npl (npl)


Basic Information

Item Value
gene id npl
gene name npl
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2897299 ~ 2906546 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928129.2
CATGATCCTTCAGGAGACACGTGACTGTCTCATGCCTCATTGTCAGCTGCATTGTGGTGGACAAAACAGGTAGATGGAGTTCAGTGTTGTCTTCAGCTGCAGGAAGAGTCAGAGGGAGTCGAGTGACAGgtgcaGAGATGTGTCCAGAGTCGGAGAAGCTCACTGGTCTGATCGCAGCTACGTTCACGCCGCTCACTCCACAAGGTGAGCTGAACTTGGCGGTGATCGGACAGTACGTCGACTACCTGCTGGAGAAACAGAGCGTGCGCAGTGTGTTCGTGAACGGGACGACGGGTGAAGGCTGCTCTCTGACCCTGCAGGAACGGAAGCAGCTGGCGGAGGAATGGTGCCGTCAGGGCAAAGGGAAactcGACCAGGTCATCGTTCACGTCGGCTGCCTGAGCGTAAAAGACTCTCAGGAACTGGCACGTCACGCCGCGTCAGTAGGAGCTGATGCCATCGCTgtcatctctccatctttcttcaAACCCAGTAATGCAGAGGCGTTACAGATGTTTCTGAAGGAAGTGGGTTCAGTGGCTCCACAGCTTCCTTTCTACTATTATCACTTACCCAGCATGACGGGAGTGAAGCTGGACGTGAGGGAGGTTCTGGAAGGCATTGAGAAGAAGATTCCCTCGTTCCGAGGGCTGAAGTTCAGCGGAGTGGATTTAAGAGATCTGGGACAGTGCATCAGTTACTGCCGTCCTCGTGGCTGGTCCATCCTCTACGGAGTGGACgagCATCTGCTGGGAGCCTTGGCACTGGGAGTCAACGGTGCCGTGGGAAgtACGTACAATTACGTGGGTTACTTCATGAACAGGATGCTGAGTGCGTTTGAAAAAGGAGacctctctctcgctcagcACCTCCAGtttaaGTTGCAGGACGTCATCACATTCTCAAACAGTCTAGGCTTCGACTTGGCCATGAATAAGCAGCTGATGAGTTTGTGTTCCGGCCTGCCGATGGGTCCTCCGAGGCTGCCGCTGCTTCCGTGGCCTTCTGATCGCGTTCAGGAGATCGTTAAGAAACTCCAGCAGGACATGGAGGTCTGTcctaaataaaacaacagcacTTTGATAAATCAGCCGTCCCGGATACGTGCAGGTCGTTGGGGTACCACACGTTTGAAGAAGCCACGGCGTGCTTATGAGACATAAGCTCTGATTAGCTTGTGCTAAATGAATCGGTAATCTAGCTTTTAAATCAATACTTCGGTGAAAGAGACTAATATAGCCAGTAACACAGGAATCCATTTATATGGATGTAGTTTTATGTACCACTCCTGTAACTTGATCtctttaataattcataatatctACAAAAAAGAGGCCTCATGAAAGCTGAGACGGGTTTCTTTCGTAAACACTGATGgggaaaaacagaaaggaagaaatCGATGGTGTATAAAATCCACAGTTTAGTAGCAGTGTGGATTTTATACAACAGAGATTTATTCCTTTCTTGTTTGAAGGGATTGTTGTTTTTCCACATGCATTTCATGCAGATCTAAAATGTAAACTAATTTACCGTATATACTACTTTATACTACTTAATCGTttatgaaataatgaaacacaTCTGTTTTCTGAGCTTTTACCAAGAATCAGCTTGAGTTTAATACGTACAGTTTGTTAACCGCTAAAACGTCTCgggttttaattcatttgtagAGCTCCAGCTCCATACGTCAACATTGAGAGagtactttttttaatataacatctagtgttttttgttttgttttgttttatttactcgAACTTGTAGGTTTGTAGATTAGGGATGTGTCTTCTGTCTAATTTTCTTATTCAGATATTCAGATAAGTCTTGAATGAATGGATTTTCACGGTTAAACACTATTAGagggagaggggaaaaaaatatcagttaaaTGGTtattctgtttgtgtttgactGACGAAATAGAGAGAAATAATGTTTTACAGAAACGCACAGCAGCAAAAGTGTATTTCAGCTTGGTGATTCAGCCTGTAGTCCTGCTGTAACAtctaaaattcaaattcagacTGACTTTATATGATTACAGAGTTAATGAAGTACAGATGTTTCcatgttatatttactaaaccagtGAATTAAAAttgagaaatgaaatgaaatgaataatatgaTCAAACACTCATATTAGCAAGTCAGTCATGTTGCTTGTGTAATTATATCTGCTTACAGAGGTTTGAAAAATGTAagtcttttcattgttttttattttattttattgaaagtCTTTATATGTGTTTTTGAAAGCACAGTATCTGAAAAATCTCTAGCATGAACTCAGCAGTAAATCTGATTAACCTTTTGTGTCAGTTATGTAAGCTGTGAAGCTAGTTCTCGGAAATGTCTTTGGAAATGTACTCGTACTGTATTTTCTGAGGagcatttaaaaacattgatATCAAAATGATTTAGAGATGGAAAAGCATTAAAcagacattaaaacatttttaaaaatctca

