fahd2a (fahd2b,LOC108440674,LOC107753161,LOC107703178,LOC107712485,LOC102211511,LOC105902774)


Basic Information

Item Value
gene id fahd2a
gene name fahd2b,LOC108440674,LOC107753161,LOC107703178,LOC107712485,LOC102211511,LOC105902774
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 26096658 ~ 26107903 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945706.2
TTTACTGTGAACTTTACTACAGCACAAAGGTTCAGGGATCTTTGTAAAGGACCCAGAATGTTGTCGTAGAAAAGCTTCTTCTTGTGAATCTGTGGATTTGGTGCAGAATCGGTTATTTCCTCAGTCTCACTGAATCAGGCTCAGGCACACGCACCCTCACCTCAGCCAGCATGCGTCTGGTCCAGTTCTGCAGACGGGGAGCCGAGGGAAACGTGAGGGTTGGTGTGGAGAGGGAGAACGGTGTCGTCGACTTGAAGGCGTTTGATCAGTCCATGCCGTCCACCATGAGAGAGTTCTTGGAACTGGGAGAGAAGGGCATGGAGTGCGCCCAGAGAGCCGAGTCCAGTGGCAAGTGTGTGCTCCCTCACTCCGATATCCAGCTCCTGTCTCCAGTCACCGGCCCAgacaaggtggtgtgtgtgggtatgaACTACAGAGACCACTGCCTGGAGCAGAACGTCCCCATCCCCACTGAGCCCATCATCTTCAACAAGTTCCCCTCCTCCATCACGGGCCCCTACGACAACATCCACCTGCCAAACAAGAGCCAGGAGGTGGACTGGGAAGTGGAGCTTGCCTTTGTGattggaaaaaaaggaaagcacaTAAAGGAAGAGGACGCTCTCCGTCACGTTGCCGGCTTCACCGTAGCCAACGATGTCAGCGCTCGTGACTGGCAGATGGAGAAAAACAGCAAGCAGTGGCTTCTGGGAAAAACATTCGACACATTCTGTCCACTAGGGCCTGCCCTTGTTACCACAGAAGCGCTGAAGGACGTCCACAACCTGGGGATCCGGTGCCTGGTTAACAGTGACGTAGTTCAGGACAGCAACACCAATCAGCTGATCTTTAAGACGGAGAAGCTGGTGGCGTGGGTCTCGCAGTTTGCGACTCTGTGCCCAGGCGACGTGTTTCTAACAGGCACTCCTCCAGGGGTGGGTGCGTTCAGAAAGCCACCCGTCTTTCTAAAGAAAGGAGACGTCGTGGAGTGTCAGATTGAGGAGATCGGGTCCATCCGAAACACAGTGGTGTGATTCCAACATGGTCGACTGACTTTATCTGAGCTACATGGATGAAAAAATTACTGattcacattttcactgttgcaATGCTTCAATGTCTAAGATGCTTCTGAAATTTTAATCTGAATCATGTGCACTACAAATGATTTGCCCACAGGTCAGCTGCTGTGATTTTCCAGGAGATGGCGCTCTGCTGATTATGTTTAGGGAGAAAcagtagttgttttttttttttttttggcttaagGCAGGgtttttgtcattatttccaGATTTTTCTGTGTTCTGGTTTGTTACTAATTTTAAATGTGTGGAAAACAATGGAAAGTCTAACAACAATGATGTAGAACCTTCACTTCCTAAGTTTTACTTAGACAAGAGAATATCCATATGCATCTCTATGTTTTCCTACAGtttcactgttcctttaaattcAATACCAGTGCATGGACCCAATGAAACACAAGAACATTTTCATATCTGTGAAACTACTTAAAATACTCAAATAGCATTGAGTAAATAAAATCTGAGAACTGA
>XM_026945707.2
ACTTGCACACGTTTGCGAAATGAACAAAAATCGAAACACAGAAGAACTTGATCTTGATTTATGATTGTAAACGACTTGTTGATGATTATCACCGACAacaaattgaataaaatagTGAGTTTATCGCGTTGAAGTACACTTACTTTAATAGAAAGAACTACAGTTAGGAAACCCGGAAGTGCAGAAGCTGTATTTTGGACAGGAGAACTTGTAAAGGCTCAGGCACACGCACCCTCACCTCAGCCAGCATGCGTCTGGTCCAGTTCTGCAGACGGGGAGCCGAGGGAAACGTGAGGGTTGGTGTGGAGAGGGAGAACGGTGTCGTCGACTTGAAGGCGTTTGATCAGTCCATGCCGTCCACCATGAGAGAGTTCTTGGAACTGGGAGAGAAGGGCATGGAGTGCGCCCAGAGAGCCGAGTCCAGTGGCAAGTGTGTGCTCCCTCACTCCGATATCCAGCTCCTGTCTCCAGTCACCGGCCCAgacaaggtggtgtgtgtgggtatgaACTACAGAGACCACTGCCTGGAGCAGAACGTCCCCATCCCCACTGAGCCCATCATCTTCAACAAGTTCCCCTCCTCCATCACGGGCCCCTACGACAACATCCACCTGCCAAACAAGAGCCAGGAGGTGGACTGGGAAGTGGAGCTTGCCTTTGTGattggaaaaaaaggaaagcacaTAAAGGAAGAGGACGCTCTCCGTCACGTTGCCGGCTTCACCGTAGCCAACGATGTCAGCGCTCGTGACTGGCAGATGGAGAAAAACAGCAAGCAGTGGCTTCTGGGAAAAACATTCGACACATTCTGTCCACTAGGGCCTGCCCTTGTTACCACAGAAGCGCTGAAGGACGTCCACAACCTGGGGATCCGGTGCCTGGTTAACAGTGACGTAGTTCAGGACAGCAACACCAATCAGCTGATCTTTAAGACGGAGAAGCTGGTGGCGTGGGTCTCGCAGTTTGCGACTCTGTGCCCAGGCGACGTGTTTCTAACAGGCACTCCTCCAGGGGTGGGTGCGTTCAGAAAGCCACCCGTCTTTCTAAAGAAAGGAGACGTCGTGGAGTGTCAGATTGAGGAGATCGGGTCCATCCGAAACACAGTGGTGTGATTCCAACATGGTCGACTGACTTTATCTGAGCTACATGGATGAAAAAATTACTGattcacattttcactgttgcaATGCTTCAATGTCTAAGATGCTTCTGAAATTTTAATCTGAATCATGTGCACTACAAATGATTTGCCCACAGGTCAGCTGCTGTGATTTTCCAGGAGATGGCGCTCTGCTGATTATGTTTAGGGAGAAAcagtagttgttttttttttttttttggcttaagGCAGGgtttttgtcattatttccaGATTTTTCTGTGTTCTGGTTTGTTACTAATTTTAAATGTGTGGAAAACAATGGAAAGTCTAACAACAATGATGTAGAACCTTCACTTCCTAAGTTTTACTTAGACAAGAGAATATCCATATGCATCTCTATGTTTTCCTACAGtttcactgttcctttaaattcAATACCAGTGCATGGACCCAATGAAACACAAGAACATTTTCATATCTGTGAAACTACTTAAAATACTCAAATAGCATTGAGTAAATAAAATCTGAGAACTGA
>XM_034307033.1
ACTTGCACACGTTTGCGAAATGAACAAAAATCGAAACACAGAAGAACTTGATCTTGATTTATGATTGTAAACGACTTGTTGATGATTATCACCGACAacaaattgaataaaatagTGAGTTTATCGCGTTGAAGTACACTTACTTTAATAGAAAGAACTACAGTTAGGAAACCCGGAAGTGCAGAAGCTGTATTTTGGACAGGAGAACTTGTAAAGatgAGAGTTGTGTGGAGCTCATGGCTCAGTTTGAGGAGACTCAGTTATATGTTTTCTGTAGGCTCAGGCACACGCACCCTCACCTCAGCCAGCATGCGTCTGGTCCAGTTCTGCAGACGGGGAGCCGAGGGAAACGTGAGGGTTGGTGTGGAGAGGGAGAACGGTGTCGTCGACTTGAAGGCGTTTGATCAGTCCATGCCGTCCACCATGAGAGAGTTCTTGGAACTGGGAGAGAAGGGCATGGAGTGCGCCCAGAGAGCCGAGTCCAGTGGCAAGTGTGTGCTCCCTCACTCCGATATCCAGCTCCTGTCTCCAGTCACCGGCCCAgacaaggtggtgtgtgtgggtatgaACTACAGAGACCACTGCCTGGAGCAGAACGTCCCCATCCCCACTGAGCCCATCATCTTCAACAAGTTCCCCTCCTCCATCACGGGCCCCTACGACAACATCCACCTGCCAAACAAGAGCCAGGAGGTGGACTGGGAAGTGGAGCTTGCCTTTGTGattggaaaaaaaggaaagcacaTAAAGGAAGAGGACGCTCTCCGTCACGTTGCCGGCTTCACCGTAGCCAACGATGTCAGCGCTCGTGACTGGCAGATGGAGAAAAACAGCAAGCAGTGGCTTCTGGGAAAAACATTCGACACATTCTGTCCACTAGGGCCTGCCCTTGTTACCACAGAAGCGCTGAAGGACGTCCACAACCTGGGGATCCGGTGCCTGGTTAACAGTGACGTAGTTCAGGACAGCAACACCAATCAGCTGATCTTTAAGACGGAGAAGCTGGTGGCGTGGGTCTCGCAGTTTGCGACTCTGTGCCCAGGCGACGTGTTTCTAACAGGCACTCCTCCAGGGGTGGGTGCGTTCAGAAAGCCACCCGTCTTTCTAAAGAAAGGAGACGTCGTGGAGTGTCAGATTGAGGAGATCGGGTCCATCCGAAACACAGTGGTGTGATTCCAACATGGTCGACTGACTTTATCTGAGCTACATGGATGAAAAAATTACTGattcacattttcactgttgcaATGCTTCAATGTCTAAGATGCTTCTGAAATTTTAATCTGAATCATGTGCACTACAAATGATTTGCCCACAGGTCAGCTGCTGTGATTTTCCAGGAGATGGCGCTCTGCTGATTATGTTTAGGGAGAAAcagtagttgttttttttttttttttggcttaagGCAGGgtttttgtcattatttccaGATTTTTCTGTGTTCTGGTTTGTTACTAATTTTAAATGTGTGGAAAACAATGGAAAGTCTAACAACAATGATGTAGAACCTTCACTTCCTAAGTTTTACTTAGACAAGAGAATATCCATATGCATCTCTATGTTTTCCTACAGtttcactgttcctttaaattcAATACCAGTGCATGGACCCAATGAAACACAAGAACATTTTCATATCTGTGAAACTACTTAAAATACTCAAATAGCATTGAGTAAATAAAATCTGAGAACTGA
>XM_034307034.1
TTTACTGTGAACTTTACTACAGCACAAAGGTTCAGGGATCTTTGTAAAGGACCCAGAATGTTGTCGTAGAAAAGCTTCTTCTTGTGAATCTGTGGATTTGGTGCAGAATCGGTTATTTCCTCAGTCTCACTGAATCAGatgAGAGTTGTGTGGAGCTCATGGCTCAGTTTGAGGAGACTCAGTTATATGTTTTCTGTAGGCTCAGGCACACGCACCCTCACCTCAGCCAGCATGCGTCTGGTCCAGTTCTGCAGACGGGGAGCCGAGGGAAACGTGAGGGTTGGTGTGGAGAGGGAGAACGGTGTCGTCGACTTGAAGGCGTTTGATCAGTCCATGCCGTCCACCATGAGAGAGTTCTTGGAACTGGGAGAGAAGGGCATGGAGTGCGCCCAGAGAGCCGAGTCCAGTGGCAAGTGTGTGCTCCCTCACTCCGATATCCAGCTCCTGTCTCCAGTCACCGGCCCAgacaaggtggtgtgtgtgggtatgaACTACAGAGACCACTGCCTGGAGCAGAACGTCCCCATCCCCACTGAGCCCATCATCTTCAACAAGTTCCCCTCCTCCATCACGGGCCCCTACGACAACATCCACCTGCCAAACAAGAGCCAGGAGGTGGACTGGGAAGTGGAGCTTGCCTTTGTGattggaaaaaaaggaaagcacaTAAAGGAAGAGGACGCTCTCCGTCACGTTGCCGGCTTCACCGTAGCCAACGATGTCAGCGCTCGTGACTGGCAGATGGAGAAAAACAGCAAGCAGTGGCTTCTGGGAAAAACATTCGACACATTCTGTCCACTAGGGCCTGCCCTTGTTACCACAGAAGCGCTGAAGGACGTCCACAACCTGGGGATCCGGTGCCTGGTTAACAGTGACGTAGTTCAGGACAGCAACACCAATCAGCTGATCTTTAAGACGGAGAAGCTGGTGGCGTGGGTCTCGCAGTTTGCGACTCTGTGCCCAGGCGACGTGTTTCTAACAGGCACTCCTCCAGGGGTGGGTGCGTTCAGAAAGCCACCCGTCTTTCTAAAGAAAGGAGACGTCGTGGAGTGTCAGATTGAGGAGATCGGGTCCATCCGAAACACAGTGGTGTGATTCCAACATGGTCGACTGACTTTATCTGAGCTACATGGATGAAAAAATTACTGattcacattttcactgttgcaATGCTTCAATGTCTAAGATGCTTCTGAAATTTTAATCTGAATCATGTGCACTACAAATGATTTGCCCACAGGTCAGCTGCTGTGATTTTCCAGGAGATGGCGCTCTGCTGATTATGTTTAGGGAGAAAcagtagttgttttttttttttttttggcttaagGCAGGgtttttgtcattatttccaGATTTTTCTGTGTTCTGGTTTGTTACTAATTTTAAATGTGTGGAAAACAATGGAAAGTCTAACAACAATGATGTAGAACCTTCACTTCCTAAGTTTTACTTAGACAAGAGAATATCCATATGCATCTCTATGTTTTCCTACAGtttcactgttcctttaaattcAATACCAGTGCATGGACCCAATGAAACACAAGAACATTTTCATATCTGTGAAACTACTTAAAATACTCAAATAGCATTGAGTAAATAAAATCTGAGAACTGA

