abtb1 (abtb1,LOC107674366,LOC107696919)


Basic Information

Item Value
gene id abtb1
gene name abtb1,LOC107674366,LOC107696919
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 4119035 ~ 4131370 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928566.2
CATTACTCCGTGTTCCTGTTTACGTCTGGCTGAAATTTCAGGAAAGAGAAGACGACAGTGACGGTGCAGCCTGATCCGCGCCTCATAAAGAGGTTTAAAAGTGGTATTTTGCAGTAAAACTTGCAGCACTGCGCCTGCGCTTCTCCTGTCGTCAGACAGGCCGTTTCAATGCATTACAGAGAGCCGTTATCACCGCGGAGATGGACGCCAGCGACCTGTTCTCGAGCTGCAGAAAGGGCGACGTTGCCAGAGtgagataCCTGGTTGAACAGAGAGATGTGGAACTGAACATAAGAGATAACTGGGACAGTACACCTCTgtacTATGCATGCCTCTGTGGACATGAGGAGTTGGTGCAGTATTTGTTGGCCAATGgagcgAAATGTGAAGCGAACACGTTCGATGGTGAGCGATGTCTATACGGCGCTCTAAGCGACTCCATACGCCGCCTGCTCAAGGAGTACAAGCGCATCACGGCTAAAACCATGCAGCGGGATTACTACGAGCAGTTCCTGCAGacgCTGCTGGAGCAGGGCTCATACAGCGATGTGACGTTCATGGTGCACGGCGAGATGTTCCGCACACACCGCTGCATCCTCAGCGCCCGCTCCGAATACTTCGCCCACATGCTGGAGACCAAGTGGAGGGGCAAGACCATGATCGCTCTCAAACATCCACTGgTGAACCCAGCTGCGTTCGCCGCCATCCTGCAGTACTTCTATACTGGTCGGCTGGACATCGACGTGAGTTACGTGGAGGACTGCAAGCGTCTGGCCAAGCAGTGCAAAATCAGCGAGCTCATCGAGGAGCTGGAGGTCAAGTGCAAGCAGGTGCAAGAGTTTGtgTCCAATAAGCCGGGGACGTGCGTGAAGGTGCTCACTCTGGATCCTCACGACTGGCAGCTGCAGGACGGCATGGCTCTGTTAGCCGACAGCGCTCTCCCCGCTGATCTGAGGGTTGGATACGGGCAGCTTCCTTTTGATTTGACTGACAGTTTTCCGAGCTACCCTGACATCTGCTTCCGGGTGGACGGTTATGACTTCCTGTGTCATAAGGCATTTTTCTGTGGCCGTAGTGATTACTTTAAGGCATTGGTGGAAGATCATTTCAGTGAGGGAGAAACCCTGCAGTCTCTCCCCGAAGTTCCTGTCATCACCCTACATGATGTATCTCACGAGTTATTCACCAAAATCCTCTACTACATCTACAGTGAtaacacacagctgtCCCATGATAGCGTGTATGAGGTGCTGTGTGTAGCAGACATGTACCTGCTGCCGGGTCTAAAGCGTCTGTGTGGCCGCACCCTGGCCGCGCTGCTCAGTGAGGAAAACGTTCTGCACATGTGGAAGACGGCCAAACTGTTCAGCCTGTCACGCCTCGAGGACCAGTGCACAGAGTACATGGCCAAGATCATCGAGAGGctggTGGAAAGGGCAGAGTTTGCAGAGCTAATCCGAGAGGATGCTGCGAGCGTGGCGGCGCGCCAGGAGACGGACTCCATCCCGCTGGTGGACGATATCCGCTACCACATCAGCAGCAGCGTTCAGACGTACAGCGCCATCGAGGAGGCCAACCAGAAAGTGCATGCTCTCGAGCTCCTGCTCAACTACATCGGCCTGGACTGCTGAACACACACGCAGGCTGACGCATAGGATAACACAATGTGACGTTACGGCTTTATTTATGCTTTCTGTGCACCTGAAATGAGTAGCATTCAGTTAACAGTAACAGCCGGGTAACAGCCTGATATTTAACTCGCTCTAATATACAACCATGCTGAGTGAAGTTTATTAAAAGCTTTAAGTAAGTTTACTTATTGTTTTTACTTTAGATTAGATTCTGTTATTATTAACCTGAACAAGAACCAgtcaaatattttttgtgtatcCGTTTAGCATGGTTACATAATAATACAGTTACAGTGAAGTGAGGTATGGGCTGCACAATAATGcctaaaatattaatttgttacAATTATTTAAGCAGTTTAGGAACAAAATAGCTTTACTGCAACGTTTTGAATAAtcagaaaacaaattaattatctGTCGCATTGCACTTTATAAGCCTTTATATATTCCtacagatgcaaaaaaaaaagaagaagaaaaaaatgcaattatgagcaaatgaataatttttgaACAATGATCTATCCTgatccaaatgaataaataaatacgtaaATAAATAGGTCACTGGAAAGATGTGAATTAATGCATCTAAAACTTATACTTAATGTTAACCAATTATCTTTAGCTATACTGACCAACATTGGagttaattatgtttaattaaatgagGAATCTGAAAGTCTTGATCATTTTCTGTGCAGCCATAACGTTAATGCcgtaatataataacattacGCAAAAgtgctttcttttcttcatcAGATAGTGAAGTCATTCGTAAAAAGACTTAAAAGCTTACCTGCAGGATTGGCAGAGTGCTATTAGTTAGAAACTATGATACAGTGAAAAACATCTAGATTACGTTAATTTAAAAGACGTTTAGGTGATcgtataaatacaaaaaatacacaaaaataagcCATTAAAGCATATATATGTGAGGAGCTTGTTACGTAATGCATCAATCAGTAATAACTGACATCTGATTGGAGCTAACCAGCAATTTTAGCTAAGCTCACTAATAATAAGAACTATATTATGTTGACGTAAATGCACTTATCTGTTCAGCCCTAGACATTAGAGTTTACCTACAGGATCAGAAATGTGTTATTAGATACAGATTAGGATTCAgtgcaaaataaagaaattatgtttatttaagacAGGTTGATCTGTTACAGTGAGATCTCGTATAATACAATGTTTGGCTTCTGCACTTATGAGCTGAAATAATTtctggaaaagaaaagaggTCTCCAAATTAAGAGATGGGTTTGTGACACGCTTTCGCCGATGTGTTGACTGAGTGATgggattgtgtgtgttgtgatcaGAGCTGGAGTTATCAAGCTTTATCTGTGATTATAATACATCTAACTATGTGTAGGTGTATAAGTCTGAATGCAGTCCTCACTGGCCTCTTCAGGTCACATTTTAGTTCTGTCACAGCTTTTGCACGCTTGTCTGTTGTTACCTGTCTCAGGTGTGTTAGGATCTGGACAGAGCAAAAACATGGATGTTATTCAGACTGGCCTGGCAAAATTTGTTTTATCTCAATTTTTAGACCTTAGAATTATAAGTTTCTGACAATTTTTCCTTCAAAAATGAGTTAATATCTTATTAAATAgtcatttaatatattatttacattctgGTAAATATTTGCAAGTGGCTTATTTGTTGAATTCCtgattctcaattctgattggtcgattgattgattgattgattgattgattttaacattttaacattagtgcaggctgtaattcaaatca

