LOC113535168 (LOC108265824,LOC108440552)


Basic Information

Item Value
gene id LOC113535168
gene name LOC108265824,LOC108440552
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 4376634 ~ 4388950 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928362.2
agaaacacttcaggacctgGTCACTGTAGTGGCCTTCAAAATGGCGGCGTGTTTTCCTCAGAGAAATGTAGCAAGGGCAAGTTAATGAGGTTGCATTATGTTTGTAATGAAACAGGACCCTAATTCACTTTATTTCACCACTTCATAGATTTACTTCAATATTTACTTCAGTACATCGAACAGTAACGAAACTGGGCAGTAGAATGCCTTTTTAATTCAATCCTTTCCATACTATTTACAGCTTCTCTAATCGTCGACCGGAAGTGCCTGCAAGCTGGCCTTGTGCACGCGCTGAACTCGAGTTCATTTTGTATTTGGATAAGTTTTATATCTGTCTTATATTAGACTCGCTTTTAATTTCAGAAACGGGCGATGTTCACGATTCCGGTGCTTTACGTTGCGTTTAATCTTTTTCTCGCCACGGCTGCGGATAAAGCTTTAGCAGAGAAAGGGCGCGTGGAGCTACAGAAGCTGCGGGAGTTTGCGGGTCAGACGCGGTATGGCGCGTGCTGGTCCAGGGCGCTGGAGAAAGTCCATGCAAACTGTCGGGATTTCTCCGACGACACGCAGAGTATGATGGCTCTGGCCTTCACTCACTGTCACCTGAGAAGGTCTGGACGGAGTTTTCCGGAGTGTCCTGAGGGCAGCGATGTTAAAACGTGCACTCGCGACATGGACCCCGTCGCTTTTAATACCTACACAGAGTTCTTCACCCACGCCCACAGCATTTGCCACTACCTCCAGAGTGAGCAGTGGCAGCATCGGGCAGAAAACACCATCCACAGGCTGACGGAGAGTTCAGCCGGTGTGGCCGAGCAGCTTGCGTCCACCCAGAGGATGGCTGAGGATCTAGTGGAGGCCCAAAGTGCTGCTCTGAAATCTCAGGAAACCATCCTGCGCAACGGAGAAGAGCTGAAGACCACACTGCAGCACTCCACAAAGGGTCTGAGGGATGTGTTTGCTGAGATGAGGCATTCTGTTGAGGAGCAGCAGGTGGCGTTTGCCGAGATCTTTAACCGCGTCGCTTTCCTTCAGAGCTTCATCATGTCTGAGTCACACACCCTCAGCTCTCTGTTGTACAATGCGCTGGGGCTCTGTGCATCCTTCCTGCTCACCTCTACACGCCGCACCTCAGGAGCGAGGCTTTTTCTGTTCGGGCTGGTGGCTCTGAATGTGTACCTGGAGCGTCTGATTTGTAGGACGGTGCTGGAAGATGATAATCCCGGATATCAGCAGATGGAGCGGATCACCTTTTTGGTCGGGCTTCTCAGGAAGGCCATGGTGATGATCGCCTGCATTGTTCTGCTGTACTTTGCCTCCCGGTTCCGCAATGTGAACAGGGAAAGTCTGGAGATCCTGAAGGAGCTGAAAGAGACTCAAACTAATCTTAAGCAAACCTTGAGGAAAGCAGagcGTCTTTCAGGGTATTTAAATGACTGGACTGAGCCCAGACAGAAGCAATGGGGTGGAAAGTGGGAACAAGAAGAGGGGAGCAGTTTGGTCATTTTGCATTCTTCTGGCGCCGTAGAGGCCACCTTGCCGTCACTTTCTTCCCTTCACAGGAGCCGGCAGTGTGAGAGCTTTGTTCCACCACTGGAGGCTCCGAGCACCTCAGAGATCCCAAAGAGAAGGCAGCGTCGTTCTTCAGGCTCCCGTGTGCGTAACTCTTCGGCACTCGTCTACAGCGTGATAGTGGAGGACAGCCACAACCAGCCGAGGTACAGCCTGAGGAGCAGGAAATCCTTATGCGCCCTGGAGCCAAAAGGCGAGAGAGACTGATACTGATCTGTCCAGgagcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggcgaGGGAGTGTGACGAGTGACCACATCTGTGAAATATGGATTCCTTTTAGCTGTTGTGATCACGTTTCACATTTTTATGGATTTCTTGTGGATTCGTTTAATAAATacggttttattattatta
>XM_026928364.2
