glt1d1 (glt1d1)


Basic Information

Item Value
gene id glt1d1
gene name glt1d1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 28468419 ~ 28495033 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945691.2
AACACCAAAAGTAAATATCCGTGTAAAAATACAGTACCGGTGACCCTCTTGTACAGGACAGGATTAAACAGAGCAGCCTTTGTTTCAGATATTTTAAgtgtaaaattttaatttattccagACTTATTTCGCGAGACAGTGGAGAAATGAGATTACTGTTCCTAGCTTGCCTCAGTCCCAAAACTGGGAATTGTACTACTGCCGAAAGGATAAGaGATCATATAGAGAGCGCAGGTCATGTCTGTGTGCTTCGGGACACCAGAGACTTCAGCTCGGCTTCTGAGGTAACGCTGCTCATGAGTCAAGATCAAGAACCGTTTGACGCAGCGCTGGCGATTCATCTATTTAAAGGAGGAAGACTCCTCTTAGATGTTGGAGTGCCTTTCGGAGTGGTCTTCGGAGGGACGGACATCAACGAGGACATCAAGGACGAACACAAGCGAAGCGTCATGGAGGAAGTTCTGCACAGAGCCAGGTTTGCTGTAGCGTTCACAGAGGAGATGAAGCAGAAAGCTCAGGCTTACTTGGACTGTGACATCACTAAGATCTATGTGCAAGCTCAAGGAATTGAGACGAGAGTGAGCTCTGACTTCAGCTGGAGGGATTTCTTACGCACTTCAGgagtgtgtgtggatcgAGTAGATGACCTGCACGTGTTCCTGTTAGTGTGTGGACTCAGAAAAGTGAAGGACCCTCTCTACCTGCTGAACGCTTTCTCAGAATGGCATACCCAGAACCCTCTGGTGATCCTCATCATCATTGGCCCAAAGATCGACCCTGTACTTAGCTCAGAGGTTGAAGAGTGTGTGAAGAGGTCTGCTGGAGTATTTTTAGCAGCAGAGAGGAGTCAGGAGGAACTCCACGCCGCCATGAGGAAATCATTCGCCGTGGTCAACTCGTCCGTTTCTGAAGGCATGTCCGCCGCCATCTTAGAGgCCATGGATTTGAATGCGCCAGTGTTAGCGAGGGATATTCCCGGGAACGCTGCGATTGTCCAACACGAGCACAGCGGCCTGCTCTACTCGTCCCCCGAGGAGTTTGTGCTTCTGTCCAAGAGACTGCTGAGTGATGAGGAACTGCAGGAGAACCTGAGAACCAACGGTAAACGCTACGTTATGGAGAGACACGACTCTATGAAAGAGAGAACGACGTACCAACAGCTGGTGGAAAAACTGCAGTAAGGCTCAGAGCAGCTTCACTGTTTTCCAGTTTGCTCAAATGTTCTTCTTGTGAACCTTCTCAACACCTGATGGCTTTTATACGGATGAGATCATTTTCAACTTGAACCCATGGGAACAAACATTGCATACATTTAGGTTTACAGTTACAGGAGCGATGTTTTAATCTATTAGTAATAATCACTGCTGCAACAAAAACGTTTCATTTTTAGGAAAAATTATGATAAGGAAATTCAAATTGAATGGGTTTTTATAAATGCTTGGTTTCCTTGCAGTAGGAAAAGATTTTCAATTTATGTTTACGTAACAGGAAAGTCATCTTCGCTAATAGTTTTGCTATTTCAGGTGCTTTGTCTTATAGGAACATTTTTGACATTCCAGAGCTCTAAAACGAGCTTAACGAGTGTCTGTACGATGGAGGAAAACTTTTTAAAGTGAACACCAGGGTCCATTTTATCCTGAGCAGCTAAAAAATACAAAGATGATCAATTACATCATTGAGCTAATGCAAACAAGACATAATTATGCACGACTTAGTgctaatattacattttcagagATTTAGTGGTTAAAATCTCTTATATAACAtatcatttacatattaattaccGAATTAGTATATCAAGATCGGCTAACTTAGCGCTTTATAATATTATCACatgtattaattataataattgttgcatttaaatatatattttattctatattttttctgtcatttaatACCAAACTCAAATTTGAAATTAGATATTAGAAACTAATAAGAGGTCTGTAGACAGTACATATTCTCTTCTGTGCTTTGGGGGAACCCTTAactgtagaaccctacaacaaaggcATTTTCTTCCATCTGAAACCCTTTTATGAACATCTAAAACCCTTAATTGTCCAATGCCACTTTAAAggacccttgaagaaccctttttttaagagtgtatgtATTTACTGGGTAAATGTGCAgcacaaactccaaattattgctcattattttcttcttaataacaAGAACCTGTCAGGATAGTTCTCCTTTTagaaaaatggttctttaagtgttcactggataattaatgGTTCTTAGCTTCAAAAAAGGAAACCTTTCTGGTAGGTAAAGACTTTTATAGGGTTCTACCCAGAGGGACAGCCGAAGAACCAGGTCTTAGTGTCTTAGTAcctgttatttatttctaattatgCAGTTTGAGGTTGGTattaaatgacaataaataatgaataaaatatatctttaaatgtaataattaatgtgattaatgtaaaaagtgtttaatataAAAGATAGGTGATTATGGTGATAAGATAATTAGGTACTAAATAGGAATGAAGGAGTGTCTGAAAACTTCTGATTTCCATGACAACCGGTTTACAGGGCTggtgttttactgttttaaatgaTGTACTGTTTACAGaattataaatctatataaacCGTATAGAAGGCTTTATAGGAATTCTGAACTACATAAGTACTGTAGTCGAAGCTTAGTAATCCTCAGACTGTGGGTTTGAGTTTGTTTTTAGGAATAATCTTTACATACAGCaggttttgaaatgtttcacagttgataatgtaaatgctgtaaatgctcaaagaaatgtttttaaaaatatatttattcattattcttcTGAATGCAATCACTTCATGTATGTCTTCTGAATGTACCgcatg

