LOC113536035 (LOC108265641)


Basic Information

Item Value
gene id LOC113536035
gene name LOC108265641
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9574382 ~ 9582740 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929718.2
GATGCTTTGGGAGGTGCTGCCCGCCTCCTTGGCACAGATTGGTTTGGTTAATACAGCTGGACTGCGTTCCTGTAATCAGCTTATAGGAGACACTGTTTTGAGCAGAACATCAGTTGTAGCGACAGCTACGAGAACGTAAAGAAACTTTAACCCTGAGTGTTGCTTTAAAAACTGCTTAGACCGTCTTTAATAATATGTCAAAAAATCTGTGCGCTTTGGAATTTTGGACGCCCTGGTGCTCGGGAACGCGGCTGCGCGCGAGCTCGTGATGCTCCATGCGCGCGCAGTCAGCTCGCTGTCTCCAGTCCTGTGCACTTCAGACAAGATTATGTTGAGCAGAGGTTTGGGTTCTCTGCCTCGTTTCTAGAATACTGTGGACAGCTTTATGTAGAGCGTCTTTTCCATAATGTCGAGGAGGAAAGTTCGTCTCGCGCGCTCTGAGCGTACAGTGAGCGAGGACTCGGACATAGACAGCCTGCTGGAGAGCCTGTCTCCTGATGAGGTGGAGGAGCTGGAGAGGGAGCTGATTATCATCGACCCGGATCCCAGTGTGCCGGTGGGGCTCAGGCAGAGAAACCAGACCGAGAAACAGCCGACACGTGGCTACGACCGTGAAGCCATGCTGGACTACTGCGAGCGAGAGACCAAGAAGCTCATAGAGAGGGAGCTGTCCTTTGAGGGGGAGGCCAAAGGTGAAGGCCGTAGACGGGACCGGCTAAGGAGAACAAGAAGCAAAGAACATCGGAGCTTTTCTAGGTCACACAGCCGTGAAGCATCTGACAAGGATGAGGCCAAAAATGAGGAAAGTGAAGCTCATGTCAAAGAGGAAAAAACTGTGTACAAAAATTGCaaggatggagaaaaaaaaatagaggatGAGGTCAAAAAGACCTCTGACATCAAAACAGaatacagacaaacagagagagggaaagaaatatTAGCAGAGAGGAATTTAGAAAGAGaggtagaaaataaaaatgataaacaaagGGAGGCATCTAAGAAAGAGCGGGGTAGCAGCAAGACATCAGAGCTCATCTCCAAACTACAGAAAAAGGAGGATaataaagagaaggagagaaaggacAATAGTAAGATTGGAGAAAATTTGAGAACAAAAGGGTTGATATCCAAGTTACAGGGCAACAAAGAGGTAGAAAACagggagaaagaagaaaaagagaaggaggtagagaaaaaaagagagagtagAACAAAAGGACTAGTCTCCAAACTGGAGGAGCAGAAAAGCCAATCAGAACATGGCAGAGTGTCAGAAAGGGGAAGCAGACAAAGAGACCTGGAGGGTCCTGtgatagagaaaaagaaggaaaaggaagaggaaaagtgCAGTGAGAAAAGTAGACCCTACTCTGAAAGAGATGCAACTGGAACAGAGAAAAGGAAGGACAGAATGAAAAGGTGGGAGAAAGTGGATGAGATAGAGACGGagcaagaaaaacagagaaaggaagagaaaaagcgAGAAAGAGGTAAAGAGGAAGGGAAGAGTTTAGTGAAGAATGCTAAAACTCATAATAATGTTACTGAGACCTGCAGTAGTGGGGATGAGCAGTCTGTCAAAACAGGGGATGAGGAAGAGCATGATGAAGAGGATGATTATATGGACAGTGATACTGGCTCCAGCATGTTTGATGACCTCTTGGAACAGGTGCGCAATGATGATCCTGAACTCACCGAGCTTAACATCAACAACTCTGATGTTATCAAGACAGATACACTGATCCAGTTTGCTGAAGGACTTCGCAGTAACACTCACATTAAAACATTTGCTCTTGCCAACACAAGAGCTGATGATCACGTAGCTTTTGCCATTGCTGGGACTTTACGGAACAACACCACGCTAACAGGAATCAACCTGGATTCCAACCTTCTCACCGGCAAAGGCATTCTGGCTATCATTGAGTCTTTGCAGCACAATGCCACCCTTAAAGAGCTTCGCTTCCACAACCAGAGACACATCTGTGGAGGGAAGACTGAGATGGAAATGACAAAGGTACTACGGGATAATACTTCGTTACTCAAGTTGGGTTATCACTTTGAGCTAGCTGGGCCAAGGATGACCATGACCAACATCCTTAGTCGTAATATGGACCGTCAGCGGCAGAAACGACTGGAAGCACAACGTCTTGCCAAGCAGGAATCTCAGGCAAGCTCAGCGCCCCCTagtgaagagaaaaagaagctCATACCTGACAAGCCCAAACTTAAGCAAACTCCACAGTCCAACCCTGTTGAGAAAAAGCAATCTATATTAGCAAAAGTTTCCAAATTTAATAAACCCTCTTCACCCCCCAAAGCCACTCCACCCTCCAAGTCCACGGCTGCCCCCTCATCCTCCAAAGCAACAGCTAAAAGTGGGCTCACAACAGAGTCAAGCCCAGGacctccagctcctcctcctcctcctgccccAGTGCTGGATATTCAGGCACTTCGGAAGTCGTTGACCTCAGTCTCGCAGCGCAAACAAGACAGCAGCCATGTCTCAGCACGTGGAACACCAAAAAGTTCCAGAGATCAGTTGCTGGACTCTATCAGGAACTGCAACATGAACACGCTCAAGAAGGTCGAGGTTCCTAAGCGGCTGAAGTAGCAGATGGCAGAAAAACCAGAAGAGGAGCGAGTCAGCTATAGTGGATGTCCATGATGGCAATGATAAATGGATAATGAG

