si:ch73-233m11.2 (LOC108265197)


Basic Information

Item Value
gene id si:ch73-233m11.2
gene name LOC108265197
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 4095269 ~ 4104819 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928275.2
AGGGCACAGCCCAAGAAGTTTACTTCCTGTTGTCTCCAGAAGCAGTGAGGTGTGTATTCACTGCAGAAGAGTTTGGACTTCAGTTTGTTTCATCCAGAGGAACATCTGacataagaaacaaaatcaGGAAGCAGAAATCTATGAGATTATGGAGGCGAGTTTGGATTATCTCCCTGATGTGCAGAAGTTGCACAAGGAGGTCATGAGGAATGGTGTGACGAAGTCCACCCAGGTCAGCTCCCTTTTAGGTGGCCAGTCAATCAAAGATGTGATTTTAAACAAATGCTACATTCCCCTTTCAGTCAGCATAGACAATAGAGGCTGTCTGACGAACAATGTCAAAAAGTTGGAAAGTGTGATTTCACAGGAGTTTGGAGCAGGCACTGAGGGTGGGAAGTTGCTCCTGTGTGGAGGACCCGGGATGGGCAAGACCACAGCGGTGGAACAGCTCATTTGGGACTGGGCCTCTGGAAGCCATCTTCAGTGCTACACGTTTATCCTGCGATTGTGTTCGAGTGTGCTGCGTGGATCTGAACAGAGTCTGCATAGCACGCTTCtcagcacacacatgcatatctCTGATGAGCATCTTGAGATGATCTTGAAGACGCCTCACACAATACTTTTAGTGTTGGACGACGTCCAGAACCTTCTATCTAATTCTCCTGAATCCGGTAAGCTGGTGTGTGACCCACGTCAGCCAGCAGGGGGTACCGTGTTGGTGCGCAGTTTACTAGAGGGGTCTTTGCTGCCCGGTGTGTCGTTACTGCTCACCTCCAGAGAAGCTGTCAAGCTGGAATCTGTGCGTTTTGCTCACCTGATGGGTTTCTCCAGCTCCCAAAGGAAAGCATTCTTCCAACGCTTCTTTGACAACAAGGAAAAAGGAGAGCAGATTCTCCATCACTGCGAACAAGCTGTGGGCGTGGAGGAGATTTGTGCTTGTCCTGGATTTTGCTGgacactgtgctgtgtgtgcaaaGAGCGACTGGAGCATCAAAATTGTGTTCCGGAGACACTGAGCGAGCTCCACTGCatgatcacacactctctactgCAGGAGCATAAGGTGAGCGTGGAGACAGCAAAGGAGCTGATTTACGGTTTGGGGAAACTCGCAGAACAGTGCACATCTGTCACCTGCACACACTCTGACATCATCAAATGTGACCTTCAACCCTTCCTGGGCTCCCAGATCCTGTCTGCTATCCTGCGCCTCAACGCTGATGATGCCACTTCCCCTGATGCTACGTTCTCCTTCCCGTCTCCGACATTCAAAGACTTCTTAAGGGCGGCCTCCTTTTACCTTGACCATGATGATGGCAAGATCCTAGAAAGTCCCCTGGAAATCCACAACTaccatttttttcttgctgGGCTTTCAGACCCTATGCAGAGGAAGCTTCTGGAAGCCTCCACAGGCCGCTTCGGCAGCGGCCGTCTCTCCGAGTTCCACCGCTGGCTCATGAGTACGGTTGCAGAAGTGCTACCAGGCATAGACAAGATAAATCACTGGCATGTTTTGCGTATCCTCTACCACACACTCAGCCCCACACTGGTCAGGGAGAGCGTGCGCTCGTGCGAGTGGAGGATGCGCAGCTATGATGGCATGCAGGAAGCAGACTGTGCAGCGCTGGCGTTTGTGGTGCGATGTTTAGGAGAACTGCAGTACCTGAACCTGTACAGGAGCTCCCTGACAGAGGAGCAGGCAGAGAAGCTCATGACTGTCTTCCGCTTGGCCAAAACCATCGACTTGACTCAAAGTACAGTGAGTGTGGGTGTGATCAGACATTTTGCTCGGGCGCTGAAAGACGGACGAGCCACCGATGTCAACCTGACCCACTGCAAACTGGGAGACGAAGCAATAAAGATCCTGTGTTCCTCCATCCCACACTCCAGCCTGCATACACTCAAccTGTGGGACTGCCGCCTGACACCGGCGTGTAGTGAAGCGCTCGCTGAGATGTTGTCCACTTctaagctgtgtgtgttgaacCTGGGAGCTAACGAGATAAACGATGAAGGACTCAATCGACTCATCGGTGCACTCGGGACGTCCACGTGCACGCTGCAGGATctttgTTTGGATCTCTGTCCTTTGACTGGATCATGCTTGGCTGCACTGTCGTCTGCCCTGACATCTTCTCTCTCTGAGCTGAGGAAACTGGTCCTGAGTAGGAACAGCCTGGATGATGACACTCTGGAACATCTCTCACAAGCGCTACAAAGTGGCCGCTGCAAACTCAAGAAtctgagTTTATATTCTTGTGAGCTGACCGGTTCCTGCTGCCCGTCCCTAGCAGCCGCACTTCAGTCAGAACACTGCTCTCTGACCAAGCTGGACCTATCCGTGAACCCGCTCGACGAATCAAACACGCTCCTCATCTGTGATGCCCTGAAATCCCCCAATTGTTCACTGGAGAagttaggtatgaATGCGTGTGAGCTGACGGAGCCGGTGTTCAGCGCACTGGgcagtgtgttgatgtgtggAGCGTCCAGGCTGAAGAAACTTCTCATCGGAATAAACAGAGTAGGGGACGCTGCAGTCAAACACATCTGGAAGGCCCTGAAACACCCTCACTGCCAGCTGCAACATCTCGATCTTGAGATGGTGGCTCTGACGGATGCCAGTGTCAACGAGCTGTGTGAAGCCGTCATGGCTTGTGGCTCCTTAACGAGCCTGATTCTGAAGAACAACAACctcactgacatttctgttccCCGATTGGTCAAGCTCGTTCAAGACCGTCCAGGCTTGGAACTGAAtgtGCAGTATAATGACTTCAGCGAGGATGTATTTGAGCTGATGGACGCCTACGAAACAATACAATATTAACACAACATGTGCTTTCACGCAGCAAGAAGAAGCTTATAGACTGAAAAGTGGTTGAATATACGTGTGTTATTAATGCCTCATTTACTGGGAATTCAGTACTAATGCACTCTGTGTGGTTTAATGTGTCCACTAAACCAGAGGCAGGTTTACTGATTTTGGCATAAAAATGGGTAAGGGCTGTCTGTATGATACGAAACATAAGTGTATTTAAAAACTAAGCACAGTATTCTCAGTGTATTACATTGCGTTATACACCATTACATTTGATCATATAATAGTTGCTTGCTAAGAACCGAAGTGAATTTGTTTATTAGCGGgctataatgtgtgttttttttttttttttttttattagagacCCTATGCTGTCTACACTCATGCGAAAGTTCCCTAAAGTTCTTATTTGTATTAGCATTACTTTGTCTTTCTGTGTTTTACAAAATAAGTATGAACTCTA
>XR_004578620.1
TATCAGGGCACAGCCCAAGAAGTTTACTTCCTGTTGTCTCCAGAAGCAGTGAGGTGTGTATTCACTGCAGAAGAGTTTGGACTTCAGTTTGTTTCATCCAGAGGAACATCTGacataagaaacaaaatcaGGAAGCAGAAATCTATGAGATTATGGAGGCGAGTTTGGATTATCTCCCTGATGTGCAGAAGTTGCACAAGGAGGTCATGAGGAATGGTGTGACGAAGTCCACCCAGGTCAGCTCCCTTTTAGGTGGCCAGTCAATCAAAGATGTGATTTTAAACAAATGCTACATTCCCCTTTCAGTCAGCATAGACAATAGAGGCTGTCTGACGAACAATGTCAAAAAGTTGGAAAGTGTGATTTCACAGGAGTTTGGAGCAGGCACTGAGGGTGGGAAGTTGCTCCTGTGTGGAGGACCCGGGATGGGCAAGACCACAGCGGTGGAACAGCTCATTTGGGACTGGGCCTCTGGAAGCCATCTTCAGTGCTACACGTTTATCCTGCGATTGTGTTCGAGTGTGCTGCGTGGATCTGAACAGAGTCTGCATAGCACGCTTCtcagcacacacatgcatatctCTGATGAGCATCTTGAGATGATCTTGAAGACGCCTCACACAATACTTTTAGTGTTGGACGACGTCCAGAACCTTCTATCTAATTCTCCTGAATCCGGTAAGCTGGTGTGTGACCCACGTCAGCCAGCAGGGGGTACCGTGTTGGTGCGCAGTTTACTAGAGGGGTCTTTGCTGCCCGGTGTGTCGTTACTGCTCACCTCCAGAGAAGCTGTCAAGCTGGAATCTGTGCGTTTTGCTCACCTGATGGGTTTCTCCAGCTCCCAAAGGAAAGCATTCTTCCAACGCTTCTTTGACAACAAGGAAAAAGGAGAGCAGATTCTCCATCACTGCGAACAAGCTGTGGGCGTGGAGGAGATTTGTGCTTGTCCTGGATTTTGCTGgacactgtgctgtgtgtgcaaaGAGCGACTGGAGCATCAAAATTGTGTTCCGGAGACACTGAGCGAGCTCCACTGCatgatcacacactctctactgCAGGAGCATAAGGTGAGCGTGGAGACAGCAAAGGAGCTGATTTACGGTTTGGGGAAACTCGCAGAACAGTGCACATCTGTCACCTGCACACACTCTGACATCATCAAATGTGACCTTCAACCCTTCCTGGGCTCCCAGATCCTGTCTGCTATCCTGCGCCTCAACGCTGATGATGCCACTTCCCCTGATGCTACGTTCTCCTTCCCGTCTCCGACATTCAAAGACTTCTTAAGGGCGGCCTCCTTTTACCTTGACCATGATGATGGCAAGATCCTAGAAAGTCCCCTGGAAATCCACAACTaccatttttttcttgctgGGCTTTCAGACCCTATGCAGAGGAAGCTTCTGGAAGCCTCCACAGGCCGCTTCGGCAGCGGCCGTCTCTCCGAGTTCCACCGCTGGCTCATGAGTACGGTTGCAGAAGTGCTACCAGGCATAGACAAGATAAATCACTGGCATGTTTTGCGTATCCTCTACCACACACTCAGCCCCACACTGGTCAGGGAGAGCGTGCGCTCGTGCGAGTGGAGGATGCGCAGCTATGATGGCATGCAGGAAGCAGACTGTGCAGCGCTGGCGTTTGTGGTGCGATGTTTAGGAGAACTGCAGTACCTGAACCTGTACAGGAGCTCCCTGACAGAGGAGCAGGCAGAGAAGCTCATGACTGTCTTCCGCTTGGCCAAAACCATCGACTTGACTCAAAGTACAGTGAGTGTGGGTGTGATCAGACATTTTGCTCGGGCGCTGAAAGACGGACGAGCCACCGATGTCAACCTGACCCACTGCAAACTGGGAGACGAAGCAATAAAGATCCTGTGTTCCTCCATCCCACACTCCAGCCTGCATACACTCAAccTGTGGGACTGCCGCCTGACACCGGCGTGTAGTGAAGCGCTCGCTGAGATGTTGTCCACTTctaagctgtgtgtgttgaacCTGGGAGCTAACGAGATAAACGATGAAGGACTCAATCGACTCATCGGTGCACTCGGGACGTCCACGTGCACGCTGCAGGATctttgTTTGGATCTCTGTCCTTTGACTGGATCATGCTTGGCTGCACTGTCGTCTGCCCTGACATCTTCTCTCTCTGAGCTGAGGAAACTGGTCCTGAGTAGGAACAGCCTGGATGATGACACTCTGGAACATCTCTCACAAGCGCTACAAAGTGGCCGCTGCAAACTCAAGAAtctgagAAGACATTGCCATGAGCTGGACAGATTTCATGCAGCAAGTAGCAATCATGGTAAAGTCAGAGGAGCTTCCTGGAGTTCTCAGGGATGACGTTATTAAACAGCGATCGCATGGAAAAAGCTACAGCCTCAGGCATAGCAAAGACCATAAACGTCCCATTGAGTACATTTGGTTCAATAATATGCTGGTGCACAGTTCAATAATCCTCCATGAACAATTTATATTCTTGTGAGCTGACCGGTTCCTGCTGCCCGTCCCTAGCAGCCGCACTTCAGTCAGAACACTGCTCTCTGACCAAGCTGGACCTATCCGTGAACCCGCTCGACGAATCAAACACGCTCCTCATCTGTGATGCCCTGAAATCCCCCAATTGTTCACTGGAGAagttagg

