LOC113546011 (LOC108265344)


Basic Information

Item Value
gene id LOC113546011
gene name LOC108265344
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 26082899 ~ 26087466 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945702.2
ACAGAATCAGTGCTCACATCGCTTAAGAAACAAAAGTAAAAGCAGCTCGCTTTGTTTTCACGGTTTGTTCCGCCTCTGTGAGTGCAGTAAAATGGCAGAAGCTGTTCTAAAAGCGCAGGACTCGTTCTGCTGTCCAGTCTGCCTGGATCTCCTAATGGACCCAGTGACGATTCCATGTGGACACAGTTATTGTCTGAGCTGTATTAATGGCTGCTGGGATCAGAAAGGAAATTATGTTTGTCCCCAGTGCAGAGAGACGTTCACTCCGAGGCCTGTTCTCAAGAAGAACACCATGCTGGCTGAACTGGTTGAGGCACTGAGGAAGACGAGACTTCAGGCTGCTACTGTTGTTGTCTCTTACGCTCAACCTGGAGACGTAGAGTGTGACGTCTGCTCTGAGAAAAAGCACAAAGCCGTCAAGTCCTGTATGGTGTGCCTGGCCTCGTATTGTGAAGCTCACATTCAGACTCACTACAATTCTCCTGCGTTAAAGAAGCATAAGCTGGTCGAGGTCTCCATGAATCTTCAGCAGAAGATCTGCTCTCAGCATGGCAAGCTCTTGGAGATTTTCTGTCGCACTGATCAGAAGTTCATTTGTTGCTTGTGTGTAATGGATGAACATAGTGGTCATCAGACAGTCTTACCTATAGCAGAAAGAGCTGAGAAACAGaagcAACTGGTGGAGACCCAGAGAGAATCCCAGCAGAGAatccaagagagagagaagaaagtaCAAGAGCTGAAACAGGATCTGGAGTCGGTCAGGCTCTCTGCACAGACAGCTGTTAAAGAAAGTGAGAGGCTCTTCACTGATCTGATTCAGTCCATTGAGAAAAGAAACGTGGAGGTGAAGGAACTGATCTGGGCTCAGGAGAAAGCTGAACTGACTCTGGTGGAGGAACTTATAGAGAACCTGGAGCAGGAGCTTGCTGATCTGAGGAAGAGAGATGCTGAGCTGGAGgagctttcacacacagatGACCACATCCATTTCCTCCAGAGTTTCCAGTCTCTCAGTGTCCCTCCTGGACTTGCAGAATTACCCAAGTTTATGATCAGACCTAAATTTTCCATAGAGGAACTGAGGAAAGCTGTAACTGGACTGACAGAGCAAGTGGAAAAGTTCTATAAACTGCAGTTAGTCAAATCTGGAGACTATAGTGCCTTGTTGCCTGAGCCAAAGACCAGAGAAGACTTTATGAAATATTTCTGTCAGCTGACTCTGGATCCAAACACAGCACACCGTCGGCTCTCTCTATCTGAGGAGAACAGAAAAGTAATGGTGACTCGTCAGGCTCAGAACCCTCCTGATCATCCCGACAGATTTGACATGACACAGCAAGTTCTGTGTAAAGAGACCTTGCTGGGGCGTTGTTACTGGGAGGTCGAGCAGATTAGCAAGTACAATTCTTCAATTGCAGTCTCTTATAAAGGCATCAGCAGGAAAGGCACAAGCAATGAGTCTAGCTTTGAGCAAAATGACAAGTCCTGGAGTTTCACTTGTTTTAAGTCgaattatttctttaaacacaataacaattgCACTGAGGTCCCTGTAGAGTCATGCTCCACCAGAATAGGAGTGTATCTGGATCACTGGGCAGgaactctgtccttctacagcgtCTCTGACACCATGACTCTTctccacagagtccacaccacattcactcagcccCTCTATGCTGGCTTTCAGATTTATGGTTATGATAACTGTTTTCAAATATGTGGTCCTAATCTGTAAAAGCCTGACATTTCCATTATGTAGTTGCCTAAATTGCTCCGGAtgagggcgtctgccaaatgccataaatgtcgGATAAATTGTGTATCACAAAATGATGTATAATTCaatgtgtattttaaattatattaaacatcTTATCCACTGTGTACATCATGGTGTGCATATATATAAGGAATTatactgttcattttattttgtagtcAAGTCTGCACTTTACTAAAACAGTTCCTCATATCAGAATGCCTAACTACCCCGTAATGCCTAACTACTTTAATTCCGAAGTTCAATCAAGCTTTGaaatttctacattaaaaacc
>XM_026945703.2
TCGCTTAAGAAACAAAAGTAAAAGCAGCTCGCTTTGTTTTCACGGTTTGTTCCGCCTCTGTGAGTGCAGTAAAATGGCAGAAGCTGTTCTAAAAGCGCAGGACTCGTTCTGCTGTCCAGTCTGCCTGGATCTCCTAATGGACCCAGTGACGATTCCATGTGGACACAGTTATTGTCTGAGCTGTATTAATGGCTGCTGGGATCAGAAAGGAAATTATGTTTGTCCCCAGTGCAGAGAGACGTTCACTCCGAGGCCTGTTCTCAAGAAGAACACCATGCTGGCTGAACTGGTTGAGGCACTGAGGAAGACGAGACTTCAGGCTGCTACTGTTGTTGTCTCTTACGCTCAACCTGGAGACGTAGAGTGTGACGTCTGCTCTGAGAAAAAGCACAAAGCCGTCAAGTCCTGTATGGTGTGCCTGGCCTCGTATTGTGAAGCTCACATTCAGACTCACTACAATTCTCCTGCGTTAAAGAAGCATAAGCTGGTCGAGGTCTCCATGAATCTTCAGCAGAAGATCTGCTCTCAGCATGGCAAGCTCTTGGAGATTTTCTGTCGCACTGATCAGAAGTTCATTTGTTGCTTGTGTGTAATGGATGAACATAGTGGTCATCAGACAGTCTTACCTATAGCAGAAAGAGCTGAGAAACAGcAACTGGTGGAGACCCAGAGAGAATCCCAGCAGAGAatccaagagagagagaagaaagtaCAAGAGCTGAAACAGGATCTGGAGTCGGTCAGGCTCTCTGCACAGACAGCTGTTAAAGAAAGTGAGAGGCTCTTCACTGATCTGATTCAGTCCATTGAGAAAAGAAACGTGGAGGTGAAGGAACTGATCTGGGCTCAGGAGAAAGCTGAACTGACTCTGGTGGAGGAACTTATAGAGAACCTGGAGCAGGAGCTTGCTGATCTGAGGAAGAGAGATGCTGAGCTGGAGgagctttcacacacagatGACCACATCCATTTCCTCCAGAGTTTCCAGTCTCTCAGTGTCCCTCCTGGACTTGCAGAATTACCCAAGTTTATGATCAGACCTAAATTTTCCATAGAGGAACTGAGGAAAGCTGTAACTGGACTGACAGAGCAAGTGGAAAAGTTCTATAAACTGCAGTTAGTCAAATCTGGAGACTATAGTGCCTTGTTGCCTGAGCCAAAGACCAGAGAAGACTTTATGAAATATTTCTGTCAGCTGACTCTGGATCCAAACACAGCACACCGTCGGCTCTCTCTATCTGAGGAGAACAGAAAAGTAATGGTGACTCGTCAGGCTCAGAACCCTCCTGATCATCCCGACAGATTTGACATGACACAGCAAGTTCTGTGTAAAGAGACCTTGCTGGGGCGTTGTTACTGGGAGGTCGAGCAGATTAGCAAGTACAATTCTTCAATTGCAGTCTCTTATAAAGGCATCAGCAGGAAAGGCACAAGCAATGAGTCTAGCTTTGAGCAAAATGACAAGTCCTGGAGTTTCACTTGTTTTAAGTCgaattatttctttaaacacaataacaattgCACTGAGGTCCCTGTAGAGTCATGCTCCACCAGAATAGGAGTGTATCTGGATCACTGGGCAGgaactctgtccttctacagcgtCTCTGACACCATGACTCTTctccacagagtccacaccacattcactcagcccCTCTATGCTGGCTTTCAGATTTATGGTTATGATAACTGTTTTCAAATATGTGGTCCTAATCTGTAAAAGCCTGACATTTCCATTATGTAGTTGCCTAAATTGCTCCGGAtgagggcgtctgccaaatgccataaatgtcgGATAAATTGTGTATCACAAAATGATGTATAATTCaatgtgtattttaaattatattaaacatcTTATCCACTGTGTACATCATGGTGTGCATATATATAAGGAATTatactgttcattttattttgtagtcAAGTCTGCACTTTACTAAAACAGTTCCTCATATCAGAATGCCTAACTACCCCGTAATGCCTAACTACTTTAATTCCGAAGTTCAATCAAGCTTTGaaatttctacattaaaaaccGT
>XM_034307030.1
TCGCTTAAGAAACAAAAGTAAAAGCAGCTCGCTTTGTTTTCACGGTTTGTTCCGCCTCTGTGAGTGCAGTAAAATGGCAGAAGCTGTTCTAAAAGCGCAGGACTCGTTCTGCTGTCCAGTCTGCCTGGATCTCCTAATGGACCCAGTGACGATTCCATGTGGACACAGTTATTGTCTGAGCTGTATTAATGGCTGCTGGGATCAGAAAGGAAATTATGTTTGTCCCCAGTGCAGAGAGACGTTCACTCCGAGGCCTGTTCTCAAGAAGAACACCATGCTGGCTGAACTGGTTGAGGCACTGAGGAAGACGAGACTTCAGGCTGCTACTGTTGTTGTCTCTTACGCTCAACCTGGAGACGTAGAGTGTGACGTCTGCTCTGAGAAAAAGCACAAAGCCGTCAAGTCCTGTATGGTGTGCCTGGCCTCGTATTGTGAAGCTCACATTCAGACTCACTACAATTCTCCTGCGTTAAAGAAGCATAAGCTGGTCGAGGTCTCCATGAATCTTCAGCAGAAGATCTGCTCTCAGCATGGCAAGCTCTTGGAGATTTTCTGTCGCACTGATCAGAAGTTCATTTGTTGCTTGTGTGTAATGGATGAACATAGTGGTCATCAGACAGTCTTACCTATAGCAGAAAGAGCTGAGAAACAGaagcAACTGGTGGAGACCCAGAGAGAATCCCAGCAGAGAatccaagagagagagaagaaagtaCAAGAGCTGAAACAGGATCTGGAGTCGGTCAGGCTCTCTGCACAGACAGCTGTTAAAGAAAGTGAGAGGCTCTTCACTGATCTGATTCAGTCCATTGAGAAAAGAAACGTGGAGGTGAAGGAACTGATCTGGGCTCAGGAGAAAGCTGAACTGACTCTGGTGGAGGAACTTATAGAGAACCTGGAGCAGGAGCTTGCTGATCTGAGGAAGAGAGATGCTGAGCTGGAGgagctttcacacacagatGACCACATCCATTTCCTCCAGAGTTTCCAGTCTCTCAGTGTCCCTCCTGGACTTGCAGAATTACCCAAGTTTATGATCAGACCTAAATTTTCCATAGAGGAACTGAGGAAAGCTGTAACTGGACTGACAGAGCAAGTGGAAAAGTTCTATAAACTGCAGTTAGTCAAATCTGGAGACTATAGTGCCTTGTTGCCTGAGCCAAAGACCAGAGAAGACTTTATGAAATATTCTTGCAGGTCACAGGAAACCACAGGCCCCAGGACCCTGGGGAAGACAGACACAGAATGAGGGGGGATATATGGAAAAAAGAAGGCAGGACTGAGCTTCTAAGA

