antxr1a (antxrl,antxr1a,antxr1,LOC108265351,LOC107661337,LOC107710819)


Basic Information

Item Value
gene id antxr1a
gene name antxrl,antxr1a,antxr1,LOC108265351,LOC107661337,LOC107710819
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 25952967 ~ 25989162 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945872.2
CTGGGTCAGTGAGGTGCTTGATTCCGTACAGTACATgtctgtgtttatatgtgtgcatttgtgcatgcaaaaagttgttttcttttcaagtaattaaattaaataacagttcATCTCAGCCCACTTTCCTGGACCAAAGCATCTTCTGTTAAattgttgtgggttttttttttcctcatccatTACTTAAGCAGTCATAAATGCTTCTGGAACTTTAAAGACACTCAAAACTATTTTCAAGGATGGTTTAACCTGATCCCAGATTGCAGTGTGGAGTACCTGCAGTGAAGAAGACATCATTCTCAGACAGTTTGGGACTTATGGTTTGAGTTTTCCTTTGGTGGTCGTCTATTGTTTTGTTGCATCAAGACCATGGCTCACACTAAGTGGAAGTGCTGGTGGATAGTGCTATTGCTGTGTTTCTTGCTGGTGTGGATTGCTGATGGGAATGTGGGTTTATCGCCAGATAAAGGAGTAGCAACGCCATCCTGCTATGGAGGTTTTGACCTCTACTTCGTCCTGGATAAGTCTGGAAGTGTGCAACATCACTGGACCGAGATCTATAATTTTGTTGCACATCTGGCTCACAAGTTCATTAGCCCACAGCTTCGAATGTCCTTTATCGTGTTTTCCACTGAGGGCCGGATCCTCATGCGGCTAACAGAGGACAGAGACAAAATTCGCAAAGGTCTGGAGGAGCTCCAGAGAGTTCTACCAGGAGGAGATACTTTCATGCATGAGGGTATTCAAAGGGCAAGTGAACAGATTTACTATGGGAACACTGAGGGGTACCGTACAGCGAGCGTCATCATCGCACTTACAGATGGGGAATTGCATGAGGATCTCTTCTACTATGCTGAAAGAGagGCCAATCGTTCCCGAAGCCTGGGTGCCTCAGTCTATTGTGTAGGGGTGAAGGACTTCAATGAGACACAGCTTGCCAAGATTGCAGACAGCAAAGATCATGTTTTCCCCGTGAATGGTGGGTTTGAGGCTTTGCAGAGTGTGATCGATTCGATCCTGAGAagatcttgcattgagatcCTTGCAGCAGAACCTTCCAGTATCTGTGCTGGAGAGTCATTCCAGGTTGTCGTGAGGGGGAATGGCTTCCTCCATGCCAGGAATGTGGATAAAGTCCTGTGCAGCTTCAGAATTAATGACACCCTCACCAGGATGGTAAAGCCATTGATAGTGGAGGACACATACCTGCTGTGTCCTGCGCCAATACTTAGAGAAGAGGGAACgGCGGCTTCCCTTTATGTGAGCATGAATGAAGGCCTTAGTTTCATCTCCAGCTCTGTGACCATCACCACTGTGAGCTGTTCTGATGGTACAATCCTGGCTATAGCTCTGCTGATTCTGATGCTCCTGTTGGTGTTGGCTCTTCTCTGGTGGTTCTGGCCTCTTTGCTGCACTGTGaTCATCCATGAACCCCCACCACCTCCAAAAGAGGACAGTTCGgatgaggaggatgacgGAGCACCAAAGAAGAAGTGGCCAACAGTAGATGCTTCCTACTATGGAGGGCGTGGAGTCGGGGGGATTAAAAGGATGGAGGTACGCTGGGGGGAGAAGGGATCAACTGAAGAGGGCGCTAAACTTGAAAAGGCAAAGAATGCCAGGGTGAAGATGCCAGAACAAGAGTTTGAAGCTCCACATACCCGGGTCCTGAACAATGGGATGCATAAACCGACAAGCCCTCGCAAGTGGTATTCTCCAATTAAGGGTAAACTGGATGCCCTGTGGGTACTGCTGAAGAAAGGCTATGACAGAGTGTCCATCATGAGACCACAACCAGGAGACAAGGGTCGCTGTCTGAACATCACCCGCACTAAGTCAAGCTCATCTCCACATTATCCAGCGTACAACCGCCACACCCCGATCTACACCCCCCAGCAAAGCTGCagcactcctcctcctcctccccagAGTCAGCTGCCCCCTCCACCCTGCAGCCCACAATCcactcttcctcctctctccatcactccgTCTCCACCCATCACACCTCCTCCATCATACACCCCTCCATCAGCCTGGTCCTCATCGTCCTCTCCTGTTTTCTTTGATTCGCCTTCTCCTCCAGCCTCACCTACAGGACCGCTTCCTCCTCCCCCACTGGCCCCACCTCCATGCCGAGCCCCTCCTCCTGACCGCCCTCCACCACGCCCTTCCCTCTAGGGCTATGGAGGTGAAGCGGAATCAGGAAGTCAGTGGGAGACTCAAGTCTCTCTCCTTAACCTTCTTGTTGTCTAACTGTGTGGCCTTTGACAATAAAAACTTAATGACTAGCCCACCAGTGGGAACAAACACAAGGGAACAGACTATGTCTTCAATTTCATCTACAAAACTACAGGAACCACCACACAGACGAAAGCAATATTATAGACCACACTGAGCACCACGCACAAGTCTTTAAAGAAGGCTTTCACAACAGACCACTGCTACTCAAGCCCACATGTCCAAATGACAGGATGGACATTCATCTGAAGCCATTTGCTTCACATGCAAATGAAATGGACCAGTGAATGTTCCATTTACAGAATCTATTTAATGGGAAAAGTTGCAATATGTGCATATTTGTTCATTCATACAGCTAATACGCATTTATGAGACAAGAATCCAGTCTTTCAATCTACCAGAGAAACTTCTGATCAAATCCTGAGCAGCCACTGTCCAAGGAAGCATGTAGATAATTAAAACTCTCAAGTATTAAAACTCtcaggccctgatttactaagatcccTAAAAACAAGTACTAATTGTTGTAACCTGTAGTGAGTAGGCATGTTGTGGGCACAAAAAGTATTCAAGCGAATATCTTACGATGCAAAATCCGAAATGAAAGAACATAGACacaagtgtgtgttctgttaatAAGGAATTTGTAAAGATTTTATCAGAAGATATAATATGTAATGAACATCATATGAATCTATGTTTACTGCAGTAAATCATAATTTCATCGAACATTCTAATTATTAAAAGGGTAAatggtttttattttgtcttcaaatgGTGGACACGGCTGcaacaaatttaatacctgctcTTTGGTGGTATAAATTTGCACATCATGCAGTTGCTGTTTATTAAGGCAAACAGGTAGAACAGACAAAATGTGatattttgcttatttgaaATATGCAAACATCCTCACATGCTGTcagcttagatttttttttttttggaggttttatcaattttgcacatttttgcacACAAACGTTTAGTAAACCAGGCGCTCAggcattcattattaatatccaCGCCCATATTTGACAATGTTAATGTAATGTACTTTGATATTGTAGGTTTAGGTTCATTGTTGtatgatgtttttaatttttcacttcCTTTCCTCACATTTTCGAAGTTAGGTATTTGTTAGATGTTTTTAGTCCAAGAATATTGGAATATTACTTACTGGGGTTTATTTCTTGGCATATCAGTGCACAATCCACATTTGTTATGACATACAAGTGCACAATCACCTTATTACATACTTTTATACATGTactatgtataaatatatgtatcccttgcctttttttcctttgttttttgaTGTCAAGTCattttatcaaatattttttcttgaTTTGTTTCCTTAACTGTGATCTTTGCATCACATTAAACCATGCAAAGAGGAGTCCTCACTTAGGTCTTTGGTAGACTACGGTAAACTTTCTAACTTGCCTTAATATTCATTTGCCTTAAGAAACCTGACCTAGATTTATCCACAAGAAATGATGGAAATCCTCGTCTCTTGCCAACAAGACACGTCCCAGCCAGTGATCAGTGTGCCAAAAGTGTGTTTGaatgatgtgtttgtttttgctctgtaCCTGTTGTATATACTTTGTGTCACTGTGTTATGatctgtggttttgtgtgttcAGATTTTGGGGTTTACTTTCAGCATGTTCGGCTCctaaattattacaaaatgtattatGACGTGCAAGTCTAATAGAGGATTGTGTACACAAATCACTGTCTGATACACAAATATGAGGATAGCAAAGATTTTGgcattttgctcttttttttaacttttgctCTGTATCATTCACTAAACCAGTGATAAATAAGAGCTCGCtttgctctttgtgtgtgttcctcGAGTGCTGTGGTTGAATTTAAGGAGGATGGAAATCGAAACCTCCTATCGGCGAGCAGAAAGGACAGGATTATTTTCCAAAGCAGAGCTCGGAAATGGCAGATGTGAAGTACGACTCTTTTAACTTTGCAGGGACACAAATACTGAAACTGTATCAGCTGGTAAAtttgtgtagatgtatatatactgtatatgcattatgtgcttgtatgtgtgtctctcttttttagAAATTCATTTGATAAACTGGCCTAGCATTTTTA

