tti2 (tti2)


Basic Information

Item Value
gene id tti2
gene name tti2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 27363523 ~ 27370047 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945720.2
GAAGGCGGGATTTGTAGCGTAAGCCTTGGAGAATGATGTCACTATCCTGCGACTACTGTCGAGAGCAAAATAAAGGCTAGTTTAACCATGTCTATTAGCTGAAATAGATAAATATACTACAGAAATGTCTTTAGAGTGCCTTCTCCGTGATTTGAGTATTAAGTCTGAAACTGAGGATGtcatttctgttctttctgaAATCCGTGAACGCTTCGAGGAGAGAAATTCAGACAAGACGAGGATCCTGAGTCGCACAGCCGAGGTGTTCAGGGTCAGTTCCCGGTCCTGGCTCTTCCCCGAGCTCAGCTCACACAGCTTCCGGAGCACTTATACAGACCTGGTGAAGTCCTGCACTGAATACGCCGCTTTGCCTTTGTGTGACACGGACAGCGGGACTTTACCGGCCACTAGCTATGAAGAGATCCCGGGAAAAGCCGTGGCGGTCGGGGGAGCTCTGCTGGCGCTGAGCGCTCAGCTCGGAGAGGCGGTGAAGTGTGGAGACTCAGGGGCGAAggctctcattcacacactcagtcctgtgctgtgtgtcttctccatcacacacgtGCAGAAGCAGGCGTGGACTGATGGATCGTCCAGGAGATGTGCTGTGGAGCTGCTGAGGAGCACAGTCACAGCCAGTGGGAGCAGCTCAGTGCAGGAGCTGCTGTGTGGAAGTGATGGAGGAGCAGCACCCTCAGGGATCCTGGGATCCATCCTGGACACACTGCAGCCTGACATGACCAAGGAAACCTGGAAGCGAAACGAAGCAGTGAAACACGTCTTCTCTTGGCTGCTGGTGCAGGTCGGGCGTCCCTGCTTAGCCGAATACCTGGACAAGGTTTTCCCTACGTCTCTGCTCATATCAGACGACTACCGGACGGAGAACAAAGTCCTCGGAGTGCACTGCCTTCATCACATCGTCCTTCATGTGCCTGCTGCTGATTTGAGGCAGTTTAACCGAGCTCAGGTGCTCTACGACGCCCTCTACAATCACCTGTACACGTCTGAAGCTCCGCTCATACAGGTGGTTCTGCCGTGTCTTATAGTTTTACTCTCAGTCCTTGAGAAGCCTCTCGGCCACGCAGGATTACCCCGAACTCCGAACCGCTGTGACAGCGTTCTCCGCCTCATTTTAACGCACATGGAAATGGAGCACAAGCTCGCGCTGCGCCGGATCTACGCCAGCAACCTCCTGCTGTTCGTCGAAACGATGGGTATAAGCATCGCTCGGCATCTGAAGAGGCTGGAGAGGGTGATTGTGGGATATCTGGAGGTCTCTGATGCTCCTGAAGAGAAAGCCAGGCTCAGCATACTCGAGGTTCTAGAGAGGACGATACAGGTTGCCTGGCCGAGgatggaGTGCAGGCTGTCTGTCCTGGCTAGGAGCTTGCTCAGGTTCCTCGTGGACGTCTCTGCAGAGTCTCTGGCTCCTGAGCTCACTGAGGAGCTGTCGAACAGAGCGACACGCTGCCTGCTGCTGCTCGATCACTGCTCACACGGCAGACTGAGGGTGGAGCTGAAGGAGGTGgacagcagctgtgtgtgtgagcgagtgttAAAGTGCATACAGGATCTTACGCAGGCAGAGTGTGTGAGCTGAGTGTCCCTGATGCACGATTCCTCACACTGTAAATGCCAAACGATGGATCTGAAGCCAGTGAGATCTAATCAGGGccatctttttcatttattttgttagtATTAAgaataagattattaaatgcATCAGGTATGTTTTTATGGACAGCTGAATAAATTAAATGGACTTCTAAGGTgacccttttttttctgattagagCTCCTGCTCAGATTCTTGGAAAGTCTGGAAAAGTTGCAGATGTTTCTGTAATATGGATTCGGGCCACAAACGTTCTCAATCAATTGTAGACTTTTATTCTCTAAACTAATACGCATCATGTTCACGGTTTCCCTTCTGTACGCtgactaagctttaaaatgttttttgtatgaATGTAGTCAAATCAAGTCTCAGTTCcagaaaaacatttcttttacaaATCTGATtagatcctgtaacaaatggtagagattttaatgttttctctgatatcctatccaacattatttttatttatttatttatttttgttggttTCAgcccgatactgatactgatactgggtattggatcagtgccatctctattAAAATGTCTATGAAACTCATTAAAgggatgaaataaaacattcagcTGCA