Function

symbol description
npl Predicted to enable N-acetylneuraminate lyase activity. Acts upstream of or within N-acetylneuraminate catabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including fin bud; gut; muscle; vein; and yolk syncytial layer. Used to study myopathy. Orthologous to human NPL (N-acetylneuraminate pyruvate lyase).

NR:

description
N-acetylneuraminate lyase

GO:

id name namespace
GO:0019262 N-acetylneuraminate catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0008747 N-acetylneuraminate lyase activity molecular_function

KEGG:

id description
K01639 E4.1.3.3, nanA, NPL; N-acetylneuraminate lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928129.2 True 2483 mRNA 0.42 12 2897299 2906546

Neighbor

gene id symbol gene type direction distance location
ptgesl ptges2,LOC103370734,LOC104955211 coding upstream 193236 2694963 ~ 2704063 (+)
LOC117597819 NA coding upstream 254693 2640711 ~ 2642606 (+)
mpnd mpnd,LOC106591182,LOC107750615 coding upstream 478344 2409325 ~ 2418955 (+)
fsd1 fsd1,LOC107750605,LOC107717569,LOC107657921,LOC107585848,LOC107700007 coding upstream 508354 2369339 ~ 2388945 (+)
ccdc181 ccdc181 coding upstream 531054 2360954 ~ 2366245 (+)
LOC113535040 NA coding downstream 179 2906725 ~ 2910360 (+)
sec22bb sec22b,sec22bb,LOC108265393,LOC101168279,LOC100705437,LOC103354218,LOC108439390 coding downstream 14320 2920866 ~ 2926332 (+)
notch2 LOC108265554 coding downstream 44875 2951421 ~ 3031725 (+)
slc35a3a slc35a3,LOC108439387,LOC100705874,LOC102790943,LOC101471768 coding downstream 129683 3036229 ~ 3055064 (+)
foxe3 LOC108265253 coding downstream 170574 3077120 ~ 3087181 (+)
G125593 NA non-coding upstream 41524 2854757 ~ 2855775 (+)
G125484 rgl1,LOC107717560 non-coding upstream 151736 2705841 ~ 2745563 (+)
G125525 NA non-coding upstream 155015 2741998 ~ 2742284 (+)
G125509 LOC108265600 non-coding upstream 175417 2719032 ~ 2721882 (+)
G125482 NA non-coding upstream 187640 2707964 ~ 2709659 (+)
G125626 NA non-coding downstream 87304 2993850 ~ 3227664 (+)
G126401 NA non-coding downstream 662443 3568989 ~ 3575303 (+)
G126408 NA non-coding downstream 723256 3629802 ~ 3631632 (+)
LOC117597831 NA non-coding downstream 812796 3719342 ~ 3735098 (+)
G126461 NA non-coding downstream 895998 3802544 ~ 3843737 (+)
alkal1 LOC108265007 other upstream 665159 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 909727 1877028 ~ 1987572 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 1090509 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 1550714 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 1695373 1155413 ~ 1201926 (+)
znf692 znf692 other downstream 429834 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 538469 3445015 ~ 3537289 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 778347 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 843958 3750504 ~ 3777490 (+)
si:ch73-233m11.2 LOC108265197 other downstream 1188723 4095269 ~ 4104819 (+)

Expression


Co-expression Network