slc6a6a (slc6a6a,LOC108264963,LOC108441104,LOC107696920,LOC107552205,LOC107714566)


Basic Information

Item Value
gene id slc6a6a
gene name slc6a6a,LOC108264963,LOC108441104,LOC107696920,LOC107552205,LOC107714566
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 4153037 ~ 4177850 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928206.2
ACTCCTGTTGCATGGAGAGTCTGGTGTTTTTCCACTCACTCCGATATTACCCATATAAGACACGAAGGtcggcgagagagagagggcgtgAAGATTATTTGTAGTTGCCTCGCCGATCGCGCGCGCAGACaaacccactctctctctctctcacacacacaccgcacaaaGAAACGGCAGGACGagaagagactgagagactgagcaATAAATCCGGGGCACAGGATTATGATGTCCTTCCTCTGAGCTGAACTTCAGCCTGGTTTTGACTCTGGTAAACTCACAGAAGCCTTGTGTTTTCCTGCCTTGGATTAACCATTGCCTGCTCCAGCCGTGTCGTTTTACCCTCGCTCTCACAGTATAAACCAGTCCAATATGTCGATCATCAGCCACCATCAGGCCGCCATGGCTGAtATGGCACAGAAAGAGAAGCTGCAGTGTCTGAAGGATTTCCATAAGGACACGCTAAAGCCATCTCCGGGTAAAAGTCCAGGCACGCGTCCAGAGGACGAAGCAGAGGGAAAACCTCCACAGAGGGAGAAATGGGCCAGCAAACTGGACTTCCTGCTCTCTGTAGCCGGCGGCTTTGTTGGATTGGGGAACGTCTGGCGTTTCCCGTACCTCTGCTACAAGAATGGTGGAGgtgCATTTCTCATCCCATATTTCATCTTCCTGTTTGGTGGAGGACTTCCCGTGTTCTTCCTGGAGGTGGCGCTGGGCCAGTTCACCTCTGAAGGAGGGATCACCTGCTGGGAGAAACTCTGCCCCATCTTCactggtatTGGCTACGCATCCATTGTGATTGTGTCCCTGCTGAACATCTACTACATCGTGATCCTGGCTTGGGGTTTGTATTACCTGCTGCAGTGTTTGCAGAGAGAGCTGCCGTGGGCGCGCTGTCGCCACAGCTGGAACACCCCCAACTGTGTGGAAGACACCATCCGCAAGAACCAAACCCTCTGGCTCTCAGCCAATGTCACCAACTTCACCTCACCCGTGACTGAGTTCTGGGAGCGTAATGTGCTAAGTTTGTCATCGGGGATTGATGAGGTGGGTGAGCTGAAGTGGGATCTTGCCCTCTGTCTGCTCGCCGTCTGGGTCATCTGCTTCTTCTGCATTTGGAAAGGAGTGAAATCCACTGGCAAAGTGGTGTATTTCACTGCTACCTTTCCATTCCTCATGCTCATCGTGTTGTTGGTGCGAGGAGTGACTCTGCCCGGTGCTGCCGAGGGCATCAAGTTCTACCTGTACCCCGATCTGAGCCGCCTCCAAGACCCTGAGGTGTGGATCGATGCAGGGACACAGATCTTTTTCTCTTATGCTATTTGTCTTGGTGCAATGACTTCTCTAGGAagctataataaatataaatataattgctATAGggactGCTTGTTGCTGGGATGCCTGAACAGCGGGACCAGCTTTGTGTCTGGGTTTGCCATCTTCTCCGTCCTGGGTTTCATGGCACAGGAGCAGGGTGTGGCCATCGCCGACGTAGCTGAGTCAGGTCCCGGCCTGGCCTTCATCGCGTATCCAAAGGCAGTCACTATGATGCCACTGCCCACTTTTTGGGCTATACTCTTCTTCATCATGCTTCTGCTACTGGGCCTAGACAGTCAGtttGTAGAAGTGGAGGGTCAGATCACCTCCCTGGTGGACCTGTACCCATCCCTCCTAAGGAAGGGATACCGGAGAGAGATCTTCATCGCTGTCATCTGTGTCATCAGTTACCTGGTGGGACTCACCATGGTCACTAATGGTGGCATGTATGTGTTCCAGCTGTTTGATTACTATGCAGCCAGCGGTGTGTGCCTTCTCTGGGTTGCATTCTTTGAATGTGTGGCAGTAGCCTGGGTTTATGgcgCTGATAATTTCTACGATGCTATTGAGGAGATGATTGGCTACAGACCGAACGGTTGGATGAAATGGAGCTGGATGTTGATCACTCCTGTGCTGTGTGTGggctgttttgtgttttctctggtGAAATACAAACCCCTCACTTATAACAAAGTGTACGAGTATCCCGATTGGTCCATCGGAGTGGGCTGGTGTCTGGCTTTGGCCTCGATGATCTGCATCCCCATGGTGGTGGTCGTCAAAATCATCCAATCGGATGGTTCACTGATTGAGcgGATCAAGGCCGTGGCAGCGCCGGTGAAAGGAGCGAGCTCTCGTCCGAAAGAGTGCGTCCTGAAGAACAGCGAGCTGCTCCACCCGCTCGACCCTAATGGCACTTACGCCCTctccaaacacactcacaccatcGTAGAAACTACAATGTGAGACTCTCTATGAGAGAACCGTGTTCCCTTTTCTCCTCTTTTaaaactctttttctctcctttagTCTGATCAGACTGCTTCATAGTGTGTTCTAGTTGTATTTTTACAcaaggaggtaaaaaaaaaaaaccttccttaTAATATCTTTTGCTGTTTAGgaattttattatcattattattattattgtggtaTTATTCTTGTTGTTATTATGATATCACTGTAATCATTGCTAGTAATGCTAAGATTTGTTGAGGTTGAAGCTGTGAGAGACACCTTGTCTTCTTCACACGAGCAAAGAGAGACGGATAGGAACTGTGAAAGTTGTTTAGAAGGATGTtgagccttgttttttttttttaaagaaaaatgacaaatacaGCAGTGAAGTaaacgtgattttttttaaaagatagcTGCACTAATCAGCAGGTGTGTAGGTGACAGTTTGTGGCAGTGATCCTTATTGTACAGTGAGGTTTCCTGTACAGCGTTCTTCGTCTTGATGAAGCTGAAT
>XM_026928207.2
CACTCCTGTTGCATGGAGAGTCTGGTGTTTTTCCACTCACTCCGATATTACCCATATAAGACACGAAGGtcggcgagagagagagggcgtgAAGATTATTTGTAGTTGCCTCGCCGATCGCGCGCGCAGACaaacccactctctctctctctcacacacacaccgcacaaaGAAACGGCAGGACGagaagagactgagagactgagcaATAAATCCGGGGCACAGCCTGGTTTTGACTCTGGTAAACTCACAGAAGCCTTGTGTTTTCCTGCCTTGGATTAACCATTGCCTGCTCCAGCCGTGTCGTTTTACCCTCGCTCTCACAGTATAAACCAGTCCAATATGTCGATCATCAGCCACCATCAGGCCGCCATGGCTGAtATGGCACAGAAAGAGAAGCTGCAGTGTCTGAAGGATTTCCATAAGGACACGCTAAAGCCATCTCCGGGTAAAAGTCCAGGCACGCGTCCAGAGGACGAAGCAGAGGGAAAACCTCCACAGAGGGAGAAATGGGCCAGCAAACTGGACTTCCTGCTCTCTGTAGCCGGCGGCTTTGTTGGATTGGGGAACGTCTGGCGTTTCCCGTACCTCTGCTACAAGAATGGTGGAGgtgCATTTCTCATCCCATATTTCATCTTCCTGTTTGGTGGAGGACTTCCCGTGTTCTTCCTGGAGGTGGCGCTGGGCCAGTTCACCTCTGAAGGAGGGATCACCTGCTGGGAGAAACTCTGCCCCATCTTCactggtatTGGCTACGCATCCATTGTGATTGTGTCCCTGCTGAACATCTACTACATCGTGATCCTGGCTTGGGGTTTGTATTACCTGCTGCAGTGTTTGCAGAGAGAGCTGCCGTGGGCGCGCTGTCGCCACAGCTGGAACACCCCCAACTGTGTGGAAGACACCATCCGCAAGAACCAAACCCTCTGGCTCTCAGCCAATGTCACCAACTTCACCTCACCCGTGACTGAGTTCTGGGAGCGTAATGTGCTAAGTTTGTCATCGGGGATTGATGAGGTGGGTGAGCTGAAGTGGGATCTTGCCCTCTGTCTGCTCGCCGTCTGGGTCATCTGCTTCTTCTGCATTTGGAAAGGAGTGAAATCCACTGGCAAAGTGGTGTATTTCACTGCTACCTTTCCATTCCTCATGCTCATCGTGTTGTTGGTGCGAGGAGTGACTCTGCCCGGTGCTGCCGAGGGCATCAAGTTCTACCTGTACCCCGATCTGAGCCGCCTCCAAGACCCTGAGGTGTGGATCGATGCAGGGACACAGATCTTTTTCTCTTATGCTATTTGTCTTGGTGCAATGACTTCTCTAGGAagctataataaatataaatataattgctATAGggactGCTTGTTGCTGGGATGCCTGAACAGCGGGACCAGCTTTGTGTCTGGGTTTGCCATCTTCTCCGTCCTGGGTTTCATGGCACAGGAGCAGGGTGTGGCCATCGCCGACGTAGCTGAGTCAGGTCCCGGCCTGGCCTTCATCGCGTATCCAAAGGCAGTCACTATGATGCCACTGCCCACTTTTTGGGCTATACTCTTCTTCATCATGCTTCTGCTACTGGGCCTAGACAGTCAGtttGTAGAAGTGGAGGGTCAGATCACCTCCCTGGTGGACCTGTACCCATCCCTCCTAAGGAAGGGATACCGGAGAGAGATCTTCATCGCTGTCATCTGTGTCATCAGTTACCTGGTGGGACTCACCATGGTCACTAATGGTGGCATGTATGTGTTCCAGCTGTTTGATTACTATGCAGCCAGCGGTGTGTGCCTTCTCTGGGTTGCATTCTTTGAATGTGTGGCAGTAGCCTGGGTTTATGgcgCTGATAATTTCTACGATGCTATTGAGGAGATGATTGGCTACAGACCGAACGGTTGGATGAAATGGAGCTGGATGTTGATCACTCCTGTGCTGTGTGTGggctgttttgtgttttctctggtGAAATACAAACCCCTCACTTATAACAAAGTGTACGAGTATCCCGATTGGTCCATCGGAGTGGGCTGGTGTCTGGCTTTGGCCTCGATGATCTGCATCCCCATGGTGGTGGTCGTCAAAATCATCCAATCGGATGGTTCACTGATTGAGcgGATCAAGGCCGTGGCAGCGCCGGTGAAAGGAGCGAGCTCTCGTCCGAAAGAGTGCGTCCTGAAGAACAGCGAGCTGCTCCACCCGCTCGACCCTAATGGCACTTACGCCCTctccaaacacactcacaccatcGTAGAAACTACAATGTGAGACTCTCTATGAGAGAACCGTGTTCCCTTTTCTCCTCTTTTaaaactctttttctctcctttagTCTGATCAGACTGCTTCATAGTGTGTTCTAGTTGTATTTTTACAcaaggaggtaaaaaaaaaaaaccttccttaTAATATCTTTTGCTGTTTAGgaattttattatcattattattattattgtggtaTTATTCTTGTTGTTATTATGATATCACTGTAATCATTGCTAGTAATGCTAAGATTTGTTGAGGTTGAAGCTGTGAGAGACACCTTGTCTTCTTCACACGAGCAAAGAGAGACGGATAGGAACTGTGAAAGTTGTTTAGAAGGATGTtgagccttgttttttttttttaaagaaaaatgacaaatacaGCAGTGAAGTaaacgtgattttttttaaaagatagcTGCACTAATCAGCAGGTGTGTAGGTGACAGTTTGTGGCAGTGATCCTTATTGTACAGTGAGGTTTCCTGTACAGCGTTCTTCGTCTTGATGAAGCTGAAT
>XM_026928208.2
TCCTGTTGCATGGAGAGTCTGGTGTTTTTCCACTCACTCCGATATTACCCATATAAGACACGAAGGtcggcgagagagagagggcgtgAAGATTATTTGTAGTTGCCTCGCCGATCGCGCGCGCAGACaaacccactctctctctctctcacacacacaccgcacaaaGAAACGGCAGGACGagaagagactgagagactgagcaATAAATCCGGGGCACAGtATGGCACAGAAAGAGAAGCTGCAGTGTCTGAAGGATTTCCATAAGGACACGCTAAAGCCATCTCCGGGTAAAAGTCCAGGCACGCGTCCAGAGGACGAAGCAGAGGGAAAACCTCCACAGAGGGAGAAATGGGCCAGCAAACTGGACTTCCTGCTCTCTGTAGCCGGCGGCTTTGTTGGATTGGGGAACGTCTGGCGTTTCCCGTACCTCTGCTACAAGAATGGTGGAGgtgCATTTCTCATCCCATATTTCATCTTCCTGTTTGGTGGAGGACTTCCCGTGTTCTTCCTGGAGGTGGCGCTGGGCCAGTTCACCTCTGAAGGAGGGATCACCTGCTGGGAGAAACTCTGCCCCATCTTCactggtatTGGCTACGCATCCATTGTGATTGTGTCCCTGCTGAACATCTACTACATCGTGATCCTGGCTTGGGGTTTGTATTACCTGCTGCAGTGTTTGCAGAGAGAGCTGCCGTGGGCGCGCTGTCGCCACAGCTGGAACACCCCCAACTGTGTGGAAGACACCATCCGCAAGAACCAAACCCTCTGGCTCTCAGCCAATGTCACCAACTTCACCTCACCCGTGACTGAGTTCTGGGAGCGTAATGTGCTAAGTTTGTCATCGGGGATTGATGAGGTGGGTGAGCTGAAGTGGGATCTTGCCCTCTGTCTGCTCGCCGTCTGGGTCATCTGCTTCTTCTGCATTTGGAAAGGAGTGAAATCCACTGGCAAAGTGGTGTATTTCACTGCTACCTTTCCATTCCTCATGCTCATCGTGTTGTTGGTGCGAGGAGTGACTCTGCCCGGTGCTGCCGAGGGCATCAAGTTCTACCTGTACCCCGATCTGAGCCGCCTCCAAGACCCTGAGGTGTGGATCGATGCAGGGACACAGATCTTTTTCTCTTATGCTATTTGTCTTGGTGCAATGACTTCTCTAGGAagctataataaatataaatataattgctATAGggactGCTTGTTGCTGGGATGCCTGAACAGCGGGACCAGCTTTGTGTCTGGGTTTGCCATCTTCTCCGTCCTGGGTTTCATGGCACAGGAGCAGGGTGTGGCCATCGCCGACGTAGCTGAGTCAGGTCCCGGCCTGGCCTTCATCGCGTATCCAAAGGCAGTCACTATGATGCCACTGCCCACTTTTTGGGCTATACTCTTCTTCATCATGCTTCTGCTACTGGGCCTAGACAGTCAGtttGTAGAAGTGGAGGGTCAGATCACCTCCCTGGTGGACCTGTACCCATCCCTCCTAAGGAAGGGATACCGGAGAGAGATCTTCATCGCTGTCATCTGTGTCATCAGTTACCTGGTGGGACTCACCATGGTCACTAATGGTGGCATGTATGTGTTCCAGCTGTTTGATTACTATGCAGCCAGCGGTGTGTGCCTTCTCTGGGTTGCATTCTTTGAATGTGTGGCAGTAGCCTGGGTTTATGgcgCTGATAATTTCTACGATGCTATTGAGGAGATGATTGGCTACAGACCGAACGGTTGGATGAAATGGAGCTGGATGTTGATCACTCCTGTGCTGTGTGTGggctgttttgtgttttctctggtGAAATACAAACCCCTCACTTATAACAAAGTGTACGAGTATCCCGATTGGTCCATCGGAGTGGGCTGGTGTCTGGCTTTGGCCTCGATGATCTGCATCCCCATGGTGGTGGTCGTCAAAATCATCCAATCGGATGGTTCACTGATTGAGcgGATCAAGGCCGTGGCAGCGCCGGTGAAAGGAGCGAGCTCTCGTCCGAAAGAGTGCGTCCTGAAGAACAGCGAGCTGCTCCACCCGCTCGACCCTAATGGCACTTACGCCCTctccaaacacactcacaccatcGTAGAAACTACAATGTGAGACTCTCTATGAGAGAACCGTGTTCCCTTTTCTCCTCTTTTaaaactctttttctctcctttagTCTGATCAGACTGCTTCATAGTGTGTTCTAGTTGTATTTTTACAcaaggaggtaaaaaaaaaaaaccttccttaTAATATCTTTTGCTGTTTAGgaattttattatcattattattattattgtggtaTTATTCTTGTTGTTATTATGATATCACTGTAATCATTGCTAGTAATGCTAAGATTTGTTGAGGTTGAAGCTGTGAGAGACACCTTGTCTTCTTCACACGAGCAAAGAGAGACGGATAGGAACTGTGAAAGTTGTTTAGAAGGATGTtgagccttgttttttttttttaaagaaaaatgacaaatacaGCAGTGAAGTaaacgtgattttttttaaaagatagcTGCACTAATCAGCAGGTGTGTAGGTGACAGTTTGTGGCAGTGATCCTTATTGTACAGTGAGGTTTCCTGTACAGCGTTCTTCGTCTTGATGAAGCTGAAT