Function

symbol description
glt1d1 Orthologous to human GLT1D1 (glycosyltransferase 1 domain containing 1).

NR:

description
glycosyltransferase 1 domain-containing protein 1 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945691.2 True 2868 mRNA 0.39 12 28468419 28495033

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-14d3.1 tmem132c coding upstream 55260 28196856 ~ 28413159 (+)
LOC113546156 NA coding upstream 358321 28103189 ~ 28110098 (+)
si:ch211-158d24.2 LOC108265298 coding upstream 377626 28054188 ~ 28090793 (+)
LOC117597849 NA coding upstream 453131 28005083 ~ 28015288 (+)
olfml2a olfml2a,olm2a coding upstream 485336 27954282 ~ 27983083 (+)
sf3a1 sf3a1,LOC107564451,LOC107550953 coding downstream 658513 29153546 ~ 29164988 (+)
pold2 pold2,LOC107747204 coding downstream 672447 29167480 ~ 29178413 (+)
bag4 bag4,LOC107702866,LOC107548251,LOC103396927 coding downstream 811978 29307011 ~ 29313313 (+)
LOC113546128 LOC108265329,LOC103021710,LOC108414840 coding downstream 820786 29315819 ~ 29318495 (+)
rsph14 rsph14 coding downstream 823989 29319022 ~ 29325104 (+)
G140574 slc15a4,LOC107564463,LOC107712031,LOC107576090 non-coding upstream 33984 28419120 ~ 28434435 (+)
G140328 NA non-coding upstream 296626 28171588 ~ 28171793 (+)
G140318 NA non-coding upstream 312508 28155708 ~ 28155911 (+)
G140311 NA non-coding upstream 331587 28136611 ~ 28136832 (+)
G140307 NA non-coding upstream 343608 28124606 ~ 28124811 (+)
G140748 NA non-coding downstream 20537 28515570 ~ 28516680 (+)
G140754 LOC108265443 non-coding downstream 82512 28577545 ~ 28744414 (+)
G140759 LOC108265444 non-coding downstream 87861 28582894 ~ 28748455 (+)
G140755 NA non-coding downstream 136855 28631888 ~ 28743837 (+)
G140765 NA non-coding downstream 143086 28638119 ~ 28639737 (+)
arpc5la arpc5la,LOC108265305,LOC108411248,LOC107571143,LOC107753090,LOC107550963,LOC107676626 other upstream 440969 28019184 ~ 28027450 (+)
dbnlb dbnl other upstream 608717 27838245 ~ 27859702 (+)
nr6a1a nr6a1,LOC107563838,LOC107721088,LOC107678448,LOC107698081,LOC107753334 other upstream 977958 27405450 ~ 27490461 (+)
G139781 NA other upstream 1038942 27428727 ~ 27429477 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other upstream 1173082 27267175 ~ 27295337 (+)
slc7a4 slc7a4 other downstream 253801 28748834 ~ 28803174 (+)
LOC117597881 LOC108265326 other downstream 830901 29325934 ~ 29351762 (+)
LOC113546008 LOC108264940,LOC108412050 other downstream 1365155 29860188 ~ 29876280 (+)
LOC113546064 hps4 other downstream 1408480 29903513 ~ 29929070 (+)
G141234 hps4 other downstream 1414996 29910029 ~ 29929154 (+)

Expression


Co-expression Network