slc35a3a (slc35a3,LOC108439387,LOC100705874,LOC102790943,LOC101471768)


Basic Information

Item Value
gene id slc35a3a
gene name slc35a3,LOC108439387,LOC100705874,LOC102790943,LOC101471768
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 3036229 ~ 3055064 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928255.2
AggaagtcacacacacacacacacacacacactctctctctctctcacacacacacacacacacacacacagagaggctGCAGTTTTTAAACCCAGCTCTCAGCTTTACTTTCATCCAGGAAGCGTTTCTTTAAAGCGGCATCAAATCAGGACGCGAGCAGAAAGAGGAAGATGGAGGAGTTTAGTGCAGGAAGTGAGattagcattagcgttagcgTTAGCATGTGTCTGAGCACCACAACAACCTGGAGCAGAGGGACAGAGAGTCACACTGCAGCTTAACACACTTACTCAacctcctctttctttctttctttcattcattcattattgttGTTTAGCCTCCATTCAGCGCAGGACAAACCTGGCATCTGTTCCTCTTTTCTCCTCAATCATTCACTTCCGGATTAGCTGAAGAAGTCTTGCCTCGGCTGTGGCTCGCCCCTGAGGGATCGCTAGGCCATGACGTCGGTACGGCTGAAGTACCTCTCTCTGGGTGTGCTGGTGTTCCAGACGACCTCTCTGGTGCTGACCATGCGATACTCGCGCACTCTGCAGGCTGATGGGCCACGTTACCTCGCTTCCTCCGCCGTGGTGCTGGCTGAGCTGCTCAAGATCCTCACCTGCGTCTGCCTCGTCTGCAAAGAGCACAGTTACAGTGTCCGTGCTCTGAGCACCGTCCTCAGGCAGGAGATCCTCCATAAGCCAGTGGAGACGCTGAAGCTGGCCATTCCCTCAGGAATCTACACGCTGCAGAACAACCTGCTGTACGTGGCACTTTCCAACCTCGACGCTGCTACATACCAGGTGACCTACCAGCTGAAGATCCTCACCACTGCGCTGTTTTCTGTCTCCATGTTGGGTCGCAGGCTTGGTCTCTATCAATGGCTCTCGCTCATCATTTTGATGACTGGAGTAGCTCTTGTGCAGtggCCCACGGACTCTTCCTCCGAGAAGCAGCAGCCCACAACGGGGTCTCCGTTCGTGGGTTTGGTGGCCGTGTTGGTGGCCTGCTGCTCCAGCGGCTTTGCTGGTGTTTATTTTGAGAAGATCCTCAAAGAGACCAAGCAGAGTGTGTGGGTCAGAAACATCCAGCTCGGTCTGTTTGGTCTGGTTTTTGGCCTGTTTGGAATGTTACTGTATGacggagagagagtgaaggagcaTGGAATGCTCCAGGGCTACAACTCCGTCACCTGGACTGTGGTTTCATTACAGGCGTTGGGAGGTCTGGTCATAGCCGCTGTTATTAAATACGCAGATAATATTCTGAAAGGTTTCGCCACGTCCCTGTCCATCATCCTGTCTACGCTCATTTCCTACTTCTGGCTGCAGGACTTTGAGCCGACGAGCATCTTCTTCCTGGGAGCCGTGTTGGTCATAGTTGCGACGTTTTTGTACGGCTACGAAAGCAAACCTGCGTCCAACCCGAGCCGAGCATGATGGGAAGCCGGGGACACCAGAGAGCTGATGGAGGTCCAGGATGGAGCTAAAGAGATGGACGGAAGCGCAAGAATGaactgaggaggaggaggaggaggaggacggaGGAGGAAGGAAGGTTGATGGAGATGTCCCTTGTTTCGAAGTGACTTGTTAATTGAGCGAGAGTGTGCACTCATCTGAGAGATCAGAGGCGGAGAGCCGTGGGGAGCCAAACAGGCCTATACCATCAGCGTACATGAAGAGGAAACCTCGGAAAATGATAAAACTAATGTTATATACGCCATAACTCAAGTACTTGAGGAAAGCACTGGAGTGCCATTcggttcagtgtgtgtgtgagatgatccAAGCAATCTGTGATGAGATGATAATataagattgtgtgtgtgcgtgtgtgtgtgtttgtgttttttttaaagccatgtCATGCATCTAACTGCAGGAATTCTTTCCCAAGTACAGCCAGGTGGATTGGCTTTTCACCCATGAACAAACCCCAGACACTGAAAATGCAATGATTATTATAATCTATTCAAACTTGAAgagaaattaatattaaataattttagtaagtatgga