Function

symbol description
tti2 Predicted to be part of ASTRA complex. Predicted to be active in centrosome; cytosol; and nucleoplasm. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human TTI2 (TELO2 interacting protein 2).

NR:

description
TELO2-interacting protein 2 isoform X1

GO: NA

KEGG:

id description
K23115 TTI2; TELO2-interacting protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945720.2 True 2220 mRNA 0.49 7 27363523 27370047

Neighbor

gene id symbol gene type direction distance location
LOC113546107 slc18a1,LOC106527823,LOC107702874,LOC107591929 coding upstream 2661 27347381 ~ 27360862 (+)
ppiaa ppiaa,LOC108265559,LOC107691558,LOC107756846,LOC107722998,LOC107702873,LOC108411171,LOC107591938 coding upstream 25355 27333371 ~ 27338168 (+)
ogdha ogdha,LOC108411168,LOC108265558,LOC107756845,LOC107691557,LOC107566960 coding upstream 31975 27297892 ~ 27331548 (+)
ccdc92 ccdc92 coding upstream 262773 27079096 ~ 27100750 (+)
ncor2 ncor2,LOC107753125,LOC107684513,LOC106585520 coding upstream 373941 26889333 ~ 26989582 (+)
nr5a1a LOC108266031 coding downstream 140656 27510703 ~ 27530908 (+)
fgf17 fgf17,LOC107698084,LOC107678395,LOC103025711,LOC107721084,LOC106585328 coding downstream 211761 27581808 ~ 27588404 (+)
tubb2b tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 coding downstream 228367 27598414 ~ 27601456 (+)
fkbp15b LOC108265163 coding downstream 308868 27678915 ~ 27698868 (+)
ube2d4 ube2d4,UBE2D4,LOC101482088,LOC101172587,LOC108236573,LOC107393720 coding downstream 452490 27822537 ~ 27831378 (+)
G139756 NA non-coding upstream 22017 27338993 ~ 27341506 (+)
G139686 NA non-coding upstream 254645 27106929 ~ 27108878 (+)
G139647 NA non-coding upstream 464106 26878636 ~ 26899417 (+)
G139653 NA non-coding upstream 468993 26891077 ~ 26894530 (+)
G139551 NA non-coding upstream 844041 26512892 ~ 26519482 (+)
G139807 NA non-coding downstream 190343 27560390 ~ 27569085 (+)
LOC113546137 NA non-coding downstream 233870 27603917 ~ 27610560 (+)
G140170 NA non-coding downstream 240900 27610947 ~ 27611335 (+)
G140236 NA non-coding downstream 402397 27772444 ~ 27773644 (+)
G140237 NA non-coding downstream 404690 27774737 ~ 27851332 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other upstream 68186 27267175 ~ 27295337 (+)
fam160b2 LOC108265858 other upstream 101782 27183021 ~ 27261741 (+)
rimbp2 rimbp2,LOC108414005 other upstream 633577 26626053 ~ 26729946 (+)
LOC117597788 NA other upstream 795591 26562820 ~ 26567932 (+)
car15 LOC108264895 other upstream 901202 26400191 ~ 26462321 (+)
nr6a1a nr6a1,LOC107563838,LOC107721088,LOC107678448,LOC107698081,LOC107753334 other downstream 35403 27405450 ~ 27490461 (+)
G139781 NA other downstream 58680 27428727 ~ 27429477 (+)
dbnlb dbnl other downstream 468198 27838245 ~ 27859702 (+)
arpc5la arpc5la,LOC108265305,LOC108411248,LOC107571143,LOC107753090,LOC107550963,LOC107676626 other downstream 649137 28019184 ~ 28027450 (+)
slc7a4 slc7a4 other downstream 1378787 28748834 ~ 28803174 (+)

Expression


Co-expression Network