lrrc75ba (lrrc75ba,LOC108264915,LOC108414797,LOC107753104)


Basic Information

Item Value
gene id lrrc75ba
gene name lrrc75ba,LOC108264915,LOC108414797,LOC107753104
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 30110797 ~ 30131740 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945859.2
cacactcacacacacactcacacacacacagagctcagagTCCCACCTACtgaacaccatacacacatgcacgcgcGCACGGGAAGCACGGGAGCACGGATGCACAGTGTAGCTGGAGCTGTAGCAGTGCTGTCCGGTGTTTATGTGTCGAGGTGTTTGATGCGTGATATAACGGGGGGAACCGGAGCAGCGGCTCCATGAGGAAGCTCGGataagaagaggaagaggaagaggaagggtAACGGACTGATCTGCGCGTGCAGTGTTTGTACCGGAGTCAGCCATGGGCTCGAGACTGAGCCGCCAGAGCAGCCTGGACGGTGGCGGCGGAGGCTCGcgcaggagaggaggaggaggaggaggagggcgGCGGAAACGCGCGGACAGCGGCGGGGAGCGCGAGCCCAGTGCCCCGTTCCCGGCCGCCGTGATGCTGCTGAGGACCGACAGGCTGCGCGCGAGCGCTCAGAGCCCGTACGTGAGACGGGTCGCGTGGATCCGCGACATCCAACAGCTGCTGCGCGAGAGGAAGGTGGAGGAGGCCGCGACCGTGCTGAGACAGCTGAGGAAGgatCTGGGATTAGAGGGAACGTCCCTGAAtgacattttatacaaaaacGCCGCTTTCCTCAACCTGGTGGATCCGATTTCACACGAGCTGCTGCTGAGTCTCGCTCGAGACATGCAGTGTCCCAAAAAGGACTCGGACATGCTGAAGTCGTCAGATAAAATCTGCAGGCAGCTCATCTATCACCTGACACCGCACTCGAAGTGGCTGAGACAGAGCATGAGCCGGAGAAAAGCCCAGGCCTGGCTGAAAACGACTCTTCAGAAGAAGCTCTGTAGCGACTCTGTGGATCTTTCTGGAATCCCCCTGTCCATGCGGGACATTCGACACGTGGCGTATTACCTCCAGACCAGCGGGGGCGCTGTCATATCCGTGGATTTGAGCTTTACTGAGCTGCGGGATGAAGGTTTACGAATCCTGTTGCCTGTTTTGGGCGTTTTGCCCAAACTCACCACGCTGGCGCTGAACGGAAACCGTCTGACCGTGTCCATCATGAAGGACCTGACCGAGGCCGTGAAAAGTCCAGAAAGTTTCTCGTGTCTGGCCTGGATCGATCTCGGGAACAACGTGGACATATTCACCATGCCTCAGCCCCTCCTGGTGGCGCTGAGGCGGCGCTGCAGCTTAAAGAGCAGTTTGCCCACCATTTACGAGTACACAGAGGGGCAGCCATATTGCTACCGTATGGAGAGCTCCATTGAGGAAGCGAGCCTTTACGAGGAAGACGAAGAAGAGGACGAAGACGAAGACGAGATGGACGACAAGCTAGATGTGGAGCAGTGGAGCATCGTAGAGCAGAAAAGTTCTGGAAGTTTCACCTTGAACTATTGCGAGAGGTGAAGCTAACCTTTGACCTTTAGCGTTACCCATCACTGAGGACGTAGAGACGAATTTGAGGAAGATGGAGGGACGGAGGGACAGATGCCGCCTCTCTGAACCACTTGTCGTCGCTCCATGAGTTTCCCCGTTCCCCATCGTGGCTTTATTGTGATCCAGCACCATCACATTCGCACAGGAAGTCAAACGGCGGCAAGAAAAACGACACAGGGCTTGATTAGcgtaaaaaaaatcagccacaCACTCACCGTTTTAGCCGTCGATGCTCCTGCTCCTTGGCGCTGGGAAGGGGCGGTTCATTGGTTCTTTGGCAGAACTGTGAGAAGATTCGGAGACGTCGCTTTCTTctacacacaatataaaaaataaataaataaataaacaccaatgAAAGATCCAGAAAAATCCAGAAAGAATGGATCAGCTTAGCTTGATTAGcttgattagctgattagcgTCCTCAAGGTGTTTCTAAACAAGGAGCCCATACGTTTAGCTATGGAGTAGTGGAGTACtgttatgtgtgtttgtgtgtgtgtgtgtgtgtgtgtggtcagattTGGCACACACTGCCGCTGCCACACATTGTCGCTAACATCACTAAACACCACTGTGTTCTTTGCTAATCTTCCAACAAAAGCCATGAGAGCAGCTCAACAAACCCGTCACGTGAACGCTGACAAAACTGCTACgtcaagactttttttttcctagacgTCCGGTCGTCACTTAGCGACACGCATCTGCGAATAAtgctaaaaaatataatatatataatataatattgtgatGTGTTCCTTTTTGTCAAGGCTTTGCTAGCACAGAGTGTAAACCGCTAACAGTCTCTCATCATGCCTGTGTTCATTATTATTGCTAACAAATATCATCTTTATGCTAATGTGTGACTTTTTCAGATTAACATACTACATCAAATTAGCCTAGATAGCTCCACGGCTAATTTTAGCATCACTGTATAAGGTATTAAGGCTCTATGTTAACCATGGCTTACTAAATCAACAGTGCTAACAACATAATACACATGCTAGCAGTTAGTCACTTTAATCCAGTCTACCACTTCCTATATTAGCCTACTGTTAGCAATTAGCATTTCACTCACTTGGCTAAGACAAGAAGGGCTAGCATGACTAGTGTGACTGGAGCTCCAGTTTTCGCTACTTCCTGTAGCCATTTCAACCCTTTAAAGAggttttttgcacattttagccatttattGTAAAggctaattttatttaatgtcaatGTGAAATACTCGTAGCGTATTAGCGTGTATGTGAAGCTGGTATTTTTCTTccaatattacacacacacacacacacacggagtcgtTTGGGAATAAACAGACTGTAAACGATGATAAAACTATAATATTCCTGTGATATAGTGTGTTGTCTTTTCCactgtgtgtatacgtgtgtgtgtatatatatgtgtactgCTGTAACATTGTTTTAACGTTGTGTGAGCGTCTGTGATTAGTCGTACTGTGCTAGTGTTGGTCCTGTGGTGTTGAGTCTCCTGTCCTCGAGTAGTTGGAGACTCAGTTTGTCCTTTCACAGGGCTCAAGCAGCAACGACAATATTTAAAGGAGCAAAAATAATTCTGCGAACTTAAAATAAAACGTCcacaaaactttaaaacatcacacacatgcagtcgATCAGCTGTGTTTAGTGTCCGAAGTTTCTTTGcttttgcactggagctgttAGCACTTCTAACCGTTGTGGCATCTGACTCTGAGGTAAATCAGACATTGAGGTAAATCAGACATTAAGATAAATTAGACATTGACGTAAATCAGACATTGAAGTAAATCAGACATTAAGGTAAATTAGACATTAAGATAAATTACACATTGAAGTAATCAGACATTAAGATAAATTAGACATGGAGGTAAATCAGATATTGAGGTAAATTGGACATGGAGGTAAATCAGGCATTGATGTAAATAGgacattaaagtaaattaaacattgaGATAAATAGGACACTGAGGTAAATTAGACATTAAGGTACATTAGACTGTGAGGTAAATCAGATATTGAGGTAAATTGGACATTGAGGTAAATCAGACATTAAGGTAAATCAGATATTGAGGTAATTAGGACTTTGAGGTAAACGAAACATTGAGGTAAATCAGACATTAAGATAAATTAGACTCTGAGGTAAATCAGATATTGAGGTAAATTGGACATGGAGGTAAATGAGACACTGTGGTAAAGAAACATTGAGGTAAATGAGAAATTGTGGAAAATTGGACATTGAGATAAATTGGACATTGGaaccatttcatttttggtCAAATGTCAACATGCTAAAACATTTACTCACAATAAAGATGTCATTAGCGTTAGCTGGGTTAGCCTCTCAGCTGAGTGAATTTTCTACcaagaattattttaattattgaatCTTATTTATTGAAGCCCTGACCCTAAATATATCGACACTGTCGTGGGATCAATAGAAACAGTCGTGTAACCTGTGTAGTGACACTCCTGAGCTGTAACCCACCTCTGTTTCGACTTTCTTTCTACGCTGCCGCTAGCTAGACATGCGTCGATAGTCTGCTATCTTGTCATGTTtgacatatatataatattgttagCATGGATACCTCAAAATATTATCACTCCCCTTGCATTCAGTTTGGGAAAATGGTGCCTTAGTGGggcttcattgtttttttttttccaaagaaaatATCTGTTGCATCCTGTAGTTAGCATGAGGAGAATCTAGTTAGCGGTCGAAGCTAAGTGTTATTTATCACCACATCTGAGGTAAACGTCGATGTGTCAGATAATACTGTCTTGTTTCCACGGTCACTGTGTCTTTACATTGTCcatattttaaatacttaaGGGCTAGGTAAGTCATTAGCTTTGTTTTTAGCTAAATATCGATGTTATAATTCAGTGTTCATGCTGCTTACTTGCCTAGCAATAGTGATCTATTGAATTTTACCATTTGAACGTCACGTGTCACGTTTTAAACGTCctacactgaacacactaatataaccaattacaataaataacatttcattATGATTAAAAGTCATATTAGTGTTTGTAGACTGCTATATGTTGTTCTCAAGATGACATTTTTACCTAACTAATGTAATGTTACCACACAGTTAACATGTAGAACTTGCTAGATAGtgataattagctagctagctatgctagtcagcttttttttaatagctagTGCGCGATTGTGTCCCTGTAGCACAAACGTAGCATATTTCAGTAAACAATATTGATTGCAGTCATATCTAAAGTTCAGCATCGGCTCATGCCTAGCCCGAACGCAGTGTGTTATTGTTCACAACAAAATCGGGTGTACACTATTAAATCAAGTTGCTAACTGTGCGTTTGGTTATTGTTATCGTTTCTGTGTACGTTTGTATAACGCGTCTCCGTGTCTAACTGGTGTGTGTAAGAAAATTGTGaattaaacaataatttataCGACTGTTACAAGACACTTGAGTAAT

Function

symbol description
lrrc75ba Orthologous to human LRRC75B (leucine rich repeat containing 75B).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 75B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945859.2 True 4928 mRNA 0.44 5 30110797 30131740

Neighbor

gene id symbol gene type direction distance location
hnf1a hnf1a,LOC108412048 coding upstream 164191 29932966 ~ 29946606 (+)
LOC113546086 NA coding upstream 177836 29930249 ~ 29932961 (+)
LOC117597833 hps4 coding upstream 199845 29909977 ~ 29910952 (+)
LOC113546087 LOC108264941,LOC108412053 coding upstream 207554 29899457 ~ 29903243 (+)
prkab1b aakb1 coding upstream 223442 29878359 ~ 29887355 (+)
LOC113546114 NA coding downstream 2196 30133936 ~ 30160538 (+)
rnf34a LOC108264913 coding downstream 45742 30177482 ~ 30181554 (+)
orai1a orai1,LOC108414442,LOC106585507 coding downstream 74768 30206508 ~ 30213445 (+)
LOC113523739 LOC108263642,LOC108270747,LOC108273691,LOC108270753,LOC108261292,LOC108274210,LOC108257668,LOC108261406,LOC108273546 coding downstream 184088 30315828 ~ 30322195 (+)
selenop LOC108264920,LOC108264932 coding downstream 245873 30377613 ~ 30382370 (+)
G141328 NA non-coding upstream 11955 30043926 ~ 30098842 (+)
G141324 NA non-coding upstream 67404 30042842 ~ 30043393 (+)
G141236 asphd2 non-coding upstream 87878 29964767 ~ 30022919 (+)
G141235 NA non-coding upstream 142756 29949858 ~ 29968041 (+)
G141247 NA non-coding upstream 156729 29937508 ~ 29954068 (+)
G141348 NA non-coding downstream 32653 30164393 ~ 30164991 (+)
G141366 NA non-coding downstream 39913 30171653 ~ 30172003 (+)
G141367 NA non-coding downstream 57727 30189467 ~ 30202765 (+)
G141375 NA non-coding downstream 82045 30213785 ~ 30214376 (+)
G141350 NA non-coding downstream 82746 30214486 ~ 30214821 (+)
ggt5a LOC108264907 other upstream 69941 30028861 ~ 30040856 (+)
G141234 hps4 other upstream 181643 29910029 ~ 29929154 (+)
LOC113546064 hps4 other upstream 181727 29903513 ~ 29929070 (+)
LOC113546008 LOC108264940,LOC108412050 other upstream 234517 29860188 ~ 29876280 (+)
LOC117597881 LOC108265326 other upstream 759035 29325934 ~ 29351762 (+)

Expression


Co-expression Network