fgd1 (fgd1,LOC108266043,LOC107552218)


Basic Information

Item Value
gene id fgd1
gene name fgd1,LOC108266043,LOC107552218
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 4394348 ~ 4445422 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928602.2
GGAGCAGGAGGGAAAAGGATCCAGAAGGAAGGAGCTGGGAACTCGGAGGCCACTTTGGAGTCGGGATTGGAATCGGGATGTGACTGTACACACACCGGACAAACCGGAGGACACCGCGAGCCACAAAAAAAGCCCCTGGATTTTAATCCGCGCCTCGCGAGCTTCACGGCGTCTTTGTGGCAGTAAAGCGCGTGCAGGAGACGCGCATCATGCGGGTTGGAGAGCTTTAGAGCTTTCAGAGCTTGCTCAGAGCTGAGTGTGCACATTTCCCGGAGAGAGCAGAGCCGACCGGATCCTATGCGCTGTGTGGAGACGTTAATAACGGCCACACGAGCCGGAGCGAGCCGCCAACTTCTCCACAAACGTCCGTGTGAACGGGAAGCAACTTTTGACATGGCcattgttctgtttttggcACTTGGTAGTCGGTGATATATTACTCCAGGCCTGCATTTTGAACAAAGACGTGGCAGGAAGATGGATTAAGAaacttttctttattgtttgcGGTAACTGttccatgtctttttttttctttagtagtTTTCTTTGACACGATGGCAACAAAAAGGAGTGTTGTAGTCTTGTGTTATTGTCAGAGAAGATCAAACGTGTAGTGTAACGACTCTTAttgaacaaaaaacacacacacacacacacacgcacgcgcgcgctacttagtttttaaaaaatgcgcATTTTATTTTGGGGTAtggttattttcctaaaataacTAATCAGGCAGCACTAATCCCAGgctgtgtgtatggtgtatggcTTGAGTACAGCACCGGGACTGAACCGCTCTCTTTGATGGAGTTTTACGCCGTCCAGAGGGCCTTGGATGGGATTTTCACTCCGCAGCTGGATGGCACGCCGGCGGATCGCTACCGTTTGACCGGGACACCGTTCAGCTTCCAGATCGCGACCGAGCGACCGGGACGATCCGGTCTGGACGCGAAGCTTCCAGGAAGGGCACCTGGAGGCAGAAGCGCACCTCTTTGAGGACTGtgattcttttttgtttgtttgtttgagtgtgtgtggattgtATCACCTATTGGAAGTGTAAAACCCGTGTCCCTGCCCTGCAAACGTGATTGCAGGCAGGCATGCAGCTGAACCGGCCCCGGAGCGCGCTGATCGGCTTCAgcccgccgccgccgccgccgccgccgtcCGACCCGCACCCGACCTTCTCCAGCCAGTTCAAGACGATGCGCTTTTCCTACCACCTCAGCCCGCAGCCCGGATCCCGCAGAACCGGCCCGTCTGCGTCCAGTCCTCGGCTCCTGACTAAGAGTCTGTCTCTGGAGCCAGGCCCGTGTCCAGGAGCCCATGAGGCCCCTCAGCGTCTCTGTTCGGACCCCGGGCCCCTGGGACTGCAGCATTGCAATGGCACAAGCGAGAGCGAGCCTCAAAACGCCCCACCTTTGCCCCCAAAAACACGGCCGCCATTACCCGGTCCCAAACCACAAGTGCCCCCGAAACCACCACATCTCCAACAACAGAGCGGCCGCCGACCCCGGCCCCCGGACAAACCCCTGCCCCCGCCTCCATCCCGCCCACTCCCAGCAGACCCTCGCCAATCACGGACAGGCCTGCCGCGGGCCGAGGGAAGCTCCTCCCCGACGTGTGTCCTGTCACTCATCGAGAGAtttgagaggGAGCAAATCATCATGGTGCCTGATATCACAGGGGGAGTGATGTGTATGCCGAGGGTACCTGAACCACAGCCCACTACAGACTCTATTTTACCCTGCACTTCCCTCAACGAGCCCGTGGAGCCTCCGTCTGTCGAGAAGGAGCAGGAAAAAGAAacggaggaagaggaggaaaaagaggaggaagTCAAAGAGGAAGGGGAGGTACAGGAGGACATAGAGGAGGATGATAATGAGCTGGGAGCCTCCTGCTCGGAAAAGCGACTCTCCACAGAGTCTGGCTACGGCGCCTCCGATAAACTCCTGGACGCAATGGAGATAAGAGACCTCGGCCAATCGGAAATCCCCCCTGACCGCCTGTCCCTTCCTCCGCAGCAAACAGACACTAAACTAGCTAATCGGGACAGCGGCATTGACAGCATCAGCTCTCCGTCTCACAGTGAGGAACTGTGCTTCGCCAGCGATGACAGAGAGGTGTGCATGTCTCTTCCTcgcctctcctcctcttcctcatgcGGTTGTGTGGAAGGACCAGCAGGAGAAGGAGCTGTCGCTGCCGTGGAGGAAGGAACGAGGGACTCAGAGGGAGACAGTGATTTGGAAGAAGGGAGCGGGGATGAGAGCGAGAACGCCATGGCCATAGGGCCTCAGCCcaaagcagagagacaggactCTGTTgagCTATCAGTGCAGCAGCGTGTGTTTAACATTGCCAACGAGCTCCTCCACACGGAGAAGGCGTATGTGTCCAGGCTTCACCTCCTGGACCAGGTGTTCTGCGGGCGGCTGATGGAGGAGGCGCGAGCACGAGGCTCTTTCCCCTGCGAGGTGGTGATGGGCATCTTTTCCAACATCTGCTCTATCTACTGCTTCCATCAACAGTTCCTGCTGCCAGCTCTGGAGAAACGCATGGAGGAATGGGACGTGAACCCGCGGATCGGGGACATCCTCCAGAAACTGGCTCCCTTCCTGAAGATGTACGGCGAATATGTGAAGAACTTTGACACGGCCATGGAGCTGGTGAACACCTGGATGGAGCGCTCGTCACAGTTCAAAGCCATCATTCACGACATTCAGaaagAGGAGATGTGCGGAAACCTCACCCTACAGCACCACATGTTAGAGCCCGTACAGCGGATCCCTCGCTACGAGCTCCTTCTGAAGGACTACCTGCACCGGCTGCCCGAGGATGCTGAGGACTTTAAAGATGCACagaAATCTTTAGAGCTGATTGCTACAGCAGCTGAGCATTCCAACGCAGCCATTAGGAAAATGGAGCGCATGAGGAAGTTGTTGAAAGTGTATGAGCTGCTCGGGGGAGAAGAGGACATTGTGAACCCGACTAATGAGCTCATTAAGGAGGGACACATCCTCAAACTGTCGGCCAAGAACGGAACCTCGCAGGACAGATACCTCATTCTGTTCAACGACCGGTTGCTGTATTGTGTCCCTAAACTCAGACTGATCGGACAGAAATTTGGAGTGCGGGCACGGATTGATGTAGACGGCATGGAGCTGAAAGAGACGAGCAGTATGAACATGCCACGGACGTTTCTGGTGTCGGGAAAACAGCGATCTCTCGAATTACAGGCCAGgactgaagaagaaaagaaagactggATTCAGGCGATCCAGGCCACTATCCAAAGGCATGAGCAGAGCGTGGAGACGTTCAGGATGTTGAACTGTTCGGTGCGTGAGGATGATTGCACGCCCCCCAACTCTCCGAACTGCACAGAGCTGGGAAAGCGTGCTCCCACTCCGATCCGGGAAAAAGAAGTGACGCTGTGTATGAAGTGCCAGGAGCCGTTCAACTCCATTACCAAGAGACGCCACCACTGCAAAGCATGTGGACATGTGGTATGTGGAAAATGCTCGGAATTCCGTGCCCGGTTGTTGTATGATAACAATCGAGCAAATCGTGTGTGTATAGACTGCTATACTACGCTGGTGGGAGTCCCGCCCTCTCCGGCCAGCTTGACCAATAGTACTCAGAGAAGACGCTCCATTTTAGAGAAACAGGCCTCTGTGGCGGCGGAGAACAGTGTCCTGTGCAGCTTCCTGCACCACATGGAGAAGGGCAGTGGCCGTGGCTGGCAGAAAGCCTGGTTTGTCATCCCTGAAAACGAACCTCTGGTGCTTTACATTTATGGTGCTCCACAGGATGTGAAGGCCCAGCGCAGCATCCCTCTCATTGGCTTCGAAGTCTCCCTCCCCGAGTCATGTGACCGTCTGGAGCGGCGCTACGCCTTCAAAATGAGCCAGAGTCACCTGACTGTTTACTTCAGCGCCGAGGGGGAGGAGCTCCAACGCCGCTGGATGGAGGTGCTCTCCAGAGCCGGGAGAGGGGAGGAGCTACAGGTGCACGGTCCAATCTCGGAGGCTCTGGAAGAAGAAGCGGAGGAACCGAGCTCTCTAGGAGAAAGCACATGATTGGTTTAtgaaatctctctttttttgcacACATAAACTGTACAAATGTGACAAGAAGGACAGTTATCtgccataaatacacacacctagacatgcacacataaacacacacagacacacacgcatacacacacagacacaccttcACAAGTTTTACACAAACCTGTTCTAATTGTCAGTCGTAAGTTGCATGAAATATCTACAGGTATGTTTCTCTGTGTATTGCTCATCCTCTGTGAGTGTGATCGCCCTGCACATGGTGCGCCAAACACCGTGTCAGTATAGTCACCCTGCTTTATATCGTCTCTCCTCCTCCGCAGCTGAAGAGTTCTCTGTTAGATAGATCTGCTCTTTTTTCCAGACCATTGCTGTGCTGTTTTAAATGACTGCCGGCGTTTCAGTGCTTGCAAACTCGTTTTGGGAGAAGACGATGTGATCAGGCGACTAAGTACAAAGTAACAAACATGAACAGAGTCAGAATAGAGAAGGCCGTAGTGCGATGGACAACATTTCCTCTGCAAGGTTTACAGTTTTGTAAAGAGCAATCCAGTGGTGCAGATTAACAGGAATCATAGCTAAAATGAAAGAATTGTCTCGAAGGTGTATCATTTTCTTCTTACTAAGACTATAGTGTACAGGGTCTCCcataaaaatgccaaaaatgaaatctttttttatagaACTTGCCCACCAGTTTTCTCAATACACAACTTCCTAtgagaatttaaaaacatacattaaCCCTGTGATGCTGAACTTAAGGGACACCTTGTACagcaatatataatatatatgcagtatatatgtTACGCTTTATATGGGTCAATGGGTTTGCACTGTCATACTGTATAACAacagtattttatattaaaataaaacattttttaattggCTCAAAGTATACAgttctatatactgtatgtctataaatggaaaacattaaattaaatatatcacaagaacatcatgcagataaacagagagaaaagtaTAGCTGCAAAATTTATAGACTTCATATAGAATGTTTATTTACTGGTATATAATTCTTACAGTTtgatttttgtacattttatccaagTAGCAGAACCAAAAAGGATTTATTTGTCTGTTATCGACATTGCAATGGGCTGAATTTATGTTCATtccaaattaaaatgtgtttctgattttaaaaaatttaaaaattaaaaaacaaaatttaaagaaaaaatggaaatgtatagGGAACCTCTCAGTTCCAAATATAATGGCAagacatttcttcttcttcttcttcttcttcttcttcttccctaTTTTATTCACTTAGacccatatacagtac
>XM_026928603.2
TGGGGGCAGCCGGAAAGGGGTGGGGGGAAAGTACGGCGATCAAATCTGCCTTTTATTTCGTTTGTTTTGCGTTTTTTTTCAAGTGTCATCGCTGTAAAACGATTTTATAGCTCGTGCATTGGTTGTAATTCAGCCCTGATCGCTTGTAAAAGGCTTTTTATTATGAGAAGAAATGTGATTTGGTGCTCCTGAAGATGGCCGGTTGCAGCGCGAGGGCTTTTCTCACCGGGTGCATGTTAACCATTTCTCTGCGCGCTGTCTCACCTCTTTTGCGCTGATTtgtcatttcattcattttcccgTCGTTTAAGCGTGTGTGGGGAAGACAGGGCTCCCCCCTGCTGTATTTTAATGACCGGTTTCGTGCTTTGCTGCGCGATGTACATGGAGAAAACCAGTGTGCTCCGGGGCCCGTCTGCGTCCAGTCCTCGGCTCCTGACTAAGAGTCTGTCTCTGGAGCCAGGCCCGTGTCCAGGAGCCCATGAGGCCCCTCAGCGTCTCTGTTCGGACCCCGGGCCCCTGGGACTGCAGCATTGCAATGGCACAAGCGAGAGCGAGCCTCAAAACGCCCCACCTTTGCCCCCAAAAACACGGCCGCCATTACCCGGTCCCAAACCACAAGTGCCCCCGAAACCACCACATCTCCAACAACAGAGCGGCCGCCGACCCCGGCCCCCGGACAAACCCCTGCCCCCGCCTCCATCCCGCCCACTCCCAGCAGACCCTCGCCAATCACGGACAGGCCTGCCGCGGGCCGAGGGAAGCTCCTCCCCGACGTGTGTCCTGTCACTCATCGAGAGAtttgagaggGAGCAAATCATCATGGTGCCTGATATCACAGGGGGAGTGATGTGTATGCCGAGGGTACCTGAACCACAGCCCACTACAGACTCTATTTTACCCTGCACTTCCCTCAACGAGCCCGTGGAGCCTCCGTCTGTCGAGAAGGAGCAGGAAAAAGAAacggaggaagaggaggaaaaagaggaggaagTCAAAGAGGAAGGGGAGGTACAGGAGGACATAGAGGAGGATGATAATGAGCTGGGAGCCTCCTGCTCGGAAAAGCGACTCTCCACAGAGTCTGGCTACGGCGCCTCCGATAAACTCCTGGACGCAATGGAGATAAGAGACCTCGGCCAATCGGAAATCCCCCCTGACCGCCTGTCCCTTCCTCCGCAGCAAACAGACACTAAACTAGCTAATCGGGACAGCGGCATTGACAGCATCAGCTCTCCGTCTCACAGTGAGGAACTGTGCTTCGCCAGCGATGACAGAGAGGTGTGCATGTCTCTTCCTcgcctctcctcctcttcctcatgcGGTTGTGTGGAAGGACCAGCAGGAGAAGGAGCTGTCGCTGCCGTGGAGGAAGGAACGAGGGACTCAGAGGGAGACAGTGATTTGGAAGAAGGGAGCGGGGATGAGAGCGAGAACGCCATGGCCATAGGGCCTCAGCCcaaagcagagagacaggactCTGTTgagCTATCAGTGCAGCAGCGTGTGTTTAACATTGCCAACGAGCTCCTCCACACGGAGAAGGCGTATGTGTCCAGGCTTCACCTCCTGGACCAGGTGTTCTGCGGGCGGCTGATGGAGGAGGCGCGAGCACGAGGCTCTTTCCCCTGCGAGGTGGTGATGGGCATCTTTTCCAACATCTGCTCTATCTACTGCTTCCATCAACAGTTCCTGCTGCCAGCTCTGGAGAAACGCATGGAGGAATGGGACGTGAACCCGCGGATCGGGGACATCCTCCAGAAACTGGCTCCCTTCCTGAAGATGTACGGCGAATATGTGAAGAACTTTGACACGGCCATGGAGCTGGTGAACACCTGGATGGAGCGCTCGTCACAGTTCAAAGCCATCATTCACGACATTCAGaaagAGGAGATGTGCGGAAACCTCACCCTACAGCACCACATGTTAGAGCCCGTACAGCGGATCCCTCGCTACGAGCTCCTTCTGAAGGACTACCTGCACCGGCTGCCCGAGGATGCTGAGGACTTTAAAGATGCACagaAATCTTTAGAGCTGATTGCTACAGCAGCTGAGCATTCCAACGCAGCCATTAGGAAAATGGAGCGCATGAGGAAGTTGTTGAAAGTGTATGAGCTGCTCGGGGGAGAAGAGGACATTGTGAACCCGACTAATGAGCTCATTAAGGAGGGACACATCCTCAAACTGTCGGCCAAGAACGGAACCTCGCAGGACAGATACCTCATTCTGTTCAACGACCGGTTGCTGTATTGTGTCCCTAAACTCAGACTGATCGGACAGAAATTTGGAGTGCGGGCACGGATTGATGTAGACGGCATGGAGCTGAAAGAGACGAGCAGTATGAACATGCCACGGACGTTTCTGGTGTCGGGAAAACAGCGATCTCTCGAATTACAGGCCAGgactgaagaagaaaagaaagactggATTCAGGCGATCCAGGCCACTATCCAAAGGCATGAGCAGAGCGTGGAGACGTTCAGGATGTTGAACTGTTCGGTGCGTGAGGATGATTGCACGCCCCCCAACTCTCCGAACTGCACAGAGCTGGGAAAGCGTGCTCCCACTCCGATCCGGGAAAAAGAAGTGACGCTGTGTATGAAGTGCCAGGAGCCGTTCAACTCCATTACCAAGAGACGCCACCACTGCAAAGCATGTGGACATGTGGTATGTGGAAAATGCTCGGAATTCCGTGCCCGGTTGTTGTATGATAACAATCGAGCAAATCGTGTGTGTATAGACTGCTATACTACGCTGGTGGGAGTCCCGCCCTCTCCGGCCAGCTTGACCAATAGTACTCAGAGAAGACGCTCCATTTTAGAGAAACAGGCCTCTGTGGCGGCGGAGAACAGTGTCCTGTGCAGCTTCCTGCACCACATGGAGAAGGGCAGTGGCCGTGGCTGGCAGAAAGCCTGGTTTGTCATCCCTGAAAACGAACCTCTGGTGCTTTACATTTATGGTGCTCCACAGGATGTGAAGGCCCAGCGCAGCATCCCTCTCATTGGCTTCGAAGTCTCCCTCCCCGAGTCATGTGACCGTCTGGAGCGGCGCTACGCCTTCAAAATGAGCCAGAGTCACCTGACTGTTTACTTCAGCGCCGAGGGGGAGGAGCTCCAACGCCGCTGGATGGAGGTGCTCTCCAGAGCCGGGAGAGGGGAGGAGCTACAGGTGCACGGTCCAATCTCGGAGGCTCTGGAAGAAGAAGCGGAGGAACCGAGCTCTCTAGGAGAAAGCACATGA

