myl7 (myl7,LOC107753162,LOC107554405,LOC107703146,LOC106580582)


Basic Information

Item Value
gene id myl7
gene name myl7,LOC107753162,LOC107554405,LOC107703146,LOC106580582
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 26368415 ~ 26371797 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945688.2
GACTGAGAGAGGCAATGAGTTCTTTTTATAAAGAGCCCAGTGATAAGGTGAGCTATACATAAAGCCCCTATCAGCTCCCACTGACCcggacacacacgcacacacacagagctacaaGGAGCCAGCAGACATGGCGAGTAAAAAAACAGCAGCGAAGAGAAAGAACACCCAGCGGGCCTCCTCTAACGTTTTCTCCATGTTTGAGCAATCACAGATTCAAGAGTTCAAGGagGCTTTTGGCTGCATTGATCAGGACCGAGATGGTGTGATTAAGAAAACAGACCTGAAGGAAACTTATGCACAATTAGgaAAACTGAATGTAAGCGATGAAGAACTGGATGCCATGTTGGCTGAGGGTAAAGGCCCCATCAACTTcactgtcttcctctctctctttggaGAAAAACTCAATGGTACCGACCCAGAGGACACCATTCTCAACGCATTCAAACTGTTCGACCCCGAGGGCACCGGCTTTGTCAATAAGGAAGAGTTCAGAAGGCTTCTGATGAACCAGGCAGACAAGTTCACAGCAGAAGAGGTGGAGCAGGCTTTTTCCTTGGCCCCGATCGACGTGTCCGGGAATATCGACTACAAATCTCTTTGTTACATTATCACACACGGAGATGAGAAAGAAGAATCATAAAGAAAATACTAATTAAATATGTGAACAGGTTGAACTGGCTACTGGATACAAAGTGTTGGTAAAGTGAATTTAGATTGGattgtgagtctgtgtgtgtgtgtttgtgggggaGAGGCGTGTATTTCAATAATGATAATCatcattaaaggaatactccaacTTTC

Function

symbol description
myl7 Predicted to enable calcium ion binding activity. Acts upstream of or within several processes, including cardiac muscle cell proliferation; heart contraction; and myofibril assembly. Is expressed in several structures, including corpuscles of Stannius; heart primordium; mesoderm; muscle; and pericardial region. Orthologous to human MYL7 (myosin light chain 7).

NR:

description
myosin regulatory light chain 2, atrial isoform

GO:

id name namespace
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055005 ventricular cardiac myofibril assembly biological_process
GO:0045823 positive regulation of heart contraction biological_process
GO:0045214 sarcomere organization biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12754 MYL7; myosin regulatory light chain 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945688.2 True 810 mRNA 0.45 7 26368415 26371797

Neighbor

gene id symbol gene type direction distance location
npc1l1 npc1l1 coding upstream 26818 26324416 ~ 26341597 (+)
fahd2a fahd2b,LOC108440674,LOC107753161,LOC107703178,LOC107712485,LOC102211511,LOC105902774 coding upstream 260512 26096658 ~ 26107903 (+)
LOC113546011 LOC108265344 coding upstream 280949 26082899 ~ 26087466 (+)
antxr1a antxrl,antxr1a,antxr1,LOC108265351,LOC107661337,LOC107710819 coding upstream 379253 25952967 ~ 25989162 (+)
LOC117595683 NA coding upstream 427784 25938646 ~ 25940631 (+)
tbc1d10aa tbc1d10a,LOC108265670,LOC108441901,LOC106579927 coding downstream 2013 26373810 ~ 26397861 (+)
aplnra aplnr,LOC108441910,LOC107753098,LOC107703172,LOC107687998,LOC107550977,LOC107554406,LOC107712463 coding downstream 63719 26435516 ~ 26437704 (+)
hpdb hpd,LOC108264894,LOC108441909,LOC107723232 coding downstream 96522 26468319 ~ 26475491 (+)
trnaa-agc NA coding downstream 104481 26476278 ~ 26476350 (+)
trnaa-agc_1 NA coding downstream 105008 26476805 ~ 26476877 (+)
G139235 LOC108265343 non-coding upstream 332282 26032594 ~ 26036133 (+)
LOC113546140 NA non-coding upstream 417966 25948849 ~ 25950449 (+)
G139172 NA non-coding upstream 553374 25810175 ~ 25815041 (+)
G139166 NA non-coding upstream 685324 25672518 ~ 25683091 (+)
G138961 NA non-coding upstream 916838 25448615 ~ 25451577 (+)
G139551 NA non-coding downstream 141095 26512892 ~ 26519482 (+)
G139647 NA non-coding downstream 506839 26878636 ~ 26899417 (+)
G139653 NA non-coding downstream 519280 26891077 ~ 26894530 (+)
G139686 NA non-coding downstream 735132 27106929 ~ 27108878 (+)
G139756 NA non-coding downstream 967196 27338993 ~ 27341506 (+)
LOC117597866 NA other upstream 451608 25909575 ~ 25916807 (+)
egr3 egr3 other upstream 809684 25551894 ~ 25558731 (+)
LOC113533115 gnrh1 other upstream 1234157 25132741 ~ 25134258 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 2354634 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 2473690 23890416 ~ 23894725 (+)
car15 LOC108264895 other downstream 28394 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 191023 26562820 ~ 26567932 (+)
rimbp2 rimbp2,LOC108414005 other downstream 254256 26626053 ~ 26729946 (+)
fam160b2 LOC108265858 other downstream 811224 27183021 ~ 27261741 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other downstream 895378 27267175 ~ 27295337 (+)

Expression


Co-expression Network