agagttggCAACTGGATACAAAGCAGACATTAATGCACATTTGTAGGGAGTGTGATAGGAATTGgtacattttcagaaaaaagatATATTCTTTGAATCATCAGTCCTCCAGAGTCTTCTAAGAAACATAAATTTATAAGGTCTGGACGGAGTTTTCCGGAGTGTCCTGAGGGCAGCGATGTTAAAACGTGCACTCGCGACATGGACCCCGTCGCTTTTAATACCTACACAGAGTTCTTCACCCACGCCCACAGCATTTGCCACTACCTCCAGAGTGAGCAGTGGCAGCATCGGGCAGAAAACACCATCCACAGGCTGACGGAGAGTTCAGCCGGTGTGGCCGAGCAGCTTGCGTCCACCCAGAGGATGGCTGAGGATCTAGTGGAGGCCCAAAGTGCTGCTCTGAAATCTCAGGAAACCATCCTGCGCAACGGAGAAGAGCTGAAGACCACACTGCAGCACTCCACAAAGGGTCTGAGGGATGTGTTTGCTGAGATGAGGCATTCTGTTGAGGAGCAGCAGGTGGCGTTTGCCGAGATCTTTAACCGCGTCGCTTTCCTTCAGAGCTTCATCATGTCTGAGTCACACACCCTCAGCTCTCTGTTGTACAATGCGCTGGGGCTCTGTGCATCCTTCCTGCTCACCTCTACACGCCGCACCTCAGGAGCGAGGCTTTTTCTGTTCGGGCTGGTGGCTCTGAATGTGTACCTGGAGCGTCTGATTTGTAGGACGGTGCTGGAAGATGATAATCCCGGATATCAGCAGATGGAGCGGATCACCTTTTTGGTCGGGCTTCTCAGGAAGGCCATGGTGATGATCGCCTGCATTGTTCTGCTGTACTTTGCCTCCCGGTTCCGCAATGTGAACAGGGAAAGTCTGGAGATCCTGAAGGAGCTGAAAGAGACTCAAACTAATCTTAAGCAAACCTTGAGGAAAGCAGagcGTCTTTCAGGGTATTTAAATGACTGGACTGAGCCCAGACAGAAGCAATGGGGTGGAAAGTGGGAACAAGAAGAGGGGAGCAGTTTGGTCATTTTGCATTCTTCTGGCGCCGTAGAGGCCACCTTGCCGTCACTTTCTTCCCTTCACAGGAGCCGGCAGTGTGAGAGCTTTGTTCCACCACTGGAGGCTCCGAGCACCTCAGAGATCCCAAAGAGAAGGCAGCGTCGTTCTTCAGGCTCCCGTGTGCGTAACTCTTCGGCACTCGTCTACAGCGTGATAGTGGAGGACAGCCACAACCAGCCGAGGTACAGCCTGAGGAGCAGGAAATCCTTATGCGCCCTGGAGCCAAAAGGCGAGAGAGACTGATACTGATCTGTCCAGgagcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggcgaGGGAGTGTGACGAGTGACCACATCTGTGAAATATGGATTCCTTTTAGCTGTTGTGATCACGTTTCACATTTTTATGGATTTCTTGTGGATTCGTTTAATAAATacggttttattattatta
>XM_034306373.1
CCTTCATCCGCTGTGCTTTTGGAGGTGAATCCAGTAGATCGAAATGATTGATGATGTAATAGCTGAtgtcaaaacatgacattcattaCATGGGGTTCTAAAGCTGCGTCTGGACGGAGTTTTCCGGAGTGTCCTGAGGGCAGCGATGTTAAAACGTGCACTCGCGACATGGACCCCGTCGCTTTTAATACCTACACAGAGTTCTTCACCCACGCCCACAGCATTTGCCACTACCTCCAGAGTGAGCAGTGGCAGCATCGGGCAGAAAACACCATCCACAGGCTGACGGAGAGTTCAGCCGGTGTGGCCGAGCAGCTTGCGTCCACCCAGAGGATGGCTGAGGATCTAGTGGAGGCCCAAAGTGCTGCTCTGAAATCTCAGGAAACCATCCTGCGCAACGGAGAAGAGCTGAAGACCACACTGCAGCACTCCACAAAGGGTCTGAGGGATGTGTTTGCTGAGATGAGGCATTCTGTTGAGGAGCAGCAGGTGGCGTTTGCCGAGATCTTTAACCGCGTCGCTTTCCTTCAGAGCTTCATCATGTCTGAGTCACACACCCTCAGCTCTCTGTTGTACAATGCGCTGGGGCTCTGTGCATCCTTCCTGCTCACCTCTACACGCCGCACCTCAGGAGCGAGGCTTTTTCTGTTCGGGCTGGTGGCTCTGAATGTGTACCTGGAGCGTCTGATTTGTAGGACGGTGCTGGAAGATGATAATCCCGGATATCAGCAGATGGAGCGGATCACCTTTTTGGTCGGGCTTCTCAGGAAGGCCATGGTGATGATCGCCTGCATTGTTCTGCTGTACTTTGCCTCCCGGTTCCGCAATGTGAACAGGGAAAGTCTGGAGATCCTGAAGGAGCTGAAAGAGACTCAAACTAATCTTAAGCAAACCTTGAGGAAAGCAGagcGTCTTTCAGGGTATTTAAATGACTGGACTGAGCCCAGACAGAAGCAATGGGGTGGAAAGTGGGAACAAGAAGAGGGGAGCAGTTTGGTCATTTTGCATTCTTCTGGCGCCGTAGAGGCCACCTTGCCGTCACTTTCTTCCCTTCACAGGAGCCGGCAGTGTGAGAGCTTTGTTCCACCACTGGAGGCTCCGAGCACCTCAGAGATCCCAAAGAGAAGGCAGCGTCGTTCTTCAGGCTCCCGTGTGCGTAACTCTTCGGCACTCGTCTACAGCGTGATAGTGGAGGACAGCCACAACCAGCCGAGGTACAGCCTGAGGAGCAGGAAATCCTTATGCGCCCTGGAGCCAAAAGGCGAGAGAGACTGATACTGATCTGTCCAGgagcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggcgaGGGAGTGTGACGAGTGACCACATCTGTGAAATATGGATTCCTTTTAGCTGTTGTGATCACGTTTCACATTTTTATGGATTTCTTGTGGATTCGTTTAATAAATacggttttattattatta

