sec22bb (sec22b,sec22bb,LOC108265393,LOC101168279,LOC100705437,LOC103354218,LOC108439390)


Basic Information

Item Value
gene id sec22bb
gene name sec22b,sec22bb,LOC108265393,LOC101168279,LOC100705437,LOC103354218,LOC108439390
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2920866 ~ 2926332 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928605.2
TAGGAAAAGAGGGCTGCGTAATCTAGATAGCCGTCATCACATCTGCAGAGTGAAGCGGCTCGGATCGGTgcagaaattacagaaaaatggtGTTGTTTACGATGATCGCGCGGCTGGCGGATGGACTTCCTCTGGCTGCGTCCATGCAAGAAGATGAACAgGCAAGTGAGAAGatGGGTCGAGACATGCAGCAGTATCAGAGCCAGGCCAAACAGCTGTTTCGGAAGCTTAATGAACAAAGTCCAACACGCTGCACGCTGGAGGCAGGGTCCATGACCTTCCAttaCCTGATAGAGAAAGGGGTGTGTTACCTGGTGCTCTGTGAGGCCGTGTTCCCCAAGAAACTCGCCTTCGCCTACTTAGAAGATCTCCAAGCCGAGTTCCACGAGCAGTACGGGAAGAAAGTTCCCACCGTGTCCAGACCGTACTCCTTCATCGAGTTCGACACGTACATCCAGAAAACGAAGAAGTCTTACATCGACAGCAGAGCTCGCAGGAACCTGGGCAACATTAACACGGAGCTGCAGGACGTCCAGAGGATCATGGTGGCCAACATTGAGGAGGTGCTGCAGCGAGGAGAAGCCTTATCtgCTTTGGACTCGAAGGCCAGCAACCTGTCCAGCTTGTCCAAGAAATACCGCAGCGACGCCAAATACCTGAACACGCGCTCCACCTACGCCAAGCTGGCCGCCGGTGGCGTCTTCTTCATCATGCTCATCGTCTACGTCCGCTTCTGGTGGCTgtgaggacgaggaggagggaggagacgTGACGGAGGCTTGGACGTCGCGCCGAAGGCGGCGGAAACGAGACGCCGTCACTCTCCCTTTCCTCAGAGACTGATGGTTGCGGCACTTTCTCTCCCCTGGCAGTTCGCAGACTGAGCTACGAGTCTATGATTGTTCAtatgttgtatgttttattaacCGACGCAGAAggatgagtgagtgactgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagatggTGATGTGAATAAGGGCGAGGGCGAGAGAGAGCTTTTCCCGAGGAATCCGCCCACAAAGAGCGCCACCAAGTGGACAATTTGCCTTATTTCACAATCCGTCTGAGAGAATCAGAAAGACAAGAAGAcgagtcactcactcactcactcactcattcgctcactcactcactcattcactcactcattcattcattcattcgcgCTCTGAGTGGACGGATTGCAGGTTTTTCCCCAGGTTTACAGGCCATGTGTTAGGCAGTGAAGTACACAGCTGTGAAAACCACCACagtgaggaataaaaaagaggaaaaaagactcTCTGGTGTACTTTTGCCTTTCAGTTGACAATAAAGCGGTTCAGTGTCTGATGCCTGTAGTTTCGGTGTCTAATCTAATAAACAGCTGATGTTTc
>XM_026928606.2
AGGAAAAGAGGGCTGCGTAATCTAGATAGCCGTCATCACATCTGCAGAGTGAAGCGGCTCGGATCGGTgcagaaattacagaaaaatggtGTTGTTTACGATGATCGCGCGGCTGGCGGATGGACTTCCTCTGGCTGCGTCCATGCAAGAAGATGAACAgatGGGTCGAGACATGCAGCAGTATCAGAGCCAGGCCAAACAGCTGTTTCGGAAGCTTAATGAACAAAGTCCAACACGCTGCACGCTGGAGGCAGGGTCCATGACCTTCCAttaCCTGATAGAGAAAGGGGTGTGTTACCTGGTGCTCTGTGAGGCCGTGTTCCCCAAGAAACTCGCCTTCGCCTACTTAGAAGATCTCCAAGCCGAGTTCCACGAGCAGTACGGGAAGAAAGTTCCCACCGTGTCCAGACCGTACTCCTTCATCGAGTTCGACACGTACATCCAGAAAACGAAGAAGTCTTACATCGACAGCAGAGCTCGCAGGAACCTGGGCAACATTAACACGGAGCTGCAGGACGTCCAGAGGATCATGGTGGCCAACATTGAGGAGGTGCTGCAGCGAGGAGAAGCCTTATCtgCTTTGGACTCGAAGGCCAGCAACCTGTCCAGCTTGTCCAAGAAATACCGCAGCGACGCCAAATACCTGAACACGCGCTCCACCTACGCCAAGCTGGCCGCCGGTGGCGTCTTCTTCATCATGCTCATCGTCTACGTCCGCTTCTGGTGGCTgtgaggacgaggaggagggaggagacgTGACGGAGGCTTGGACGTCGCGCCGAAGGCGGCGGAAACGAGACGCCGTCACTCTCCCTTTCCTCAGAGACTGATGGTTGCGGCACTTTCTCTCCCCTGGCAGTTCGCAGACTGAGCTACGAGTCTATGATTGTTCAtatgttgtatgttttattaacCGACGCAGAAggatgagtgagtgactgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagatggTGATGTGAATAAGGGCGAGGGCGAGAGAGAGCTTTTCCCGAGGAATCCGCCCACAAAGAGCGCCACCAAGTGGACAATTTGCCTTATTTCACAATCCGTCTGAGAGAATCAGAAAGACAAGAAGAcgagtcactcactcactcactcactcattcgctcactcactcactcattcactcactcattcattcattcattcgcgCTCTGAGTGGACGGATTGCAGGTTTTTCCCCAGGTTTACAGGCCATGTGTTAGGCAGTGAAGTACACAGCTGTGAAAACCACCACagtgaggaataaaaaagaggaaaaaagactcTCTGGTGTACTTTTGCCTTTCAGTTGACAATAAAGCGGTTCAGTGTCTGATGCCTGTAGTTTCGGTGTCTAATCTAATAAACAGCTGATGTTTc