Function

symbol description
fahd2b Predicted to enable hydro-lyase activity.

NR:

description
fumarylacetoacetate hydrolase domain-containing protein 2-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945706.2 False 1559 mRNA 0.47 8 26096883 26107903
XM_026945707.2 False 1637 mRNA 0.46 8 26096658 26107903
XM_034307033.1 True 1698 mRNA 0.46 8 26096658 26107903
XM_034307034.1 False 1620 mRNA 0.47 8 26096883 26107903

Neighbor

gene id symbol gene type direction distance location
LOC113546011 LOC108265344 coding upstream 9192 26082899 ~ 26087466 (+)
antxr1a antxrl,antxr1a,antxr1,LOC108265351,LOC107661337,LOC107710819 coding upstream 107496 25952967 ~ 25989162 (+)
LOC117595683 NA coding upstream 156027 25938646 ~ 25940631 (+)
LOC113537824 NA coding upstream 177395 25917747 ~ 25919263 (+)
disp3 disp3,LOC107710822,LOC107553125,LOC107678473,LOC107562651 coding upstream 292216 25762965 ~ 25804442 (+)
npc1l1 npc1l1 coding downstream 216513 26324416 ~ 26341597 (+)
myl7 myl7,LOC107753162,LOC107554405,LOC107703146,LOC106580582 coding downstream 260512 26368415 ~ 26371797 (+)
tbc1d10aa tbc1d10a,LOC108265670,LOC108441901,LOC106579927 coding downstream 265907 26373810 ~ 26397861 (+)
aplnra aplnr,LOC108441910,LOC107753098,LOC107703172,LOC107687998,LOC107550977,LOC107554406,LOC107712463 coding downstream 327613 26435516 ~ 26437704 (+)
hpdb hpd,LOC108264894,LOC108441909,LOC107723232 coding downstream 360416 26468319 ~ 26475491 (+)
G139235 LOC108265343 non-coding upstream 60525 26032594 ~ 26036133 (+)
LOC113546140 NA non-coding upstream 146209 25948849 ~ 25950449 (+)
G139172 NA non-coding upstream 281617 25810175 ~ 25815041 (+)
G139166 NA non-coding upstream 413567 25672518 ~ 25683091 (+)
G138961 NA non-coding upstream 645081 25448615 ~ 25451577 (+)
G139551 NA non-coding downstream 404989 26512892 ~ 26519482 (+)
G139647 NA non-coding downstream 770733 26878636 ~ 26899417 (+)
G139653 NA non-coding downstream 783174 26891077 ~ 26894530 (+)
G139686 NA non-coding downstream 999026 27106929 ~ 27108878 (+)
G139756 NA non-coding downstream 1231090 27338993 ~ 27341506 (+)
LOC117597866 NA other upstream 179851 25909575 ~ 25916807 (+)
egr3 egr3 other upstream 537927 25551894 ~ 25558731 (+)
LOC113533115 gnrh1 other upstream 962400 25132741 ~ 25134258 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 2082877 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 2201933 23890416 ~ 23894725 (+)
car15 LOC108264895 other downstream 292288 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 454917 26562820 ~ 26567932 (+)
rimbp2 rimbp2,LOC108414005 other downstream 518150 26626053 ~ 26729946 (+)
fam160b2 LOC108265858 other downstream 1075118 27183021 ~ 27261741 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other downstream 1159272 27267175 ~ 27295337 (+)

Expression


Co-expression Network