Function

symbol description
slc6a6a Predicted to enable taurine:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport and taurine transport. Predicted to act upstream of or within neurotransmitter transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A6 (solute carrier family 6 member 6).

NR:

description
PREDICTED: sodium- and chloride-dependent taurine transporter-like isoform X1

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function
GO:0005369 taurine molecular_function

KEGG:

id description
K05039 SLC6A6, TAUT; solute carrier family 6 (neurotransmitter transporter, taurine) member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928206.2 True 2804 mRNA 0.49 15 4153038 4177850
XM_026928207.2 False 2771 mRNA 0.49 15 4153037 4177850
XM_026928208.2 False 2613 mRNA 0.49 14 4153040 4177850

Neighbor

gene id symbol gene type direction distance location
abtb1 abtb1,LOC107674366,LOC107696919 coding upstream 21667 4119035 ~ 4131370 (+)
smim24 NA coding upstream 331946 3818404 ~ 3821091 (+)
dohh dohh,LOC106584359,LOC107745802 coding upstream 345553 3802656 ~ 3807484 (+)
haus5 haus5 coding upstream 361416 3778297 ~ 3791621 (+)
mob3a LOC108264984,LOC108439653,LOC100699828,LOC102783145,LOC107585875,LOC104921817,LOC103368804,LOC101067073,LOC107731185 coding upstream 481348 3659850 ~ 3671689 (+)
pcsk1nl LOC108265073 coding downstream 56144 4233994 ~ 4247657 (+)
LOC113535168 LOC108265824,LOC108440552 coding downstream 198784 4376634 ~ 4388950 (+)
fgd1 fgd1,LOC108266043,LOC107552218 coding downstream 216498 4394348 ~ 4445422 (+)
tfe3a LOC108265526,LOC108279478,LOC108440537 coding downstream 272726 4450576 ~ 4479625 (+)
ntpcr ntpcr coding downstream 322935 4500785 ~ 4504839 (+)
G126529 NA non-coding upstream 20368 4069691 ~ 4132669 (+)
G126525 NA non-coding upstream 91971 4060279 ~ 4061066 (+)
G126454 NA non-coding upstream 179753 3970379 ~ 3973284 (+)
G126493 NA non-coding upstream 188941 3907079 ~ 3964096 (+)
G126453 NA non-coding upstream 314402 3833678 ~ 3838635 (+)
G126591 NA non-coding downstream 75894 4253744 ~ 4254762 (+)
G126628 mecp2,LOC107735123,LOC106572920 non-coding downstream 140360 4318210 ~ 4358056 (+)
LOC113535080 NA non-coding downstream 308421 4486271 ~ 4494004 (+)
G127105 NA non-coding downstream 594944 4772794 ~ 4795256 (+)
G127147 abt1 non-coding downstream 663576 4841426 ~ 4842134 (+)
si:ch73-233m11.2 LOC108265197 other upstream 48218 4095269 ~ 4104819 (+)
wdr13 wdr13 other upstream 375547 3750504 ~ 3777490 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other upstream 451334 3684893 ~ 3701703 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other upstream 615748 3445015 ~ 3537289 (+)
znf692 znf692 other upstream 805290 3336380 ~ 3347747 (+)
ssuh2rs1 LOC108264961 other downstream 42800 4220650 ~ 4278077 (+)
plxnb3 plxnb3,LOC108265307,LOC107584917,LOC107601751 other downstream 448235 4626085 ~ 4727880 (+)
srpk3 srpk3,LOC103374712,LOC103366878,LOC107101350,LOC100702848 other downstream 565389 4743239 ~ 4766376 (+)
tbc1d22b tbc1d22b,LOC108438566,LOC107674367,LOC107734531,LOC107653399 other downstream 1669297 5847147 ~ 5907946 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other downstream 2578913 6756763 ~ 6811646 (+)

Expression


Co-expression Network