LOC113546128 (LOC108265329,LOC103021710,LOC108414840)


Basic Information

Item Value
gene id LOC113546128
gene name LOC108265329,LOC103021710,LOC108414840
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 29315819 ~ 29318495 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945870.2
ATCCAGCCAACTTCTAGAGCCGAGTCCTAAAATAACCCGGTTCCCCGGGAGTGTGTACCAGCCATGTGAACGCTGTGGATCTACAACTTCAAACTGACAGCAATGAAGTGACTTTCAGTCGCGGAGTCCTCAAGTCTTCGGATAATTAATATCAACTTCTCAGATTTCATCACCAAAGTTCAGCTCCAAATGTCCTACAGGTCCAAATATAACGATTCACGCTCTGCGAAAATAGAGATCGATTTCACCTCGCCTGTTATGGCAGTGATGGGAGTCGAGCAGCTCCTGTTTTCCGGGAGAGCGATCAACAGTCCTGCTAATGAGGTCTGGCCCAGACTTTATATAGGAGACATGGGTTTCGCAGAGAATCGTGCCGGGCTTCGCAGGCAAAACTTCACTCACGTGCTGAACTGTGCTCACAGCTCCAGGCGAGGTGACGACTTTTACTCCGGAATGGGAATCACATATCTGGGCATCGAAGCTCACGACTCTCCTGCCTATGACATGAGCGTCAACTTTAATACAGGAGCAGAGTTCATTCATAATGCGCTCAGGACGGGAGGGAAAATCCTGGTGCACTGCCACGTGGGCGTGAGTCGCTCGGCCACCATCGTGCTGGCGTACCTGATGCTGAAGCACAACATGACCCTGGTGGAGGCCATCAACACGGTTAAACAAGGGAGAGGGATCATACCCAACCGGGGCTTCCTCCGACAGCTCGTCGACCTGCACATCAAACTATGTACGGCTACAGATCCTGAGTGCGTGACCACGCCTTCCCAACACCTGACTGTTCAGGAGAGACTTCGCGGGAATGAGATAATGGTGGTTTGGAAACGTACATAGTACATTAGTTACTGTTTCTAGCTTCTGAGATGGTGGAGGGTTATTTAGAGATGTGGGTCGGCCCTGATATAAAGAGctgtattttataatgtttataaacagccaattttataatgtattgttatttaattgACAGTAAAGCAGTGCTCTGTGGTAAAAAGGCAAACATGGCGGGTTtgattcatgctttttttttttggtaattttcttttctcaacAGTGTGTTTTTCCCCACGGATGATTCCCTGATATATAATTTGAAAAATGGTGTTTAactcattaaatattttcttattgAAATTTG

Function

NR:

description
PREDICTED: dual specificity protein phosphatase 26-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945870.2 True 1150 mRNA 0.46 3 29315819 29318495

Neighbor

gene id symbol gene type direction distance location
bag4 bag4,LOC107702866,LOC107548251,LOC103396927 coding upstream 2506 29307011 ~ 29313313 (+)
pold2 pold2,LOC107747204 coding upstream 137406 29167480 ~ 29178413 (+)
sf3a1 sf3a1,LOC107564451,LOC107550953 coding upstream 150831 29153546 ~ 29164988 (+)
glt1d1 glt1d1 coding upstream 820786 28468419 ~ 28495033 (+)
si:dkeyp-14d3.1 tmem132c coding upstream 902660 28196856 ~ 28413159 (+)
rsph14 rsph14 coding downstream 527 29319022 ~ 29325104 (+)
si:dkey-220o5.5 LOC108265324 coding downstream 36488 29354983 ~ 29409064 (+)
si:ch73-138n13.1 LOC108265491 coding downstream 93332 29411827 ~ 29472922 (+)
kazald3 LOC108265493 coding downstream 163521 29482016 ~ 29485959 (+)
trnag-ccc_1 NA coding downstream 169478 29487973 ~ 29488043 (+)
G140910 NA non-coding upstream 18022 29297050 ~ 29297797 (+)
G140884 NA non-coding upstream 69503 29239482 ~ 29246316 (+)
G140830 NA non-coding upstream 149613 29158731 ~ 29166206 (+)
G140755 NA non-coding upstream 571982 28631888 ~ 28743837 (+)
G140935 NA non-coding downstream 102385 29420880 ~ 29421294 (+)
G140943 NA non-coding downstream 185188 29503683 ~ 29504872 (+)
G141242 NA non-coding downstream 601237 29919732 ~ 29937740 (+)
G141247 NA non-coding downstream 619013 29937508 ~ 29954068 (+)
G141235 NA non-coding downstream 631363 29949858 ~ 29968041 (+)
slc7a4 slc7a4 other upstream 512645 28748834 ~ 28803174 (+)
arpc5la arpc5la,LOC108265305,LOC108411248,LOC107571143,LOC107753090,LOC107550963,LOC107676626 other upstream 1288369 28019184 ~ 28027450 (+)
dbnlb dbnl other upstream 1456117 27838245 ~ 27859702 (+)
nr6a1a nr6a1,LOC107563838,LOC107721088,LOC107678448,LOC107698081,LOC107753334 other upstream 1825358 27405450 ~ 27490461 (+)
LOC117597881 LOC108265326 other downstream 7439 29325934 ~ 29351762 (+)
LOC113546008 LOC108264940,LOC108412050 other downstream 541693 29860188 ~ 29876280 (+)
LOC113546064 hps4 other downstream 585018 29903513 ~ 29929070 (+)
G141234 hps4 other downstream 591534 29910029 ~ 29929154 (+)
ggt5a LOC108264907 other downstream 710366 30028861 ~ 30040856 (+)

Expression


Co-expression Network