ube2d4 (ube2d4,UBE2D4,LOC101482088,LOC101172587,LOC108236573,LOC107393720)


Basic Information

Item Value
gene id ube2d4
gene name ube2d4,UBE2D4,LOC101482088,LOC101172587,LOC108236573,LOC107393720
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 27822537 ~ 27831378 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945829.2
CGCGTAGTATCGCGAGAGTAGCGCATTGCTCTCTAGGCAAAGCTGTCAGAGAGTGAAGGTTTGAGAAGGTGGTTAAGAATTACTGAAATCCTACTCTGTCGTTTCTGTGAAACTGCGTAAATGTTGCGATCTGTGCTCTCGTAGAGGTGTTTTTACAGCCGGGAGAAGCATAATAACGCGTTAATAAGCCGAATTGTAACGGAGAAAGCGAGTGTtatccagctagctaacaataaaAAACAGGCAAATGGCGTTGAAAAGGATCCAGAAGgaGCTGACGGATCTACAGAGGGATCCTCCTGCCCAGTGTTCAGCCGGACCAGTGGGAGAAGACTtgtttcactGGCAAGCTACGATAATGGGGCCGAACGACAGTCCTTACCAAGGTGGCGTCTTCTTCCTCACCATCCACTTCCCCACAGACTACCCCTTTAAACCTCCCAAGGTCGCATTCACGACAAAAATCTACCATCCCAACATCAACAGTAACGGCAGCATCTGCCTCGATATCCTGCGCTCGCAGTGGTCTCCTGCACTCACCGTATCGAAAGTTCTGCTCTCCATCTGTTCCCTGTTATGTGACCCGAACCCTGATGACCCTCTAGTGCCCGAGATCGCACACACGTACAAAGCCGACAGAGAAAAGTACAACAGACTAGCGAGAGAATGGACGCAAAAGTACGCCATGTGAGAGGAGTGCGTACGTCTGCACAAACACGGCGCAGAGAGCGAACGCACAGAGGAACctgttttaacttttttaaacgCGAGGAGAacgaaagagcgagagagagagagagagagagagagggttagATATGGATCAACACCGACACTTTGGCTGGGAGGAAGCAGAGAGAGCGGAGAGACCCGAGAACACCACCGCACACCGGCTGTGCGCCGTTATCTCAGAGCCGCGCCCGGAATTCCGCACAGCTTGGAAAACACTCGGGAAAACCACAAACCCGGGAAATTAGACTTTTCTGACTTACTTTTGTGACATATTGTTTCGGAGTGTTTCTCAGTGTCTTGGGTCGCTGAACACCGGAGATGCAGGCGAAAGGCTTCGCTCACGTACACACCGTCTCCGGGCATTTTCTGTACAGATCGCGcgtgtggttgttttttt

Function

symbol description
ube2d4 Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in protein K48-linked ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2D4 (ubiquitin conjugating enzyme E2 D4 (putative)).

NR:

description
ubiquitin-conjugating enzyme E2 D4

GO:

id name namespace
GO:0035519 protein K29-linked ubiquitination biological_process
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0085020 protein K6-linked ubiquitination biological_process
GO:0031398 positive regulation of protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0044314 protein K27-linked ubiquitination biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945829.2 True 1129 mRNA 0.51 7 27822537 27831378

Neighbor

gene id symbol gene type direction distance location
fkbp15b LOC108265163 coding upstream 123669 27678915 ~ 27698868 (+)
tubb2b tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 coding upstream 221081 27598414 ~ 27601456 (+)
fgf17 fgf17,LOC107698084,LOC107678395,LOC103025711,LOC107721084,LOC106585328 coding upstream 234133 27581808 ~ 27588404 (+)
nr5a1a LOC108266031 coding upstream 291629 27510703 ~ 27530908 (+)
tti2 tti2 coding upstream 452490 27363523 ~ 27370047 (+)
arid5a LOC108265471 coding downstream 44817 27876195 ~ 27897258 (+)
gins4 gins4,LOC107678389,LOC107747805,LOC107698091 coding downstream 67195 27898573 ~ 27904632 (+)
polr3d polr3d coding downstream 95258 27926636 ~ 27933229 (+)
olfml2a olfml2a,olm2a coding downstream 122904 27954282 ~ 27983083 (+)
LOC117597849 NA coding downstream 173705 28005083 ~ 28015288 (+)
G140236 NA non-coding upstream 48893 27772444 ~ 27773644 (+)
G140170 NA non-coding upstream 211202 27610947 ~ 27611335 (+)
LOC113546137 NA non-coding upstream 211977 27603917 ~ 27610560 (+)
G139807 NA non-coding upstream 253452 27560390 ~ 27569085 (+)
G139756 NA non-coding upstream 481031 27338993 ~ 27341506 (+)
G140244 NA non-coding downstream 99345 27930723 ~ 27942087 (+)
G140240 NA non-coding downstream 99832 27931210 ~ 27935818 (+)
G140307 NA non-coding downstream 293228 28124606 ~ 28124811 (+)
G140311 NA non-coding downstream 305233 28136611 ~ 28136832 (+)
G140318 NA non-coding downstream 324330 28155708 ~ 28155911 (+)
nr6a1a nr6a1,LOC107563838,LOC107721088,LOC107678448,LOC107698081,LOC107753334 other upstream 332076 27405450 ~ 27490461 (+)
G139781 NA other upstream 393060 27428727 ~ 27429477 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other upstream 527200 27267175 ~ 27295337 (+)
fam160b2 LOC108265858 other upstream 560796 27183021 ~ 27261741 (+)
rimbp2 rimbp2,LOC108414005 other upstream 1092591 26626053 ~ 26729946 (+)
dbnlb dbnl other downstream 6867 27838245 ~ 27859702 (+)
arpc5la arpc5la,LOC108265305,LOC108411248,LOC107571143,LOC107753090,LOC107550963,LOC107676626 other downstream 187806 28019184 ~ 28027450 (+)
slc7a4 slc7a4 other downstream 917456 28748834 ~ 28803174 (+)
LOC117597881 LOC108265326 other downstream 1494556 29325934 ~ 29351762 (+)
LOC113546008 LOC108264940,LOC108412050 other downstream 2028810 29860188 ~ 29876280 (+)

Expression


Co-expression Network