Function

NR:

description
PREDICTED: uncharacterized protein LOC108265824 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928362.2 True 1966 mRNA 0.51 9 4376816 4388950
XM_026928364.2 False 1495 mRNA 0.51 9 4376634 4388950
XM_034306373.1 False 1462 mRNA 0.52 9 4377996 4388950

Neighbor

gene id symbol gene type direction distance location
pcsk1nl LOC108265073 coding upstream 128977 4233994 ~ 4247657 (+)
slc6a6a slc6a6a,LOC108264963,LOC108441104,LOC107696920,LOC107552205,LOC107714566 coding upstream 198784 4153037 ~ 4177850 (+)
abtb1 abtb1,LOC107674366,LOC107696919 coding upstream 245264 4119035 ~ 4131370 (+)
smim24 NA coding upstream 555543 3818404 ~ 3821091 (+)
dohh dohh,LOC106584359,LOC107745802 coding upstream 569150 3802656 ~ 3807484 (+)
fgd1 fgd1,LOC108266043,LOC107552218 coding downstream 5398 4394348 ~ 4445422 (+)
tfe3a LOC108265526,LOC108279478,LOC108440537 coding downstream 61626 4450576 ~ 4479625 (+)
ntpcr ntpcr coding downstream 111835 4500785 ~ 4504839 (+)
cxxc1a cxxc1a,cxxc1,LOC108265945,LOC107727409,LOC107674299,LOC108440538,LOC107743112,LOC107701818 coding downstream 116463 4505413 ~ 4512377 (+)
mbd1a LOC108265790 coding downstream 123605 4512555 ~ 4540256 (+)
G126628 mecp2,LOC107735123,LOC106572920 non-coding upstream 18578 4318210 ~ 4358056 (+)
G126591 NA non-coding upstream 121872 4253744 ~ 4254762 (+)
G126549 LOC108265196 non-coding upstream 191554 4111574 ~ 4185080 (+)
G126529 NA non-coding upstream 243965 4069691 ~ 4132669 (+)
G126525 NA non-coding upstream 315568 4060279 ~ 4061066 (+)
LOC113535080 NA non-coding downstream 97321 4486271 ~ 4494004 (+)
G127105 NA non-coding downstream 383844 4772794 ~ 4795256 (+)
G127147 abt1 non-coding downstream 452476 4841426 ~ 4842134 (+)
G127155 NA non-coding downstream 496070 4885020 ~ 4939386 (+)
LOC117597829 NA non-coding downstream 662281 5051231 ~ 5053827 (+)
ssuh2rs1 LOC108264961 other upstream 98557 4220650 ~ 4278077 (+)
si:ch73-233m11.2 LOC108265197 other upstream 271815 4095269 ~ 4104819 (+)
wdr13 wdr13 other upstream 599144 3750504 ~ 3777490 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other upstream 674931 3684893 ~ 3701703 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other upstream 839345 3445015 ~ 3537289 (+)
plxnb3 plxnb3,LOC108265307,LOC107584917,LOC107601751 other downstream 237135 4626085 ~ 4727880 (+)
srpk3 srpk3,LOC103374712,LOC103366878,LOC107101350,LOC100702848 other downstream 354289 4743239 ~ 4766376 (+)
tbc1d22b tbc1d22b,LOC108438566,LOC107674367,LOC107734531,LOC107653399 other downstream 1458197 5847147 ~ 5907946 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other downstream 2367813 6756763 ~ 6811646 (+)
mrps36 LOC108265361 other downstream 3035051 7424001 ~ 7430997 (+)

Expression


Co-expression Network