orai1a (orai1,LOC108414442,LOC106585507)


Basic Information

Item Value
gene id orai1a
gene name orai1,LOC108414442,LOC106585507
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 30206508 ~ 30213445 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945775.2
GTAACGTGCAGAACAAGAAAACAGAAGGCGCAGATCGCTAGAACTGACTGTCAAAACAGCGCTggactacattacccataattccACATCGCGGACATCACGGCAGcgcggtgcattgtgggtggTCCGGTTTGTAGTTTTTGACCTGACAGCACGGCGCGGTGTCTAAAGCAAGGAAACAACTGTCAGTTAGTtttccagagagagaaagagagagagaaagagagagagactctctGTTATGCCCCGACATCGACGATTTAACTGCGATTCTCGGTTAAAGGGGAAACTCTGAGTCGGAGTAAGAAGTTTGTAAGAAGCGGAAGCTGGCTGGAGAATGAGTTTAAACGAGCACTCTCTGCAGGCTCTGTCATGGAGAAAGCTGTATCTGAGCCGAGCGAAGCTGAAGGCCACCAGCAGGACCTCAGCTCTGCTCTCCGGCTTCGCCATGGTGGCGATGGTGGAGGTGCAGTTGGAGCGGGATTACGAGTACCCGCCCCTCCTCCTGATCGCGTTCAGCGCCTGCACCACCGTGTTGGTTGCGGTCCACCTCTTCGCTCTGATGATCAGCACCTGCATCCTGCCCAACATCGAGGCCGTGAGTAACGTGCACAACCTGAACTCGGTGAAGGAGTCTCCTCACGAGCGCATGCACCGCCACGTGGAGCTCGCCTGGGCCTTCTCCACCGTCATCGGCACCTTCCTGTTCCTCGCCGAGGTCCTGCTGCTCTGCTGGGTCAAGTTCCTCCCGCAGAAAATGGTGCAGACATCCAAGAACGGAGAGACCAACACGCCAGCCGCTAACTCCACCGGGATCAGCGCCGGGGAGGCCGCCGCCTACGCCTCCACCTGCATCATCGTCCCCTGCGGCCTCGTCTTCATCATCTTCGCCGTCCATTTTTACCGCTCGCTCGTCAGCCACAAAACCGACCGGCAGTTTCAGGAACTCGAGGAGCTTTCCAACATCACCAGGCTTCAGAACCAACTCGACAATCGAGCGGAGGCGCCCAACATCCAAAACGCTCCTGCGCTCTTCCCCTGAACTCTCACCATGGCAACGGGATCGCGAATTAGCATAGCGCTAGTGTCAGCCAAGCAAATGTCAcgttaatgtttttataaacgATGCCAAGTTTTTATAGAGACTCGTTACGCTAAAAGAATCgactctcttcttcttcttcttccttgtgacatttttctgttaaaGTTTTGGTTTCAGAAGTGGGCGGGGCTCTATAAAGTAGGAGCTAgcttacatcatcatcatcatcaagttaGCTATCTGTAATTACTTTGTTTAGGTAAAGTTATGTAGCTAGCAATAGTGAGGCTAGATTTTTACATCCAAGTGTAATGCTATTGTCCAAACTATGTTATAGTCGCAGTATCACAGTAACTGTTGCCATGGATGATGGATAGCTAACTTTAGCCCTagatgctagctagcattatcaTTCTGGTATCATGTTCTTGCTGAGGTAAAGGAAATGAACGTTGATGTACAGGAGGCCAAATCAGAGTTTTGCTGATTAAAGTTGTGTAAATTTG

Function

symbol description
orai1 Enables identical protein binding activity and store-operated calcium channel activity. Involved in calcium ion transport; positive regulation of adenylate cyclase activity; and positive regulation of calcium ion transport. Located in cytosol and plasma membrane raft. Is integral component of plasma membrane. Implicated in immunodeficiency 9 and tubular aggregate myopathy 2.

NR:

description
PREDICTED: calcium release-activated calcium channel protein 1

GO: NA

KEGG:

id description
K16056 ORAI1; calcium release-activated calcium channel protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945775.2 True 1551 mRNA 0.51 2 30206508 30213445

Neighbor

gene id symbol gene type direction distance location
rnf34a LOC108264913 coding upstream 24954 30177482 ~ 30181554 (+)
LOC113546114 NA coding upstream 45970 30133936 ~ 30160538 (+)
lrrc75ba lrrc75ba,LOC108264915,LOC108414797,LOC107753104 coding upstream 74768 30110797 ~ 30131740 (+)
hnf1a hnf1a,LOC108412048 coding upstream 259902 29932966 ~ 29946606 (+)
LOC113546086 NA coding upstream 273547 29930249 ~ 29932961 (+)
LOC113523739 LOC108263642,LOC108270747,LOC108273691,LOC108270753,LOC108261292,LOC108274210,LOC108257668,LOC108261406,LOC108273546 coding downstream 102383 30315828 ~ 30322195 (+)
selenop LOC108264920,LOC108264932 coding downstream 164168 30377613 ~ 30382370 (+)
G141367 NA non-coding upstream 3743 30189467 ~ 30202765 (+)
G141366 NA non-coding upstream 34505 30171653 ~ 30172003 (+)
G141348 NA non-coding upstream 41517 30164393 ~ 30164991 (+)
G141328 NA non-coding upstream 107666 30043926 ~ 30098842 (+)
G141324 NA non-coding upstream 163115 30042842 ~ 30043393 (+)
G141375 NA non-coding downstream 340 30213785 ~ 30214376 (+)
G141350 NA non-coding downstream 1041 30214486 ~ 30214821 (+)
G141349 NA non-coding downstream 1473 30214918 ~ 30215730 (+)
G141377 NA non-coding downstream 7276 30220721 ~ 30220947 (+)
G141454 NA non-coding downstream 69695 30283140 ~ 30283339 (+)
ggt5a LOC108264907 other upstream 165652 30028861 ~ 30040856 (+)
G141234 hps4 other upstream 277354 29910029 ~ 29929154 (+)
LOC113546064 hps4 other upstream 277438 29903513 ~ 29929070 (+)
LOC113546008 LOC108264940,LOC108412050 other upstream 330228 29860188 ~ 29876280 (+)
LOC117597881 LOC108265326 other upstream 854746 29325934 ~ 29351762 (+)

Expression


Co-expression Network