LOC113535040


Basic Information

Item Value
gene id LOC113535040
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2906725 ~ 2910360 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928126.2
tctttctctctacctctccctctctcaatTCCATCCCACAGGAGTAAACATTCCGCAGACTGAGAAATTCCTGTGTTTGAGATTAAGTGCAAGTATTTGGAAAAACATAGAAACTTTCATTTCCAATCATTTCCAAACATCACGGCAAGTCAAAACTGTTTTTGGATgagtgggtgagagagagagagagagagagagagagagagagagaaagagaaagagagagaaaaacagtatCTGGAAAGGTGGAGTTTGAgctgcaggaacacacacagagttttcttctcattttcagGTCCAATAGTCAGTTTTAGAGTAAAACTCGGTGTAAATTGCTCTGTAAGCTCAGTTTTAGTGATCGTGTTGTGGCCGCACTATGGTCTCGAGCGTTTTGTGGATCTGGGCTCGGATGCTGGCGCTTATGTGCCTCCTGGTGCCAGGCTCTGGGTATCTGTTGCTGCGTGAAGGAGAAAAATGTGGAGGCTGGGTCGAGGGCGGGTGCGAGTCCAGTCTCCTCTGTCAGTCTGATGAACCCTCATCCGATTTCTTCTACGCTGAAGGAGTGTGCACCAGGCCTGTAGGTTGTAACTGCTCCGAGGTCCAGTGTCCACCACAGCGCCGTGGTGGCTGTCGCAGCCGTCCAGCGAGCGATCCGTGTGGGTGTTGTTCCCACTGCCCCAAGACGAAGGGGCAGGTGTGCGGTGGGCCGAGCTGGAGATATGGTTACTGTGATTCGGATTTGGTTTGCGCTCTTGTTGTGGGGCTTGATTCGGTCAGACCTCCACAGATAGGCGTGTGCAAAgcggtTCCAAGTCATTTCAAAGACACCTTCTCCAGACCTCTATGTCCTGTTTGGTATGGTTGCAACGTGCATGTTGGAAATTGTGACTGCTATTCACAGCAGTCCTGTTTTCCAGCGTTCTCATATAGCACCTACGACGCCTGCAATAAAGTTCTAATGGAATTCTTGACGTATGACGTTTATGACAGCGACGCAAAAAAGCCTCCCAAACCAGAGAAACCTGCACATGTGTGTATGGAGTGGGGTTGTGAGGTTCAGgactgcgagtgtgtgtgtcagcagagAAAGTGCAACGACAGGATACCTCTGTACGAGGAAGCCTGCTGCAACATGCTGAaggaaTCTGGGTGCTGTAATGCGTCCTGTCCTGAGATTCCCACTCCACCGTGTCCGGAAGACTCCTTCATTAGTGAGCCTCACACTGATCCCGGTCAGTGCTGCCCTGTTGTACCTGCTATGTGCACCTGCAACTTCCAGACCTGCGCTCCAAAACCCACATACTGCCCCAACCGTGGACTTCCCAAACTTGTCGTAAAGGGCAACGGACACCCAGGGACCTGCTGCGACCTTTACGAGTGTGTGAAAGAAGGAGATTAATTAGGATTAACACTCACAGGCCCGAACCCTTGATCTCTTTTGTTTCAAACCTTtaacctctttttctttttctcattcaaACATGAATAGCTTTGtatttgtctaaaaaaaatctcatttgagTAAGTACAAACAAGAATtgtatataatattgtataaattTGATGAAAACATTGGAAAAGTGCACCGCATCATCCGAGACTGGGACTGAAACCTTCTGCATTAATGATTTACAGCAAATCTCTGGTTCTGTTTACCTTTAACTGACCTCATCATCTACTTAATTGTTGTGAAGAATTGTTCAGTCATTAAATCTTCAATGGTTACTGTAGGAGACAGATGTCTTATTATAGCATATGTACTCTAGTTAAATCATTTATCCCAAtgtattaaacaaaacattttatacaattcaataaaaaagtaaaatgcatTGCTCAGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928126.2 True 1843 mRNA 0.46 5 2906725 2910360

Neighbor

gene id symbol gene type direction distance location
npl npl coding upstream 179 2897299 ~ 2906546 (+)
ptgesl ptges2,LOC103370734,LOC104955211 coding upstream 202662 2694963 ~ 2704063 (+)
LOC117597819 NA coding upstream 264119 2640711 ~ 2642606 (+)
mpnd mpnd,LOC106591182,LOC107750615 coding upstream 487770 2409325 ~ 2418955 (+)
fsd1 fsd1,LOC107750605,LOC107717569,LOC107657921,LOC107585848,LOC107700007 coding upstream 517780 2369339 ~ 2388945 (+)
sec22bb sec22b,sec22bb,LOC108265393,LOC101168279,LOC100705437,LOC103354218,LOC108439390 coding downstream 10506 2920866 ~ 2926332 (+)
notch2 LOC108265554 coding downstream 41061 2951421 ~ 3031725 (+)
slc35a3a slc35a3,LOC108439387,LOC100705874,LOC102790943,LOC101471768 coding downstream 125869 3036229 ~ 3055064 (+)
foxe3 LOC108265253 coding downstream 166760 3077120 ~ 3087181 (+)
foxd2 foxd1,LOC108265081,LOC103022344 coding downstream 179221 3089581 ~ 3098224 (+)
G125593 NA non-coding upstream 50950 2854757 ~ 2855775 (+)
G125484 rgl1,LOC107717560 non-coding upstream 161162 2705841 ~ 2745563 (+)
G125626 NA non-coding downstream 83490 2993850 ~ 3227664 (+)
G126401 NA non-coding downstream 658629 3568989 ~ 3575303 (+)
G126408 NA non-coding downstream 719442 3629802 ~ 3631632 (+)
LOC117597831 NA non-coding downstream 808982 3719342 ~ 3735098 (+)
G126461 NA non-coding downstream 892184 3802544 ~ 3843737 (+)
alkal1 LOC108265007 other upstream 674585 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 919153 1877028 ~ 1987572 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 1099935 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 1560140 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 1704799 1155413 ~ 1201926 (+)
znf692 znf692 other downstream 426020 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 534655 3445015 ~ 3537289 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 774533 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 840144 3750504 ~ 3777490 (+)
si:ch73-233m11.2 LOC108265197 other downstream 1184909 4095269 ~ 4104819 (+)

Expression


Co-expression Network