Function

NR:

description
PREDICTED: leiomodin-1-like

GO: NA

KEGG:

id description
K22030 LMOD; leiomodin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929718.2 True 2698 mRNA 0.47 4 9574382 9582740

Neighbor

gene id symbol gene type direction distance location
kdm5bb LOC108265643,LOC108425081 coding upstream 1344 9547306 ~ 9573038 (+)
tuba5 tuba8l,LOC108425079,LOC108265838,LOC107711852,LOC107679810,LOC107594520,LOC103031418 coding upstream 31103 9538833 ~ 9543279 (+)
LOC113534601 klhl12 coding upstream 37272 9521454 ~ 9537110 (+)
adipor1b adipor1,adipor1b,LOC108425077,LOC107679819,LOC107594512,LOC107711855 coding upstream 55124 9510939 ~ 9519258 (+)
mc3r mc3r,LOC108265186,LOC108425022,LOC103045867,LOC107751456 coding upstream 278899 9294380 ~ 9295483 (+)
LOC113526970 NA coding downstream 12050 9594790 ~ 9601084 (+)
LOC117597804 NA coding downstream 17081 9599821 ~ 9602488 (+)
LOC117597803 LOC108265688,LOC108265689 coding downstream 28053 9610793 ~ 9614695 (+)
LOC117597805 LOC108265689 coding downstream 32864 9615604 ~ 9620956 (+)
rap1aa rap1a,LOC106572472,LOC107594522,LOC106952760,LOC107090729,LOC107389464,LOC106567206 coding downstream 41560 9624300 ~ 9637023 (+)
G129849 NA non-coding upstream 78652 9450562 ~ 9495730 (+)
G129850 tmem189,LOC107556313,LOC107751443,LOC107669672,LOC108425075,LOC107711858 non-coding upstream 119973 9453034 ~ 9454409 (+)
G129831 NA non-coding upstream 236432 9324708 ~ 9337950 (+)
G129805 LOC108265845 non-coding upstream 261931 9309503 ~ 9312451 (+)
G129707 NA non-coding upstream 439447 9119938 ~ 9134935 (+)
G129971 NA non-coding downstream 17455 9600195 ~ 9602532 (+)
G129996 kcnd3 non-coding downstream 89327 9672067 ~ 9672335 (+)
G130021 NA non-coding downstream 132916 9715656 ~ 9715868 (+)
G130231 NA non-coding downstream 450610 10033350 ~ 10033565 (+)
G130285 NA non-coding downstream 502821 10085561 ~ 10147134 (+)
cebpb LOC108265421 other upstream 103103 9462088 ~ 9471279 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 1261726 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 1602633 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 1712812 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 2143385 7424001 ~ 7430997 (+)
LOC113532719 LOC108265185 other downstream 78075 9660815 ~ 9665693 (+)
G130390 NA other downstream 775206 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 961179 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 1100338 10683078 ~ 10696831 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 1123979 10706719 ~ 10741425 (+)

Expression


Co-expression Network