Function

symbol description
fgd1 Predicted to enable guanyl-nucleotide exchange factor activity and metal ion binding activity. Predicted to be involved in cytoskeleton organization and filopodium assembly. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in X-linked Aarskog syndrome and non-syndromic X-linked intellectual disability. Orthologous to human FGD1 (FYVE, RhoGEF and PH domain containing 1).

NR:

description
PREDICTED: FYVE, RhoGEF and PH domain-containing protein 1-like

GO: NA

KEGG:

id description
K05720 FGD1; FYVE, RhoGEF and PH domain containing 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928602.2 True 5421 mRNA 0.50 17 4394348 4445422
XM_026928603.2 False 3240 mRNA 0.55 17 4417421 4444098

Neighbor

gene id symbol gene type direction distance location
LOC113535168 LOC108265824,LOC108440552 coding upstream 5398 4376634 ~ 4388950 (+)
pcsk1nl LOC108265073 coding upstream 146691 4233994 ~ 4247657 (+)
slc6a6a slc6a6a,LOC108264963,LOC108441104,LOC107696920,LOC107552205,LOC107714566 coding upstream 216498 4153037 ~ 4177850 (+)
abtb1 abtb1,LOC107674366,LOC107696919 coding upstream 262978 4119035 ~ 4131370 (+)
smim24 NA coding upstream 573257 3818404 ~ 3821091 (+)
tfe3a LOC108265526,LOC108279478,LOC108440537 coding downstream 5154 4450576 ~ 4479625 (+)
ntpcr ntpcr coding downstream 55363 4500785 ~ 4504839 (+)
cxxc1a cxxc1a,cxxc1,LOC108265945,LOC107727409,LOC107674299,LOC108440538,LOC107743112,LOC107701818 coding downstream 59991 4505413 ~ 4512377 (+)
mbd1a LOC108265790 coding downstream 67133 4512555 ~ 4540256 (+)
si:ch211-169p10.1 LOC108265917 coding downstream 98118 4543540 ~ 4603365 (+)
G126628 mecp2,LOC107735123,LOC106572920 non-coding upstream 36292 4318210 ~ 4358056 (+)
G126591 NA non-coding upstream 139586 4253744 ~ 4254762 (+)
G126549 LOC108265196 non-coding upstream 209268 4111574 ~ 4185080 (+)
G126529 NA non-coding upstream 261679 4069691 ~ 4132669 (+)
G126525 NA non-coding upstream 333282 4060279 ~ 4061066 (+)
LOC113535080 NA non-coding downstream 40849 4486271 ~ 4494004 (+)
G127105 NA non-coding downstream 327372 4772794 ~ 4795256 (+)
G127147 abt1 non-coding downstream 396004 4841426 ~ 4842134 (+)
G127155 NA non-coding downstream 439598 4885020 ~ 4939386 (+)
LOC117597829 NA non-coding downstream 605809 5051231 ~ 5053827 (+)
ssuh2rs1 LOC108264961 other upstream 116271 4220650 ~ 4278077 (+)
si:ch73-233m11.2 LOC108265197 other upstream 289529 4095269 ~ 4104819 (+)
wdr13 wdr13 other upstream 616858 3750504 ~ 3777490 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other upstream 692645 3684893 ~ 3701703 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other upstream 857059 3445015 ~ 3537289 (+)
plxnb3 plxnb3,LOC108265307,LOC107584917,LOC107601751 other downstream 180663 4626085 ~ 4727880 (+)
srpk3 srpk3,LOC103374712,LOC103366878,LOC107101350,LOC100702848 other downstream 297817 4743239 ~ 4766376 (+)
tbc1d22b tbc1d22b,LOC108438566,LOC107674367,LOC107734531,LOC107653399 other downstream 1401725 5847147 ~ 5907946 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other downstream 2311341 6756763 ~ 6811646 (+)
mrps36 LOC108265361 other downstream 2978579 7424001 ~ 7430997 (+)

Expression


Co-expression Network