Function

NR:

description
PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945702.2 True 2064 mRNA 0.44 6 26082899 26087464
XM_026945703.2 False 2045 mRNA 0.44 6 26082917 26087466
XM_034307030.1 False 1293 mRNA 0.47 6 26082917 26085985

Neighbor

gene id symbol gene type direction distance location
antxr1a antxrl,antxr1a,antxr1,LOC108265351,LOC107661337,LOC107710819 coding upstream 93737 25952967 ~ 25989162 (+)
LOC117595683 NA coding upstream 142268 25938646 ~ 25940631 (+)
LOC113537824 NA coding upstream 163636 25917747 ~ 25919263 (+)
disp3 disp3,LOC107710822,LOC107553125,LOC107678473,LOC107562651 coding upstream 278457 25762965 ~ 25804442 (+)
si:dkey-32e23.4 si:dkey-32e23.4,LOC108426682,LOC108265374,LOC103036512,LOC107710834,LOC107562650,LOC107665195,LOC107678420 coding upstream 379774 25686205 ~ 25703125 (+)
fahd2a fahd2b,LOC108440674,LOC107753161,LOC107703178,LOC107712485,LOC102211511,LOC105902774 coding downstream 9192 26096658 ~ 26107903 (+)
npc1l1 npc1l1 coding downstream 236950 26324416 ~ 26341597 (+)
myl7 myl7,LOC107753162,LOC107554405,LOC107703146,LOC106580582 coding downstream 280949 26368415 ~ 26371797 (+)
tbc1d10aa tbc1d10a,LOC108265670,LOC108441901,LOC106579927 coding downstream 286344 26373810 ~ 26397861 (+)
aplnra aplnr,LOC108441910,LOC107753098,LOC107703172,LOC107687998,LOC107550977,LOC107554406,LOC107712463 coding downstream 348050 26435516 ~ 26437704 (+)
G139235 LOC108265343 non-coding upstream 46766 26032594 ~ 26036133 (+)
LOC113546140 NA non-coding upstream 132450 25948849 ~ 25950449 (+)
G139172 NA non-coding upstream 267858 25810175 ~ 25815041 (+)
G139166 NA non-coding upstream 399808 25672518 ~ 25683091 (+)
G138961 NA non-coding upstream 631322 25448615 ~ 25451577 (+)
G139551 NA non-coding downstream 425426 26512892 ~ 26519482 (+)
G139647 NA non-coding downstream 791170 26878636 ~ 26899417 (+)
G139653 NA non-coding downstream 803611 26891077 ~ 26894530 (+)
G139686 NA non-coding downstream 1019463 27106929 ~ 27108878 (+)
G139756 NA non-coding downstream 1251527 27338993 ~ 27341506 (+)
LOC117597866 NA other upstream 166092 25909575 ~ 25916807 (+)
egr3 egr3 other upstream 524168 25551894 ~ 25558731 (+)
LOC113533115 gnrh1 other upstream 948641 25132741 ~ 25134258 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 2069118 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 2188174 23890416 ~ 23894725 (+)
car15 LOC108264895 other downstream 312725 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 475354 26562820 ~ 26567932 (+)
rimbp2 rimbp2,LOC108414005 other downstream 538587 26626053 ~ 26729946 (+)
fam160b2 LOC108265858 other downstream 1095555 27183021 ~ 27261741 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other downstream 1179709 27267175 ~ 27295337 (+)

Expression


Co-expression Network