Function

symbol description
antxr1a Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in toxin transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane. Human ortholog(s) of this gene implicated in GAPO syndrome and colorectal carcinoma. Orthologous to human ANTXR1 (ANTXR cell adhesion molecule 1).
antxr1 Enables actin filament binding activity; collagen binding activity; and transmembrane signaling receptor activity. Involved in actin cytoskeleton reorganization and substrate adhesion-dependent cell spreading. Located in external side of plasma membrane; filopodium membrane; and lamellipodium membrane. Implicated in GAPO syndrome and colorectal carcinoma. Biomarker of breast cancer; colorectal cancer; gallbladder carcinoma; and triple-receptor negative breast cancer.
antxrl Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in toxin transport. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane.

NR:

description
PREDICTED: anthrax toxin receptor 1-like isoform X2

GO: NA

KEGG:

id description
K20909 ANTXR; anthrax toxin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945872.2 True 4389 mRNA 0.43 18 25952967 25989162

Neighbor

gene id symbol gene type direction distance location
LOC117595683 NA coding upstream 12336 25938646 ~ 25940631 (+)
LOC113537824 NA coding upstream 33704 25917747 ~ 25919263 (+)
disp3 disp3,LOC107710822,LOC107553125,LOC107678473,LOC107562651 coding upstream 148525 25762965 ~ 25804442 (+)
si:dkey-32e23.4 si:dkey-32e23.4,LOC108426682,LOC108265374,LOC103036512,LOC107710834,LOC107562650,LOC107665195,LOC107678420 coding upstream 249842 25686205 ~ 25703125 (+)
ubl4a ubl4a,zgc:56596,LOC107665196,LOC107553161,LOC107562643 coding upstream 281067 25666925 ~ 25671900 (+)
LOC113546011 LOC108265344 coding downstream 93737 26082899 ~ 26087466 (+)
fahd2a fahd2b,LOC108440674,LOC107753161,LOC107703178,LOC107712485,LOC102211511,LOC105902774 coding downstream 107496 26096658 ~ 26107903 (+)
npc1l1 npc1l1 coding downstream 335254 26324416 ~ 26341597 (+)
myl7 myl7,LOC107753162,LOC107554405,LOC107703146,LOC106580582 coding downstream 379253 26368415 ~ 26371797 (+)
tbc1d10aa tbc1d10a,LOC108265670,LOC108441901,LOC106579927 coding downstream 384648 26373810 ~ 26397861 (+)
LOC113546140 NA non-coding upstream 2518 25948849 ~ 25950449 (+)
G139172 NA non-coding upstream 137926 25810175 ~ 25815041 (+)
G139166 NA non-coding upstream 269876 25672518 ~ 25683091 (+)
G138961 NA non-coding upstream 501390 25448615 ~ 25451577 (+)
LOC117597843 LOC108261789,LOC108265915 non-coding upstream 524779 25421054 ~ 25428188 (+)
G139235 LOC108265343 non-coding downstream 43432 26032594 ~ 26036133 (+)
G139551 NA non-coding downstream 523730 26512892 ~ 26519482 (+)
G139647 NA non-coding downstream 889474 26878636 ~ 26899417 (+)
G139653 NA non-coding downstream 901915 26891077 ~ 26894530 (+)
G139686 NA non-coding downstream 1117767 27106929 ~ 27108878 (+)
LOC117597866 NA other upstream 36160 25909575 ~ 25916807 (+)
egr3 egr3 other upstream 394236 25551894 ~ 25558731 (+)
LOC113533115 gnrh1 other upstream 818709 25132741 ~ 25134258 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1939186 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 2058242 23890416 ~ 23894725 (+)
car15 LOC108264895 other downstream 411029 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 573658 26562820 ~ 26567932 (+)
rimbp2 rimbp2,LOC108414005 other downstream 636891 26626053 ~ 26729946 (+)
fam160b2 LOC108265858 other downstream 1193859 27183021 ~ 27261741 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other downstream 1278013 27267175 ~ 27295337 (+)

Expression


Co-expression Network