pcsk1nl (LOC108265073)


Basic Information

Item Value
gene id pcsk1nl
gene name LOC108265073
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 4233994 ~ 4247657 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928336.2
cccctccctccatCTGGATCACTCCATCTGTGGTCCGGAGCTCAGTGGCGGCGTATCTCTCTGTCATAAGGGGCAGCTTCATTCTCTCCTGCAGGATGTCGGGCCCTCGCACCAGCTCCATACTGCTCCTCTTCTGCGTGGCTTTCCTCCAGAATCCGCTCCTGGAGgccaagccTCTCTCTGCCATGCATGGGGGCGGAGCTGCACGCCTTCGTCGTGACCTGCGTGATGCACTGCCTTACGAGGCTCAGATGATGTCATACCCTCCTGCCGGCTTCAATGGACGGGGCAACGATCTGTACTACCAGCCAGAGGCCTTGAGAGCACAGGGGCTGGGCCACGCCCTGCATCGCCTGGAGAACGACCAGAGGCAGGAGCAGGAGGCAGCCTACCTAGCAGGTTTACTGCGCCTCCTGAGTGAGGCAGAGAGTAAAGGCCAAGCAAGaccagaggaagaggaagagcaggTGGAAGGTGATTTCCAGGAATCATACCCTCCAGATTATGATGAGACAGAGCAGACGGTGAACATGGCCAAACCCCAGGCACTGCTGGACCCACAGCTCACCGAGGCGCTGCTCAACCACTACAGGCAGGAGAGGATGCTTCAGGCAGGGAAGGACCGAGACCAGGAGATGCTCCGGTACCTGGTGGAGAAGGTCCTCTCGAGTCTGGCATCTGAGAACCAGCTGAACCCATCCAACCGCCGAGGCAAATGGGAAGTGGCAGCAGCAGCCAGCATTGGACGTGACAGAGCTACGCCTCTGAGACGAGCTAGGCGCTCTCTAGACTCCGCCCCTGTTGCCTCCCCTGATGCCGAGGCCTCGCTACTGCGGGTGAAGCGAGTGGGTGATGAAGACCATGATGATTTTGCTGGTCAGAACAACCGGTCACCCCATGCTGGCCTGCAGAGGATGAAGCGCATCGACACAGATCTGCCTCCACCTGCGAAGCACAGCCGCAAACGCCGCTCGGTGACCTACGACCCTGAGCTCATCGCTCAGCACATCATCCAGTAcctgagaaagtgagagagagaaaaagaggaagacagaaagattgCAACAGTTCACATGCTGACAGATATATGCGAGAACTCACTGTTAACTGCTTCTGTCTGGCGAACCAATGTATCTGCTTCAGTGCTATAATAAAATGGTAAACACATTCAATTATTTGTTCCACATGCTAATGCATATGagcaaatgtaatttttatttatgggTTTGCAGTAGATGCAGTGATGCACTGCAGTTGGCAACCTGTCAGTCCTGGTAGTTCAGATATTGGTATTGACATCAGTTGAGTTCCACTTGAGTCTCAAGACCAAATTATCCTTTTCTTAAATTGAGTTTTCTTAATCTGAATCACTGACAGTGAGCGGTAAATCATGACCTTATACGTTTAAAACTTTCTATagtcaaaaatgtaaaatctttcTCCCCAAAGGAGTAGCTGTTTTCTCGACATACTGGCCATCATCAACACAGTGGACACAATATCAGAATAGCACCTTATGAATTTACCTATTTTATCCTTAAAAGAGACTGGACTTTCCAAGGTCACCAGCCCTTTTACTGGGATTAAATAATGCTACACTTCTAGCATTACAGGAActattttaaagaaaaccttTAAAGATATGACATCATGAAAATAGGTTATCCTAGGTTATCCTAAAGTGCCACAACCCCAAGCCTTTACTAATAGCAAATGAGTAAATGGGCCATTAATGGTCCATACTTACCACTTTATCTAGCCCACATAATCCTTGAGGAATGACAGTTAAATATATCCCAATTTAGCTGCCAGAACACAGCCTTAACAGCCTTGCTGAACTAGCATGTTCAATGCAAAATTGAAAATTTAAATCGTTTTTTGTATTTGTGCCATTCCCAActgtttttggattgtttttggTTACTTactattgaaaaaaatatttgcctTTGCCATCACTGGCCTTTATATTCTTAAACCCAACCATATTTGGCTTGGTTTATGGCAAAGTGAAACCCCCAAATTAGCTCTAGAAGTAAGGTAAATTCCGATCAACCCTCTAGCACACAGGTTTCGATTCCTGGTCCTAGTATACACGCCCATTATCCTGCAGATTTCAGTGATTTCCCTTGTCTCAACACATCTGATTCAATTAATCAGCTActtaacagcccttcctgagttaAAGTTGTGTCTTAGAGCTGGGAGAACAATAAAATGTATGGGCCAGGGGGTTCCCCAGGATCAGGGTTGTGAACCTGTCTCCTAGTATATACTATTTGTATGTATATGGTGGTGGTTTgatttcttttctgtctttttcataGCATGTTTCAACATATAAAGCACTAAAATGCAGAATTTTTTTGTCCCCTAAGCCCATAGCCTTCTATCAAGCTTGTATGAGGCAGCAGTggatcagtggttaaggcattgggcGACTGATTGAAAGGTTATGAGCTTAAATCTCAGCATCACTAAGCTggcactgttgggcccttgaacaAGTTGCTTAACCCTTcatctgctcagttgtatcTTGTCTCACTTGTAAGTCACATTGGATTAAAGCAACAACAAAATGAGTTTAATTTAAATCAAGCTCTTGGTCATGAAAGTGTATGGATTTGCAGCTAGCACATATATAAATGGTAGCAAATGGTATTGCTGCAGTGTTCTTGCGTCGAgacatttgtttttgtccaaGACCTTTGCAGAATATGGTGTCACAGTTAGTTTGAGAGTTTAATACAAATCTCAAGAATGTCTATCAGAAAACTGATAAGGAACATTCCAGTTGGAATCATCTATGTAACCAACAAATTAGCTTTGGAAATAGTTTCCCAGATCAAAAAAAGACAGGCTTTACTGCCACAGATACAAGTCAACCTACATTTTTTCTTATGCTAGCATGTTAGATATTGTGGGGTCTGAGTGGAGGGTCAGCCATGATGAAGcaccctggagcagagagggtcacaggccttgctcaagggcccaacagtggcagcttaaTGGTACCAGGGATTGAACTCACAACCTGTTGATCAGCATCCCAGAGCATGAACCACTGCGCCACCACTTCCCCAGCATGACGTAATACAAGGGGCAGGATATATATGTATTCGACCTTTATGGCTGTGATGACTTGGCTGTCTTTCAAGAGCAACTGGTCTGCTGTACACTTTAATGTTTTCCCATGGGTTAACAAATATTATGACCTGTGATGTGAACTTTATCCAATTTGCCCCATCTGCACCAAAGATAACATCACCCAGTGGATTATCAGCCTTAGATATTGAGAGCTAGATTAAATGGAAGACTGAGTGTAGGtttcttttaaacatattgTTGGACCAAAAATCCAAACAGGACTAAGAGCCACCAATTACTACAATGCTAACTGGTGTTATCCATTTATCATTGAGATAGTTGATATTTTAAGAGGAACTGTTCATAAAGCAAACACTAGGACAGACACCGTCTTCACTGAAAACTCTTTATTGAGCAAACTATGAGATATTTGaatatagtagtagtagtagaagatCGTGATTCAGTAATGACCACAAAACACCAGAGTTCACATATGAAAACGTCTTGGCTCCTGCTTTTTACGCAGCTTTATACAGCCAGACTGAGCCTAAGCACAAGGGTTGCTGAGAATATTgtctattacattattatttaaatatatcaaaTTTCACTCAACTCAATTTATCAGTCAATGAGCCATGAAATAGCAGACCTATTGTGGTACGACCTCAGACGTTGGCATTGAAGCACACAGCAAAATTCCCAGCACTGTGTTAATTCTTTAGGTCCGGCTGGACATATAATAAAATTAGGCGTTAACTGAGCACTGTGTTGTTCTGCTCTCTTTCTGATCTCGTGTTTGGACAGCGTTTGACCTGCATGTATTACTGAAACCTACTCTGACCATCCTCGCTGTGGACGAGTCAGTCACTGTTGTTCTGCTTCCTCTTGCTTCGCCACTGGCTTTAGTACATTAACGTGCCAACAAAACGATGACGCTGGCTGTGTTTTACACATAACCTCCCCTTTGGAGCTCCCTCTCTGATTACTCTATATGAGAATATGTGCAAGAAACTGTGTTTTAAATCTTAATTATATGCTTTTTGTTTCCCTATCTGTGTGGTTATGAAAACTTAATCTTATAACTCTTATGCATCTGTGACTAGCAGGTGGGattgtaaaatgaaatgagaaaaaaacgaGTTATAATAAAAATTGGATGTCGATGTCAAAATCAGTTCTTTGTTCTTCTGTACTCATCATTCACTTTAGAGCTCAATATTTGCTCATGCACTGTGTTGCTAATGCAATGTGTAATAAACGTTGATTGCAATGTTTCATGAAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108265073