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928275.2 True 3293 mRNA 0.49 9 4095273 4104819
XR_004578620.1 False 2646 misc_RNA 0.51 7 4095269 4101689

Neighbor

gene id symbol gene type direction distance location
smim24 NA coding upstream 274178 3818404 ~ 3821091 (+)
dohh dohh,LOC106584359,LOC107745802 coding upstream 287785 3802656 ~ 3807484 (+)
haus5 haus5 coding upstream 303648 3778297 ~ 3791621 (+)
mob3a LOC108264984,LOC108439653,LOC100699828,LOC102783145,LOC107585875,LOC104921817,LOC103368804,LOC101067073,LOC107731185 coding upstream 423580 3659850 ~ 3671689 (+)
LOC113534995 LOC108264986,LOC108439652,LOC107695253,LOC107585931,LOC107548917,LOC107676994 coding upstream 437225 3634700 ~ 3658044 (+)
abtb1 abtb1,LOC107674366,LOC107696919 coding downstream 14216 4119035 ~ 4131370 (+)
slc6a6a slc6a6a,LOC108264963,LOC108441104,LOC107696920,LOC107552205,LOC107714566 coding downstream 48218 4153037 ~ 4177850 (+)
pcsk1nl LOC108265073 coding downstream 129175 4233994 ~ 4247657 (+)
LOC113535168 LOC108265824,LOC108440552 coding downstream 271815 4376634 ~ 4388950 (+)
fgd1 fgd1,LOC108266043,LOC107552218 coding downstream 289529 4394348 ~ 4445422 (+)
G126525 NA non-coding upstream 34203 4060279 ~ 4061066 (+)
G126454 NA non-coding upstream 121985 3970379 ~ 3973284 (+)
G126493 NA non-coding upstream 131173 3907079 ~ 3964096 (+)
G126461 NA non-coding upstream 251532 3802544 ~ 3843737 (+)
G126453 NA non-coding upstream 256634 3833678 ~ 3838635 (+)
G126549 LOC108265196 non-coding downstream 6755 4111574 ~ 4185080 (+)
G126591 NA non-coding downstream 148925 4253744 ~ 4254762 (+)
G126628 mecp2,LOC107735123,LOC106572920 non-coding downstream 213391 4318210 ~ 4358056 (+)
LOC113535080 NA non-coding downstream 381452 4486271 ~ 4494004 (+)
G127105 NA non-coding downstream 667975 4772794 ~ 4795256 (+)
wdr13 wdr13 other upstream 317779 3750504 ~ 3777490 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other upstream 393566 3684893 ~ 3701703 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other upstream 557980 3445015 ~ 3537289 (+)
znf692 znf692 other upstream 747522 3336380 ~ 3347747 (+)
LOC113535041 edem3 other upstream 1177038 2845709 ~ 2918231 (+)
ssuh2rs1 LOC108264961 other downstream 115831 4220650 ~ 4278077 (+)
plxnb3 plxnb3,LOC108265307,LOC107584917,LOC107601751 other downstream 521266 4626085 ~ 4727880 (+)
srpk3 srpk3,LOC103374712,LOC103366878,LOC107101350,LOC100702848 other downstream 638420 4743239 ~ 4766376 (+)
tbc1d22b tbc1d22b,LOC108438566,LOC107674367,LOC107734531,LOC107653399 other downstream 1742328 5847147 ~ 5907946 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other downstream 2651944 6756763 ~ 6811646 (+)

Expression


Co-expression Network