tbc1d10aa (tbc1d10a,LOC108265670,LOC108441901,LOC106579927)


Basic Information

Item Value
gene id tbc1d10aa
gene name tbc1d10a,LOC108265670,LOC108441901,LOC106579927
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 26373810 ~ 26397861 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945866.2
TAATGTGGGTGGGAAGAAAATAATTCTTGTTGTGGTATATTACGAATATGACATTTCTGGAGTATATTCTCTTAATGGAAGCTGTTTGGGGATTTATTTTATACCGAACACGGGAATATTAACGTAAACTCTCGCGTCGCACAACAACTTTCGTTGATGGCCTAAACCGTGAGCGTAATGATGGCTGATGTTGAGAATGGCGATCAGACCTTGGACACGGTGAGTTTGCGGACAGAGGGCAGTCATTTTGGAGATGATGGAGAAAGCTCTCTGGGCTCCGACTCCGAGCTCAACGGCTTCCCAGGCTCCAGAGAGACGGACAAGTACGGCTTTATCGGAGGAGCGCAGAAGTATTCAGCCGAATCGGCTCAGGACGTTCCCCCGGAGGTGTTGAGGCAGAGAGAGCTGAAATGGTTAGAGATGCTGAAGGACTGGGACAAATGGATCAGCAAGAGATTTAAGAAGgTGAGACTGCGATGTCAGAAAGGAATCCCTCCATCGATGAGAGGCAGAGCCTGGCTTTACCTGTCAGGAGGGAAAGTAAAGAAGGAGCGAAACAGCGGAACTTTCAAGGAGCTGGACAGCATGGAGGGCGATCCAAAGTGGATAGATGTGATTGAGAGAGATTTACACAGACAGTTCCCTTTCCATGAGATGTTTGTGTCACGAGGAGGACATGGgcagcaGGATCTGTTGCGGGTGCTAAAGGCCTACACACTCTACAGGCCTGATGAAGGTTACTGTCAGGCTCAGGCTCCTATCGCTGCAGTGCTGCTCATGCACATGCCTGCTGAGgATGCATTTTGGGGTCTTGTTCAGATCTGTGAGAAATACCTTCCCGGTTACTACAGCGCAGGCTTGGAGGCGGTTCAGCTGGACGGAGAGATCCTGCATGCGCTGTTGAAGCGAGTGTGTCCTTTGGCGTATCGACACCTGGACAAGCACAAGATCGAGCCGGTGCTCTACATGATGGAGTGGTTCATGTGCGCTTTCTCCAGAACTCTGCCCTGGGCCTCGGTCCTCCGAGTGTGGGACATGTTCCTGTGTGAcggaGTGAAGATTATATTCCGTGTGGGCTTGGTGTTGTTGAAGTCCATGCTGGGATCTCGGGAGAAGCTGAAGGCCTGTCCGGGTCAGTATGAGACCATGGAGGTCCTCCGTGCGATCGAACCCAAGTACATGCAGGAGGCCTTCTTAGTGcaccagGTTCTGGAGTTGCAGGTCTCGGCGCGGGATGTGGAGCGCGAGCACCGCACGCAGCTGAAGCGCTGGAAGAAGAAGCGCGGCGAGCCCACCCGCAAACCCCCTCAGAGAATGCACAGTGCTCGTGCCATCATGGCCAACGAGCCTCATACACGCCAAGACCTCCGCCAAAACCCCACCATTATCGTCCAGTATCCATCAATCCCTGAGGAAAAGTCTGAGCCGAGCCTCAGGAAAAAGAGAGGGTCCCTAAAGAGAGCCCCCATTCCTAACATTCCTAACCCCTACGCCCTACCTAGTGAGTCTAAACCTAGTCAGATATTGGAAGTACAGCCTCTTAACAACGCAAGTCAAGATGTTGTACCTCCAAATCCGCCAGCACATCCACCCCCGCTCCCTACAATGCAGGAAAATCAGGTCAAAAAGACGAACACTTCTACAGAGCGACTCGTGCAGTCGTCCTCGAATTCCTCCATCAATAAGAAACCGGCAGAATCTCTCCCTCTGCAGCATCTATCACTCCTAACTGCTCCTGCACACGAATCGCGTCTAGAGTGGCGTCCTCACCTGCTGGACTCTCCTCCTGTCCAATTCCCAGAACCTGTCCCTAATAATACAGAAAACTCAGCCGCCATTTTGAATCCATCTACAGACTCAAGCTCTCTGCTTACACACAACGTACCTGCCAACGAAGACTCGACTGCTGCTTATGAGGACAAAAATGGCGCTTCACGCAACTCTACAGGGAGCATCAACAGCTCAGAGGACACCTACTTGTAACTCGCTCACTGTCGCCACCTGGTGGCTTGGAGGAACAGGAAGCTGCAGCATTGGGAAAAATTTTTACATTCAGTAGCTAATTTGAGTGTgataatttacacatttattcactcttaaacaaatgatttgtcttaaaatctaatttacacaATTCACCCCAGAGGCAGCCAAGATAGGTGTCTAAAGTGTGTTTCTTTAGCTTCGTACTGGAGagtcagacaccaaacatgcctTGGCTGATTTACTAAATTTGGGATGAGGGGAAAATGGTGCAAATTTGACtgacaatttttgttttttttaatttatttttttattaagaaatgtctATTTCATTAGGGAAAGAAACTCTGAGAGGTCAATTAAGGATCAGTGATGTCAGAGAAAATCCTGGAAAAATACTGTATCATGAGCATCTCACACGCTGCCATCTTGGTGTCACTGCGGAGCTGAGAATGATCCACTACCCTAATGAATCTACTCGGCAATGGCCTAATCAGGTTTCCTTTCCATTAATGGATGGTGTAGAGAACGGCTGACAGATGAGCTTCAGTCAGTTATATTtctaaaaaaggataaacctgCCAGAGTATACTTCAGTAATGTAGATTTATACTCAGACTTGCCATATGAGACCGTACAAAtggtaaacaaaataaattcctGGAGCTTTGACATGTGAGTCCCTAAATCTCAAGGGAAGTGGAGAGTCACACTACTTTAGGACCAATTCTTAACTCTCAGATCCAGAGCAGTATTTGAGGTTCTGACGTTTTTACGTCTGAGTCTCTACATCTGAGGCCGTATGTGTGAGGTTCTGCATCTGAGGCTGTGCGTCTGAGGCTATACCTCTGAGGATCTACCTCTGAAACTGTATGTCTGAGGCTGTGTCTCTGAGGCTGTACATCTGAGGCTGAGCATCTGAGGATCTATGTTTGAGGCTCTGCATCTGAGGCTAAATACCCTAGGCTCTACGTCTGATGCTCTGTGTCTGAGGATCTACCTCCGAGGACCTATGTCTGAGTCAGTGCATTTGAGGCTCTTCGTCTGAGGCTATACATCTGAGGATCTACCTCTGAAGCTCTATGTCTGGGGCTGTACATCTGAGGATCTGTGTTTGAGGCTCTACGTCTGACTAACAACGTCTGAGGCTCTAGGTGTGGGGACAGTCTGTCTGAGGCTCTGCACCTAAGGCTTTACGTCTGAGGCTCTTCCTTGGAGTCTGCTTTCTGTTACTGTCTTATTTGGTTCGTGTGATGTCATTCTAACACAAACGAGGTCATTTTAACATGTTTGTACATTAatgggattggtcagaactGCACAGTGGGCATGTGCCAATATTTTCATATCACTTCTTGTATCACTACTGTATTTGGCACATTATATGGAACACtgctaaattattttaaaaatccttcTTTAGTCTAATTGACATTGATGACATTCTTGAAACTTTCCAAGTGTGACAATTACTTAGAAGCTCAGCTTAAAAAATGTGGCCTACCTAGTAGGGCTGGGCGAATAATATAATATCctattgttattttaattaatcacGTCACTTTTAAGTCAGTATGGTATCATGAGGGAGCATCTAAAACATGGAGCAACTGTATTTTTAACAATGTGATGTTTCGTAATTTTGAGACAgttggatctttttttttttttttttaattggttgactgtacagtgtgttatcttattttagctattttataccagttgattttttaaaaaattttttactcTTCctgattttgtttaatttcattctgGAAATGCCAAAAGTCTCAATTCATAGGTTAATCATCAGATATTTAAACATGTCATGGCACTAATGCTAGACAGTAATGCTACATTCAGTTCATTCCTTAtgtttattcactcattcacgtATTCAGAATTAGGTAATAGGTTCGTCATGCACGTACATGTCTTGCCTcatgtattgtgatatattttttccGTAATCTTCCACCGCTGCTATCTACACCGCCACTTTCTGAACCGAATACAGGGGTATagttcaattattttttttaccgtGTGTGTTAAACAGTGTGATATGTTGTAGAATTGATTATTGGCACATGTCTACTGATTAGCAAGGATCGAAAAGGTCTTGTATGTGTTACAGGTTACTCAGGTGTAACTGCAAACAATCTGAGAAAGGGAGAAACTCATGGCTGTTTTTCTTGTTTCAGTTACTAGAGGGCAGACTTTGTCCAAAAATGTACACTCTCTCCACAGAAATGCCCGAGGAGTCTTTCCTCGCTACAGCCTTGAGAAGGGAAACTTCATAACCTGCCCACAGATTCGCTCTTGAAAGAATCTCACAAGAATCACAAACACTTCTTTATATTACACTTATGCACGTGTATTAatttggcagatttttttttctttatccaaAGCAACCACCGcttctttgtatttgtatttcacATCGTTACcacattttaccattttatcatcatttatACAAGAGCTGCATGATTATCACAACAATCCTATATAATAGCCGTACAATTTTCATTAACATAATCTCAATGAAATATCTACTTTATCTTGGCATGTCCTGTATACTTTATGCGTAAACAAAACAACTCAAGCTGAGAACTTTATTGCTGATTTACTTTGTACCACATCACTGTCGAATTCtctctaatacactctaataagttattgtttctatagtaacaatttacacagggaattgtatggTGGACGATCTACATAATCTGATAGTAACGATAAACAtcttgttgtttaacaaagaaaaatgtataatcatcaATGTGGTATTTCaaatttacggaaggagtctccagtgtcagcgcaaTAAGTTTTCTGTCATTGGACGTtgtaacatcacaagctgctcgatattaaaatgcaattttacaCGACGGAAACAGTTAcgtttgcttttttaaatggttttctaGGAGTGCTAAGTTGAAAGTGGTAATATCTGGATGATCATTTTGtaagtttaaatcccaggaGTGCCAGAAATGTTGGGATCAATCCTGAATAAAACCTCCAACCCTCAACTGCTACTCAGTTTGTTCTGGATTCGGGTTCACGTGTTAAGATgccttgaggaaaaaaaaaaaatctgccaaataaatctgtttgtagACTGTTTTGTTCACCTTCAGCTACATCCAGTTACActcatttttacataataactcATTAATGGAAGCTGttactttatttgtatatatatttttaatagctGGAGCTTTGTGACACTagtttgtgtagttttttttttcagagaacaCACAATTACAACcaattttatgaaataattataaGAATTTACTTCTAAATTTACTACTCAAAAACTGaacattattttgtaaatattccTAAAGCTTCGGGTcaattttcttacatttttgtcAAACCTgagcatgtgctgttattacGTTCACTACCATAATTGCTAAACCTTTaatgatttgcatattattatatactgtatcagAGAAACTTTACTTATAAGTGGAATTCTGGGGTTGTCTTCTTCGAGAAGGACTCTTGAGATGCTGCGTGGGACAAACTAACGGACTTTGTTGAAAGTATAAGGAGGTTGTCCTTTTATCCTTTTGTACAACAGACTTCATCTCAGGAGCAGAAATGCTGACTACCCAGGAAGGGTGGTATCTGAATATTCGGGAGATGTTCACAATAACATTATAAGGATTATATTATGTCTAATCTACAAATCTGTCATTCTGTAGATGTTGTACAATCAGATGCCTcctaataaaaacaataaccagA