>XM_026928256.2
aacaaaaaaaatttgctgTGCAAACATGGAGTAAGTCGGCTTCCGTGAACCTGTTATCTAATAAAGAGTGACCTATTGTTTAAATTTTGCAGTTGAAGAAGGTGTGGTCAGTGGGAGGTTTCCATCCTGGTACATGAACTCTGTGTCCTCCTTCTGCAGAGCCTCAGTggaaaaatgttacaaaagTGTTAGGAACTGAAGTCAAGTTTcaggtttctgttttttttcccccagaccGTGTCGTTTTAAAGCTTTCTCAGTGTATAGTAAGCTCGCCCCTGAGGGATCGCTAGGCCATGACGTCGGTACGGCTGAAGTACCTCTCTCTGGGTGTGCTGGTGTTCCAGACGACCTCTCTGGTGCTGACCATGCGATACTCGCGCACTCTGCAGGCTGATGGGCCACGTTACCTCGCTTCCTCCGCCGTGGTGCTGGCTGAGCTGCTCAAGATCCTCACCTGCGTCTGCCTCGTCTGCAAAGAGCACAGTTACAGTGTCCGTGCTCTGAGCACCGTCCTCAGGCAGGAGATCCTCCATAAGCCAGTGGAGACGCTGAAGCTGGCCATTCCCTCAGGAATCTACACGCTGCAGAACAACCTGCTGTACGTGGCACTTTCCAACCTCGACGCTGCTACATACCAGGTGACCTACCAGCTGAAGATCCTCACCACTGCGCTGTTTTCTGTCTCCATGTTGGGTCGCAGGCTTGGTCTCTATCAATGGCTCTCGCTCATCATTTTGATGACTGGAGTAGCTCTTGTGCAGtggCCCACGGACTCTTCCTCCGAGAAGCAGCAGCCCACAACGGGGTCTCCGTTCGTGGGTTTGGTGGCCGTGTTGGTGGCCTGCTGCTCCAGCGGCTTTGCTGGTGTTTATTTTGAGAAGATCCTCAAAGAGACCAAGCAGAGTGTGTGGGTCAGAAACATCCAGCTCGGTCTGTTTGGTCTGGTTTTTGGCCTGTTTGGAATGTTACTGTATGacggagagagagtgaaggagcaTGGAATGCTCCAGGGCTACAACTCCGTCACCTGGACTGTGGTTTCATTACAGGCGTTGGGAGGTCTGGTCATAGCCGCTGTTATTAAATACGCAGATAATATTCTGAAAGGTTTCGCCACGTCCCTGTCCATCATCCTGTCTACGCTCATTTCCTACTTCTGGCTGCAGGACTTTGAGCCGACGAGCATCTTCTTCCTGGGAGCCGTGTTGGTCATAGTTGCGACGTTTTTGTACGGCTACGAAAGCAAACCTGCGTCCAACCCGAGCCGAGCATGATGGGAAGCCGGGGACACCAGAGAGCTGATGGAGGTCCAGGATGGAGCTAAAGAGATGGACGGAAGCGCAAGAATGaactgaggaggaggaggaggaggaggacggaGGAGGAAGGAAGGTTGATGGAGATGTCCCTTGTTTCGAAGTGACTTGTTAATTGAGCGAGAGTGTGCACTCATCTGAGAGATCAGAGGCGGAGAGCCGTGGGGAGCCAAACAGGCCTATACCATCAGCGTACATGAAGAGGAAACCTCGGAAAATGATAAAACTAATGTTATATACGCCATAACTCAAGTACTTGAGGAAAGCACTGGAGTGCCATTcggttcagtgtgtgtgtgagatgatccAAGCAATCTGTGATGAGATGATAATataagattgtgtgtgtgcgtgtgtgtgtgtttgtgttttttttaaagccatgtCATGCATCTAACTGCAGGAATTCTTTCCCAAGTACAGCCAGGTGGATTGGCTTTTCACCCATGAACAAACCCCAGACACTGAAAATGCAATGATTATTATAATCTATTCAAACTTGAAgagaaattaatattaaataattttagtaagtatgga