Function

symbol description
sec22bb Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum; and vesicle fusion with Golgi apparatus. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in several cellular components, including Golgi apparatus; endoplasmic reticulum-Golgi intermediate compartment membrane; and melanosome. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in bounding membrane of organelle; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human SEC22B (SEC22 homolog B, vesicle trafficking protein).
sec22b Predicted to enable SNAP receptor activity. Involved in negative regulation of autophagosome assembly and positive regulation of protein catabolic process. Located in ER to Golgi transport vesicle membrane and endoplasmic reticulum-Golgi intermediate compartment.

NR:

description
vesicle-trafficking protein SEC22b-B

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048280 vesicle fusion with Golgi apparatus biological_process
GO:0015031 protein transport biological_process
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
K08517 SEC22; vesicle transport protein SEC22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928605.2 True 1437 mRNA 0.51 6 2920866 2926332
XM_026928606.2 False 1424 mRNA 0.52 5 2920867 2926332

Neighbor

gene id symbol gene type direction distance location
LOC113535040 NA coding upstream 10506 2906725 ~ 2910360 (+)
npl npl coding upstream 14320 2897299 ~ 2906546 (+)
ptgesl ptges2,LOC103370734,LOC104955211 coding upstream 216803 2694963 ~ 2704063 (+)
LOC117597819 NA coding upstream 278260 2640711 ~ 2642606 (+)
mpnd mpnd,LOC106591182,LOC107750615 coding upstream 501911 2409325 ~ 2418955 (+)
notch2 LOC108265554 coding downstream 25089 2951421 ~ 3031725 (+)
slc35a3a slc35a3,LOC108439387,LOC100705874,LOC102790943,LOC101471768 coding downstream 109897 3036229 ~ 3055064 (+)
foxe3 LOC108265253 coding downstream 150788 3077120 ~ 3087181 (+)
foxd2 foxd1,LOC108265081,LOC103022344 coding downstream 163249 3089581 ~ 3098224 (+)
fcho1 fcho1,LOC108264992,LOC107751067,LOC103395380,LOC100695123 coding downstream 423480 3349812 ~ 3399427 (+)
G125593 NA non-coding upstream 65091 2854757 ~ 2855775 (+)
G125484 rgl1,LOC107717560 non-coding upstream 175303 2705841 ~ 2745563 (+)
G125626 NA non-coding downstream 67518 2993850 ~ 3227664 (+)
G126401 NA non-coding downstream 642657 3568989 ~ 3575303 (+)
G126408 NA non-coding downstream 703470 3629802 ~ 3631632 (+)
LOC117597831 NA non-coding downstream 793010 3719342 ~ 3735098 (+)
G126461 NA non-coding downstream 876212 3802544 ~ 3843737 (+)
LOC113535041 edem3 other upstream 2635 2845709 ~ 2918231 (+)
alkal1 LOC108265007 other upstream 688726 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 933294 1877028 ~ 1987572 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 1114076 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 1574281 1344336 ~ 1346585 (+)
znf692 znf692 other downstream 410048 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 518683 3445015 ~ 3537289 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 758561 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 824172 3750504 ~ 3777490 (+)
si:ch73-233m11.2 LOC108265197 other downstream 1168937 4095269 ~ 4104819 (+)

Expression


Co-expression Network