Function

symbol description
tbc1d10a Enables PDZ domain binding activity. Involved in activation of cysteine-type endopeptidase activity and retrograde transport, endosome to Golgi. Located in plasma membrane.

NR:

description
PREDICTED: TBC1 domain family member 10A-like

GO: NA

KEGG:

id description
K19944 TBC1D10; TBC1 domain family member 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945866.2 True 5787 mRNA 0.42 10 26373810 26397861

Neighbor

gene id symbol gene type direction distance location
myl7 myl7,LOC107753162,LOC107554405,LOC107703146,LOC106580582 coding upstream 2013 26368415 ~ 26371797 (+)
npc1l1 npc1l1 coding upstream 32213 26324416 ~ 26341597 (+)
fahd2a fahd2b,LOC108440674,LOC107753161,LOC107703178,LOC107712485,LOC102211511,LOC105902774 coding upstream 265907 26096658 ~ 26107903 (+)
LOC113546011 LOC108265344 coding upstream 286344 26082899 ~ 26087466 (+)
antxr1a antxrl,antxr1a,antxr1,LOC108265351,LOC107661337,LOC107710819 coding upstream 384648 25952967 ~ 25989162 (+)
aplnra aplnr,LOC108441910,LOC107753098,LOC107703172,LOC107687998,LOC107550977,LOC107554406,LOC107712463 coding downstream 37655 26435516 ~ 26437704 (+)
hpdb hpd,LOC108264894,LOC108441909,LOC107723232 coding downstream 70458 26468319 ~ 26475491 (+)
trnaa-agc NA coding downstream 78417 26476278 ~ 26476350 (+)
trnaa-agc_1 NA coding downstream 78944 26476805 ~ 26476877 (+)
trnaa-agc_2 NA coding downstream 79526 26477387 ~ 26477459 (+)
G139235 LOC108265343 non-coding upstream 337677 26032594 ~ 26036133 (+)
LOC113546140 NA non-coding upstream 423361 25948849 ~ 25950449 (+)
G139172 NA non-coding upstream 558769 25810175 ~ 25815041 (+)
G139166 NA non-coding upstream 690719 25672518 ~ 25683091 (+)
G138961 NA non-coding upstream 922233 25448615 ~ 25451577 (+)
G139551 NA non-coding downstream 115031 26512892 ~ 26519482 (+)
G139647 NA non-coding downstream 480775 26878636 ~ 26899417 (+)
G139653 NA non-coding downstream 493216 26891077 ~ 26894530 (+)
G139686 NA non-coding downstream 709068 27106929 ~ 27108878 (+)
G139756 NA non-coding downstream 941132 27338993 ~ 27341506 (+)
LOC117597866 NA other upstream 457003 25909575 ~ 25916807 (+)
egr3 egr3 other upstream 815079 25551894 ~ 25558731 (+)
LOC113533115 gnrh1 other upstream 1239552 25132741 ~ 25134258 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 2360029 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 2479085 23890416 ~ 23894725 (+)
car15 LOC108264895 other downstream 2330 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 164959 26562820 ~ 26567932 (+)
rimbp2 rimbp2,LOC108414005 other downstream 228192 26626053 ~ 26729946 (+)
fam160b2 LOC108265858 other downstream 785160 27183021 ~ 27261741 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other downstream 869314 27267175 ~ 27295337 (+)

Expression


Co-expression Network