npc1l1 (npc1l1)


Basic Information

Item Value
gene id npc1l1
gene name npc1l1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 26324416 ~ 26341597 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945830.2
TTATTCCTACCTCCTCACGTATCCTTGGATACCAGATAATCCCAtcccctcttctctctctctcttttctctctctgttggaTGTAACACTCCAGTCACCTGGCATTTACTTTCAGAAAGTGACAGAATGGGGAACTACGGCTTCATCTTTCTAACACTGGCTGCATATTTGATGCTTTGTGATGCTCAGCCTCAACCTGGTTTCTGTGTGATGTATGATGAATGTGGTCTAAACCCCAACGTAGAAGGGTCCCTGATCCCTGCAAGAATACCCTGCAAAAGTTATCGGCAAGCAGCTCCAGTGGTAGGCCAACACTACCAGCTGTTGAAGCAGGTTTGTCCTATGTTGGACAGAGGTGAGGGTGAAACATTTGCCTGCTGCACCAGTGCCCAGCTGCATGCCCTGCAAAGCAGCTTGTCACTATCCAAAGTTGTGCTGCTCCGATGCCCGTCCTGTGCTTACAATTTTGCCCACCTGCACTGCATCACCACCTGCAGCCCCAACCAGAGCCAGATAGTCAACATCACCAGAACTGAGAATGTCACGGTTGGCACAGTGTCGAAAGATGGTGTAGTTGCGTACCAGGCCTACATTTCCACCAGCTTCTCTGATGCGTCCTTCAGGTCCTGCCAGAATGTGCGGATTCCAGCAACAGGTGGATATGCTATCGCTACCATGTGTGGCCGATATGGTCATAAGCTGTGCACGCCTCAGCGTTGGTTAGATTTCCAGGGTGACACAAGCAATGGTCTGGCTCCACTTGATATTGATTTTAGACTCATACCACCTGGCGAGACCTCACAGGTACCAGAAGGAATGGTTCCATATGCAGGCTTGGCTATAGGCTGTAATGAAACATCACCCACTGGGGAAGAAGAGTGCTCTTGTCAGGACTGTCTGGATGCTTGCCCTTCAGTTCCTCCACCTGAACCTATACCTGAGAAGAACAGCTTCATGATCGCTGGAATGAACGGTGTTCTCTTCATCTGCCTCcttgtttttataattttatccatCCTGTTCCTCGGTTTCCTTGTGGCTAAGTTTGTCTTTCAGACCCAGAAGAGTAAGATGTCAAAAGGGGGCAAGGACAGAAATGCAAATGAAGTAGACTATAACAAAACAGTGGACCCCAAAGATGTCACATGCTCAGATCGAGCAAGTCTGGTCACTCAAGAATTCCTGGGTTCACATTTTCAGACTTGGGGAACTACAATGGCTAGGTACCCAAAGACCGTGCTCATTGTATGTCTGATTGCAGTGGTAGCATTTTCAAGTGGGCTGATGTACATAGAACTGACCACTGATCCTGTTCAGCTTTGGTCGGCTCCTGAAAGCCGTGCTAGGCGTGAGAAGGACTTCCATGAccagcattttttccccttctttcgAACCAACCAGCTGATTCTGACAGCTCCAGGCAGAAACGGCTATATGTATGACTCCTTGTTATTTGGCAGAACAAACATCAGTGGCCTCATCTCTAAAGACCTCATTTTGCAACTACTGGAGCTTCAAGAGAGAATTCAGGCAATCGAGTTCTGGTCTGACGATCTTAACAAAACTGCTAGCCTTAAGGATGTGTGCTATGCTCCACTCAATCCAACAAACCCTGCTCTTTCTGACTGTGCTGTCAACAGTCTTCTTCAGTACTTCCAAAACAGCATTGTTAATCTGAATGCAAAGGTTAACATGACTGAGCTAGGTGTGACTAAAGAAGTTGACTGGAGAGATCATTTTATCTACTGCGTCAACTCTCCGTTGTCTTTTAAAGACATCACTGCACTTGGCATGAGCTGCATGGCTGACTACGGAGGACCTGTGTTTCCTTTCTTGGCTGTGGGAGGATATGAaaATGAAGACTACACAAATGCTGAAGCATTCATCCTCACTTTTTCTCTGAATAACTATCCACGAGAACACCCAAAGTTCAAAGTGGTGCTAGAATGGGAATCAAGATTCTTGGACATAATACAGGAGTACCAGAAAAATCCTAGCACAAACTTTACGTTCGCTTACATGGCTGAGAGATCTTTAGAAGATGAAATCAACAGAACGACAATAGAGGACATCCCCATCTTTATGATCAGCTATGCagttatttttttgtacattgcCATGGCTCTGGGGGAATACTCATCTTTTAAACGCATTCTGGTGGACTCAAAGTTCCTTGTTGGCCTAGGGGGTATATTGGTAGTAGGCTGCTCGGTCCTGGCCTCCATGGGTTTCTATGCTTGGATAGGAATCCCGTCCTCGCTAGTCATTCTGCAGGTGGTCCCCTTTCTAGTCCTGGCTGTTGGTGCTGACAACATCTTCATCTTTGTTCTGGAGTATCAGAGAGACGTGCGCAGACCAGGAGAGCAGCGGGAGGAGCAGATTGGCCGAGTCCTTGGAAATGTCGCTCCCAGCATGCTGCTTTGCAGCATGTCAgaatctgtctgtttctttttggGTGGTTTGAGTACAATGCCCGCCGTGAAGTCTTTTGCGCTCTATGCTGCTTTAGCAGTCCTCATGGACTTTGTGCTGCAGATGACTGCGTTCGTGGCACTGCTGTCTCTCGACGCTCGGCGACAAGATGCAAATCGCTGTGAAATAGCTTGCTGTGTCACTGTAAAGAAACCACGTCCTTCCAAACCCAATGAGGGCTTCCTTCTCCCTCTAATGCGGAAATATTACGCCCCAGTACTGCTCTACCCCGTCTCCAGGATACTAGTGATCTTGCTGTTCCTCTGCATGTTCTGCGCCTCCATCTTCCTTATGTTCCATGTGAAGGTGGGCTTGGATCAGGAGCTGGCCATGCCATCAGACTCTTACATGCTGACATACTTTCAATACCTGTACAAGTACTTTGAGGTCGGGGTTCCTGTATATTTTGTCACAACAAGAGGCTTCAACTTCTCAAATGTCAATGGCATGAACGCAGTGTGTTCCAGCGTCGGCTGTGACCAGTTCTCTCTCACCCAGAAGATCCAGTATGCCACAGCGTTTCCTAACAGATCCTACTTGGCTATCCCAGCATCCTCCTGGGTAGATGATTTCATTGACTGGCTGAATCCTCAAACCCGATGCTGTCGGCTTTACAGCTTCGGACCCAATGCAGGGAATTTCTGTCCTGCCACTGAGAGTACCTTGATGTGTTTGACGAAGTGTATGAGCAGCCCACCCAACGGCATCCTGCGTCCATCCGTGCAGGAGTTCAACGAGTATCTCCCCAGCTTCCTCTCCAACCGGCCAGACTTACAGTGTCCCAAAGGTGGGTTGGGGGCTTATGACACATCTGTGGTCCGGGACAGTGTGACGGGAGAAATAATAGCATCTCGGTTCATGGCATATCACACTCCTCTCACTAACTCGCAGGAGTTTACAGAAGCTTTGCTCATGGCGAGAGAAATCGCCCACAACATCACGATGACTATGAGAAATGTGCCAGGCACGGCACCTGACTTCGAGGTCTTCCCCTATACCGTGACGTACGTGTACTATGAGCAGTACATTGGCATTGTGTATGAGGGCCTGGTGAACCTCTCACTCTGTTTGTTACCAACCTTCGTGGTGTGCTGCATCCTGCTCGGCATGGACCTGCGCTCAGGTCTCCTAAACCTCCTCACCATAGTGATGATCACCGTGGATACAGTGGGCGTCATGACGCTGTGGGGCATCGACTACAATGCCGTGTCTCTAATCAACCTTGTCACGGCTGTGGGGATTTCAGTGGAGTTTGTGTCTCATCTAACGCGCTCCTTCGCCCTGAGCACTTTGCCCACTAAGGTGGAGAGAGCCAAAGATGCTACGGCTAAGATGGGCAGTGCGGTGTTTGCTGGTGTCGCTATGACCAACCTGCCTGGAATCATCGTGCTGGCATTCGCTAAAGCTCAGCTCATTCAGATCTTCTTCTTCCGGCTGAATCTGATCATCACACTTCTGGGAATGGCACATGGCCTCATCTTCCTGCCTGTGCTGCTCAGCTTCTTcggtCCATCTGTAAACAAGGCCGTGCTGCTGGAGCTTCAGAATAAAAAAGCCATGGAGATGGAGCAGCGCAACAAGGCAGTTTACGACAACGGTGGCTTTGAAAGAAACGAGAATCACATTGTTTCAGAGCCCGCATATGCCACAACGCTGCCCAATGCTGCACCAGCACTGCCAGAACAACTGGAACAGGAGAAGTCACCAGAACCAAGCACAGTTGGGAACACCAACCATATCCAGACCAACACTTTTCTATAGTTCTGGGATGACattcctcttcttctcctcttcctcctgcttcGAGATCGTTGGCAGAGAGAAAAGGATGGTTTATTAACAATGGGACACTGTCAGTACACAATGGTGCAATATAAGGGTCAGGAGAACTGCTTTATAGGGATAAAGCTTTTTTCACCTCAGTTGTGTGTTTTACCTGCTCTAACACACGGTCACTAAGTAGAAGCTGCGCTTGGTGATGGAAATATTGCTTGATCATACAAGTTAATTTTCCATATCACAACACCTGctggacatgtttttatattaatttgtaaatgatCCATCAAAAATAGTCACACTGTCAAGATATGGTGCATTAGGCTTAAATATACATTCACCGATGTACGTATGGCTACTGTTTTATAAAACGCTGACATTTGAGAGGTATCACTTGAACTGTATGTCCAAATCTGGTCTTTGGCtatttacacaaaaacaaaagtagcTATGGACCTTAAAGGATTGAAAATAGATATTGTGCAATTTGATATAGCTTTTAACAGCATTATTCGGCTATATGGCTTATAAAATTAATCACAGGCTACTTGACGTGATAAATATTGATGCTAGCAGATGATCACTTAAACATATGGAAACAAATGGAAACCTAGATGCACTAGCAGTGCTAATAAAGCTATTAGTTAAACAAACTAGCTAATAGTTTTGCTAGCAATGCCAGTGCTTCTATATTTCCATATCTTTCCAGCTAAGCACTGAGACAAAGCATcaactaaatattttttacatacgAGAAGATCAACCTGGAAAAATCTTACAGCAACTTTTGTCAAAGTTAAAAAGATGGCTAAAGTTAGCCTTCATCCAGCCAGTGTCCATCAGAGTCATGCTAGCCAGTTGCTAGCCAGTTATCACATATCTCAAAGTGATATTTGTGAATCTTACATAAAAACACAGCCTAATTAGCTATCTAATCTAAAAACAACTACCTGCTATCTATCAAGACAGTTTTCTCCATGGATTAACTATAAAGATATATAAAGTAGTGTTAATGATAAGAATATAGTGTGAGTTGAATATCTTGGTATTGCTTGCATAACTCCCTACGCCTAATTCTGCTTATTAGAGAACTTATTTATTAGAGCAGAACAAATGGCAAACAAACTGTCACCTCTAAGAGCCTTAACGTATGCTTCATAACAGTCTTACGCCTCTGTGAAGATGTTAACAGGCTGTTAACATCTTCTTGAATGTCGAATCTTGCATTCTCGTGTCAGCCTGCACTCACACTTCATTACAGTCTGACATGAGAGAGAAATtactttagaatttttttttttaaacatattttcttttttgttcattgtactgtattttatttaattccatTACATTTGCATATAATGTCTTTTTGTTGAAACACTACTGCTGCCATACACTCCAATGAAAAGTGCCTTCTGTTTGTGTCATGGAAGAGATTATAGCAATGAGAAATCATCAAACAACTGAGGTAGTGATATCTGcaagtcattaaaaaaagagatcCAATAAACAACATAACAGGACTGGA

