hpdb (hpd,LOC108264894,LOC108441909,LOC107723232)


Basic Information

Item Value
gene id hpdb
gene name hpd,LOC108264894,LOC108441909,LOC107723232
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 26468319 ~ 26475491 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945832.2
CAGAGCTACGAGACCCTCCTTCTGTTTAAATTTGAGACGTGAACAAAAGCTGTATCTTAAACATCAGCAGCTGCAGCATACACCAAAATGACTTCCTACACAGATAAAGGTGAAAAGCACGAGCAGGGCAAGTTCATCAGCTTTGACCACCTCACTTTCTGGGTCGGCAATGCCAAGCAGGCCGCATCCTTTTACTGCAACAAGATGGGTTTTGAGCCTCTGGCATATTGCGGTCTGGAGACGGGCAGCCGTGATATCGTCTCTCATGTGGTTAAGCAGGGAAAGATTATTTATGTCTTCTCCTCTGCACTGAATCCTGGTAACAAAGAGATGGGGGAGCACCTGGTGAAACACGGAGATGGAGTCAAAGACATCGCCTTTGCCGTAGAGGACTGTGAATCCATAGTGCAGaaagcCAGAGAGCAGGGTGCCATCATCCTCAAGGAACCACATGTGCTGGAGGACGAGTTTGGCAGCGTGAAATTGGCTGTGCTGCAGACAtATGGAGACACGACTCATACACTagtggaaagaaatggataCACAGGACTTTTCCTCCCAGGATTCCACACTCCGCTCTTCCGTGATCCTCTCCTGGCTCAGCTGCCGAGTGGCCATCTAGATTTTATTGATCATGTGGTGGGAAATCAGCCAGATGATGAGATGGTGCCTGTGGTGGAATGgtacCAGAGGAACCTCCTGTTCCACCGTTTCTGGTCTGTAGATGATAAACAGCTGCAGACGGACTTCAGCGCTCTGCGCTCCATTGTGGTGGCTAACTATGAGGAGACAGTGAAGATGCCTATCAATGAACCTGCCTTTGGTAAACGCAAGTCCCAGATCCAGgagTATGTGGAGTATTACGGTGGCCCGGGAGTCCAGCACATTGCCATGAACACCTCGAACATTATCAAAGCTatccGTAATCTAAAGGAACGTGGCATGGAGTTCATGACTGTGCCAAATGCCTACTACCAGCAGCTCCGTGAGAAACTAAAAGACTCAAAGGTCAAAATCAATGAGGACTTGAGCATCCTAGAGGAGCTGCAAATTTTGGTGGACTACGATGATAAAGGTTACCTCCTCCAGATCTTCACCAAACCAGTCCAGGATCGACCCACTGTGTTCCTGGAGGTTATTCAGAGGAACAACCACCAGGGCTTCGGTGCAGGGAACTTCAAGTCTCTGTTTGAGGCTATCGAGGCAGACCAGCAAGCCAGGGGGAACCTCACTGTCCTCATGCCCAACGGGACATCAGAAAAAATCTGAAACAGGCTTTATTTACCAACATATCCactcatatttttatatatgaaagctgtgattttttttaagaatagtgctgtattctgtaaatgttttgtaGTATCACTGAGGTTATGCTTTTTAGATTATCCATGAAACTGTCTCTTTTACCAAACAGCTGTTTTTGAACATTGCCAGTGATAACATAAGCTCCTTATGGCTAGTGTGAGAAACCAAATTAGGTATTCATTTGTGTCTTATTAGCAGTGCATGTGTTATTTGTCTCTGGGGATTGTAAGTCCTTGTGTCTCCATCTGTTTATTCGAGCTTCCAGCAGACCAGATACCtggctgctttttttaaaaagcatgtaataaaaagcaaacagtaaaaataaatttatgttGACCTTGAATAATCATACTTCCTGATCTTCAGTAATGAAGTTATGTAAGAAAAATGTaacagagcaataaa

Function

symbol description
hpd Enables 4-hydroxyphenylpyruvate dioxygenase activity. Acts upstream of or within tyrosine catabolic process. Located in extracellular exosome. Implicated in hawkinsinuria and tyrosinemia type III.

NR:

description
PREDICTED: 4-hydroxyphenylpyruvate dioxygenase

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0003868 4-hydroxyphenylpyruvate dioxygenase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K00457 HPD, hppD; 4-hydroxyphenylpyruvate dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945832.2 True 1722 mRNA 0.45 14 26468319 26475491

Neighbor

gene id symbol gene type direction distance location
aplnra aplnr,LOC108441910,LOC107753098,LOC107703172,LOC107687998,LOC107550977,LOC107554406,LOC107712463 coding upstream 30615 26435516 ~ 26437704 (+)
tbc1d10aa tbc1d10a,LOC108265670,LOC108441901,LOC106579927 coding upstream 70458 26373810 ~ 26397861 (+)
myl7 myl7,LOC107753162,LOC107554405,LOC107703146,LOC106580582 coding upstream 96522 26368415 ~ 26371797 (+)
npc1l1 npc1l1 coding upstream 126722 26324416 ~ 26341597 (+)
fahd2a fahd2b,LOC108440674,LOC107753161,LOC107703178,LOC107712485,LOC102211511,LOC105902774 coding upstream 360416 26096658 ~ 26107903 (+)
trnaa-agc NA coding downstream 787 26476278 ~ 26476350 (+)
trnaa-agc_1 NA coding downstream 1314 26476805 ~ 26476877 (+)
trnaa-agc_2 NA coding downstream 1896 26477387 ~ 26477459 (+)
fzd10 LOC108266036,LOC108441898,LOC103024082,LOC107574912,LOC107659609,LOC107669258,LOC107723249 coding downstream 69166 26544657 ~ 26548008 (+)
piwil1 piwil1 coding downstream 116567 26592058 ~ 26602240 (+)
G139235 LOC108265343 non-coding upstream 432186 26032594 ~ 26036133 (+)
LOC113546140 NA non-coding upstream 517870 25948849 ~ 25950449 (+)
G139172 NA non-coding upstream 653278 25810175 ~ 25815041 (+)
G139166 NA non-coding upstream 785228 25672518 ~ 25683091 (+)
G138961 NA non-coding upstream 1016742 25448615 ~ 25451577 (+)
G139551 NA non-coding downstream 37401 26512892 ~ 26519482 (+)
G139647 NA non-coding downstream 403145 26878636 ~ 26899417 (+)
G139653 NA non-coding downstream 415586 26891077 ~ 26894530 (+)
G139686 NA non-coding downstream 631438 27106929 ~ 27108878 (+)
G139756 NA non-coding downstream 863502 27338993 ~ 27341506 (+)
car15 LOC108264895 other upstream 5998 26400191 ~ 26462321 (+)
LOC117597866 NA other upstream 551512 25909575 ~ 25916807 (+)
egr3 egr3 other upstream 909588 25551894 ~ 25558731 (+)
LOC113533115 gnrh1 other upstream 1334061 25132741 ~ 25134258 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 2454538 24011582 ~ 24013781 (+)
LOC117597788 NA other downstream 87329 26562820 ~ 26567932 (+)
rimbp2 rimbp2,LOC108414005 other downstream 150562 26626053 ~ 26729946 (+)
fam160b2 LOC108265858 other downstream 707530 27183021 ~ 27261741 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other downstream 791684 27267175 ~ 27295337 (+)
nr6a1a nr6a1,LOC107563838,LOC107721088,LOC107678448,LOC107698081,LOC107753334 other downstream 929959 27405450 ~ 27490461 (+)

Expression


Co-expression Network