Function

symbol description
abtb1 Orthologous to human ABTB1 (ankyrin repeat and BTB domain containing 1).

NR:

description
ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X2

GO: NA

KEGG:

id description
K10520 ABTB1, BPOZ; ankyrin repeat and BTB/POZ domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928566.2 True 3415 mRNA 0.43 12 4119035 4131370

Neighbor

gene id symbol gene type direction distance location
smim24 NA coding upstream 297944 3818404 ~ 3821091 (+)
dohh dohh,LOC106584359,LOC107745802 coding upstream 311551 3802656 ~ 3807484 (+)
haus5 haus5 coding upstream 327414 3778297 ~ 3791621 (+)
mob3a LOC108264984,LOC108439653,LOC100699828,LOC102783145,LOC107585875,LOC104921817,LOC103368804,LOC101067073,LOC107731185 coding upstream 447346 3659850 ~ 3671689 (+)
LOC113534995 LOC108264986,LOC108439652,LOC107695253,LOC107585931,LOC107548917,LOC107676994 coding upstream 460991 3634700 ~ 3658044 (+)
slc6a6a slc6a6a,LOC108264963,LOC108441104,LOC107696920,LOC107552205,LOC107714566 coding downstream 21667 4153037 ~ 4177850 (+)
pcsk1nl LOC108265073 coding downstream 102624 4233994 ~ 4247657 (+)
LOC113535168 LOC108265824,LOC108440552 coding downstream 245264 4376634 ~ 4388950 (+)
fgd1 fgd1,LOC108266043,LOC107552218 coding downstream 262978 4394348 ~ 4445422 (+)
tfe3a LOC108265526,LOC108279478,LOC108440537 coding downstream 319206 4450576 ~ 4479625 (+)
G126525 NA non-coding upstream 57969 4060279 ~ 4061066 (+)
G126454 NA non-coding upstream 145751 3970379 ~ 3973284 (+)
G126493 NA non-coding upstream 154939 3907079 ~ 3964096 (+)
G126461 NA non-coding upstream 275298 3802544 ~ 3843737 (+)
G126453 NA non-coding upstream 280400 3833678 ~ 3838635 (+)
G126591 NA non-coding downstream 122374 4253744 ~ 4254762 (+)
G126628 mecp2,LOC107735123,LOC106572920 non-coding downstream 186840 4318210 ~ 4358056 (+)
LOC113535080 NA non-coding downstream 354901 4486271 ~ 4494004 (+)
G127105 NA non-coding downstream 641424 4772794 ~ 4795256 (+)
G127147 abt1 non-coding downstream 710056 4841426 ~ 4842134 (+)
si:ch73-233m11.2 LOC108265197 other upstream 14216 4095269 ~ 4104819 (+)
wdr13 wdr13 other upstream 341545 3750504 ~ 3777490 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other upstream 417332 3684893 ~ 3701703 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other upstream 581746 3445015 ~ 3537289 (+)
znf692 znf692 other upstream 771288 3336380 ~ 3347747 (+)
ssuh2rs1 LOC108264961 other downstream 89280 4220650 ~ 4278077 (+)
plxnb3 plxnb3,LOC108265307,LOC107584917,LOC107601751 other downstream 494715 4626085 ~ 4727880 (+)
srpk3 srpk3,LOC103374712,LOC103366878,LOC107101350,LOC100702848 other downstream 611869 4743239 ~ 4766376 (+)
tbc1d22b tbc1d22b,LOC108438566,LOC107674367,LOC107734531,LOC107653399 other downstream 1715777 5847147 ~ 5907946 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other downstream 2625393 6756763 ~ 6811646 (+)

Expression


Co-expression Network