Function

symbol description
slc35a3 Predicted to enable UDP-galactose transmembrane transporter activity. Involved in UDP-N-acetylglucosamine transmembrane transport. Predicted to be located in Golgi membrane. Predicted to be part of Golgi apparatus. Predicted to be integral component of Golgi membrane.

NR:

description
UDP-N-acetylglucosamine transporter-like

GO: NA

KEGG:

id description
K15272 SLC35A1_2_3; solute carrier family 35 (UDP-sugar transporter), member A1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928255.2 True 2025 mRNA 0.50 8 3036229 3055064
XM_026928256.2 False 1859 mRNA 0.49 8 3039948 3055064

Neighbor

gene id symbol gene type direction distance location
notch2 LOC108265554 coding upstream 4504 2951421 ~ 3031725 (+)
sec22bb sec22b,sec22bb,LOC108265393,LOC101168279,LOC100705437,LOC103354218,LOC108439390 coding upstream 109897 2920866 ~ 2926332 (+)
LOC113535040 NA coding upstream 125869 2906725 ~ 2910360 (+)
npl npl coding upstream 129683 2897299 ~ 2906546 (+)
ptgesl ptges2,LOC103370734,LOC104955211 coding upstream 332166 2694963 ~ 2704063 (+)
foxe3 LOC108265253 coding downstream 22056 3077120 ~ 3087181 (+)
foxd2 foxd1,LOC108265081,LOC103022344 coding downstream 34517 3089581 ~ 3098224 (+)
fcho1 fcho1,LOC108264992,LOC107751067,LOC103395380,LOC100695123 coding downstream 294748 3349812 ~ 3399427 (+)
LOC113534995 LOC108264986,LOC108439652,LOC107695253,LOC107585931,LOC107548917,LOC107676994 coding downstream 579636 3634700 ~ 3658044 (+)
mob3a LOC108264984,LOC108439653,LOC100699828,LOC102783145,LOC107585875,LOC104921817,LOC103368804,LOC101067073,LOC107731185 coding downstream 604786 3659850 ~ 3671689 (+)
G125593 NA non-coding upstream 180454 2854757 ~ 2855775 (+)
G125484 rgl1,LOC107717560 non-coding upstream 290666 2705841 ~ 2745563 (+)
G126401 NA non-coding downstream 513925 3568989 ~ 3575303 (+)
G126408 NA non-coding downstream 574738 3629802 ~ 3631632 (+)
LOC117597831 NA non-coding downstream 664278 3719342 ~ 3735098 (+)
G126461 NA non-coding downstream 747480 3802544 ~ 3843737 (+)
LOC117597875 NA non-coding downstream 754192 3809256 ~ 3816185 (+)
LOC113535041 edem3 other upstream 117998 2845709 ~ 2918231 (+)
alkal1 LOC108265007 other upstream 804089 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 1048657 1877028 ~ 1987572 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 1229439 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 1689644 1344336 ~ 1346585 (+)
znf692 znf692 other downstream 281316 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 389951 3445015 ~ 3537289 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 629829 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 695440 3750504 ~ 3777490 (+)
si:ch73-233m11.2 LOC108265197 other downstream 1040205 4095269 ~ 4104819 (+)

Expression


Co-expression Network