Function

symbol description
npc1l1 Is expressed in liver. Orthologous to human NPC1L1 (NPC1 like intracellular cholesterol transporter 1).

NR:

description
Niemann-Pick C1-like protein 1

GO: NA

KEGG:

id description
K14461 NPC1L1; Niemann-Pick C1-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945830.2 True 5783 mRNA 0.45 19 26324416 26341597

Neighbor

gene id symbol gene type direction distance location
fahd2a fahd2b,LOC108440674,LOC107753161,LOC107703178,LOC107712485,LOC102211511,LOC105902774 coding upstream 216513 26096658 ~ 26107903 (+)
LOC113546011 LOC108265344 coding upstream 236950 26082899 ~ 26087466 (+)
antxr1a antxrl,antxr1a,antxr1,LOC108265351,LOC107661337,LOC107710819 coding upstream 335254 25952967 ~ 25989162 (+)
LOC117595683 NA coding upstream 383785 25938646 ~ 25940631 (+)
LOC113537824 NA coding upstream 405153 25917747 ~ 25919263 (+)
myl7 myl7,LOC107753162,LOC107554405,LOC107703146,LOC106580582 coding downstream 26818 26368415 ~ 26371797 (+)
tbc1d10aa tbc1d10a,LOC108265670,LOC108441901,LOC106579927 coding downstream 32213 26373810 ~ 26397861 (+)
aplnra aplnr,LOC108441910,LOC107753098,LOC107703172,LOC107687998,LOC107550977,LOC107554406,LOC107712463 coding downstream 93919 26435516 ~ 26437704 (+)
hpdb hpd,LOC108264894,LOC108441909,LOC107723232 coding downstream 126722 26468319 ~ 26475491 (+)
trnaa-agc NA coding downstream 134681 26476278 ~ 26476350 (+)
G139235 LOC108265343 non-coding upstream 288283 26032594 ~ 26036133 (+)
LOC113546140 NA non-coding upstream 373967 25948849 ~ 25950449 (+)
G139172 NA non-coding upstream 509375 25810175 ~ 25815041 (+)
G139166 NA non-coding upstream 641325 25672518 ~ 25683091 (+)
G138961 NA non-coding upstream 872839 25448615 ~ 25451577 (+)
G139551 NA non-coding downstream 171295 26512892 ~ 26519482 (+)
G139647 NA non-coding downstream 537039 26878636 ~ 26899417 (+)
G139653 NA non-coding downstream 549480 26891077 ~ 26894530 (+)
G139686 NA non-coding downstream 765332 27106929 ~ 27108878 (+)
G139756 NA non-coding downstream 997396 27338993 ~ 27341506 (+)
LOC117597866 NA other upstream 407609 25909575 ~ 25916807 (+)
egr3 egr3 other upstream 765685 25551894 ~ 25558731 (+)
LOC113533115 gnrh1 other upstream 1190158 25132741 ~ 25134258 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 2310635 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 2429691 23890416 ~ 23894725 (+)
car15 LOC108264895 other downstream 58594 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 221223 26562820 ~ 26567932 (+)
rimbp2 rimbp2,LOC108414005 other downstream 284456 26626053 ~ 26729946 (+)
fam160b2 LOC108265858 other downstream 841424 27183021 ~ 27261741 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other downstream 925578 27267175 ~ 27295337 (+)

Expression


Co-expression Network