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928336.2 True 4382 mRNA 0.44 3 4233994 4247657

Neighbor

gene id symbol gene type direction distance location
slc6a6a slc6a6a,LOC108264963,LOC108441104,LOC107696920,LOC107552205,LOC107714566 coding upstream 56144 4153037 ~ 4177850 (+)
abtb1 abtb1,LOC107674366,LOC107696919 coding upstream 102624 4119035 ~ 4131370 (+)
smim24 NA coding upstream 412903 3818404 ~ 3821091 (+)
dohh dohh,LOC106584359,LOC107745802 coding upstream 426510 3802656 ~ 3807484 (+)
haus5 haus5 coding upstream 442373 3778297 ~ 3791621 (+)
LOC113535168 LOC108265824,LOC108440552 coding downstream 128977 4376634 ~ 4388950 (+)
fgd1 fgd1,LOC108266043,LOC107552218 coding downstream 146691 4394348 ~ 4445422 (+)
tfe3a LOC108265526,LOC108279478,LOC108440537 coding downstream 202919 4450576 ~ 4479625 (+)
ntpcr ntpcr coding downstream 253128 4500785 ~ 4504839 (+)
cxxc1a cxxc1a,cxxc1,LOC108265945,LOC107727409,LOC107674299,LOC108440538,LOC107743112,LOC107701818 coding downstream 257756 4505413 ~ 4512377 (+)
G126549 LOC108265196 non-coding upstream 48914 4111574 ~ 4185080 (+)
G126529 NA non-coding upstream 101325 4069691 ~ 4132669 (+)
G126525 NA non-coding upstream 172928 4060279 ~ 4061066 (+)
G126454 NA non-coding upstream 260710 3970379 ~ 3973284 (+)
G126493 NA non-coding upstream 269898 3907079 ~ 3964096 (+)
G126591 NA non-coding downstream 6087 4253744 ~ 4254762 (+)
G126628 mecp2,LOC107735123,LOC106572920 non-coding downstream 70553 4318210 ~ 4358056 (+)
LOC113535080 NA non-coding downstream 238614 4486271 ~ 4494004 (+)
G127105 NA non-coding downstream 525137 4772794 ~ 4795256 (+)
G127147 abt1 non-coding downstream 593769 4841426 ~ 4842134 (+)
si:ch73-233m11.2 LOC108265197 other upstream 129175 4095269 ~ 4104819 (+)
wdr13 wdr13 other upstream 456504 3750504 ~ 3777490 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other upstream 532291 3684893 ~ 3701703 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other upstream 696705 3445015 ~ 3537289 (+)
znf692 znf692 other upstream 886247 3336380 ~ 3347747 (+)
plxnb3 plxnb3,LOC108265307,LOC107584917,LOC107601751 other downstream 378428 4626085 ~ 4727880 (+)
srpk3 srpk3,LOC103374712,LOC103366878,LOC107101350,LOC100702848 other downstream 495582 4743239 ~ 4766376 (+)
tbc1d22b tbc1d22b,LOC108438566,LOC107674367,LOC107734531,LOC107653399 other downstream 1599490 5847147 ~ 5907946 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other downstream 2509106 6756763 ~ 6811646 (+)
mrps36 LOC108265361 other downstream 3176344 7424001 ~ 7430997 (+)

Expression


Co-expression Network