Item | Value |
---|---|
gene id | rimbp2 |
gene name | rimbp2,LOC108414005 |
gene type | misc |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047602.1 |
NCBI id | CM018548.1 |
chromosome length | 30442583 |
location | 26626053 ~ 26729946 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
rimbp2 | Predicted to be involved in neuromuscular synaptic transmission. Predicted to be located in plasma membrane and synapse. Predicted to be active in presynaptic active zone cytoplasmic component. |
description |
---|
PREDICTED: RIMS-binding protein 2 isoform X1 |
id | description |
---|---|
K17591 | RIMBP2; RIMS-binding protein 2 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026945873.2 | True | 7755 | mRNA | 0.51 | 27 | 26626053 | 26729946 |
XM_026945876.2 | False | 7752 | mRNA | 0.51 | 27 | 26626053 | 26729946 |
XM_026945880.2 | False | 7575 | mRNA | 0.52 | 25 | 26626053 | 26729946 |
XM_026945882.2 | False | 6906 | mRNA | 0.51 | 24 | 26626053 | 26729946 |
XM_026945883.2 | False | 6903 | mRNA | 0.51 | 24 | 26626053 | 26729946 |
XM_034306960.1 | False | 6126 | mRNA | 0.54 | 27 | 26626053 | 26729946 |
XM_034306961.1 | False | 5036 | mRNA | 0.58 | 28 | 26626053 | 26729867 |
XM_034306962.1 | False | 6123 | mRNA | 0.54 | 27 | 26626053 | 26729946 |
XM_034306963.1 | False | 5372 | mRNA | 0.57 | 28 | 26626053 | 26729946 |
XM_034306964.1 | False | 6105 | mRNA | 0.54 | 26 | 26626053 | 26729946 |
XM_034306965.1 | False | 6063 | mRNA | 0.54 | 26 | 26626053 | 26729946 |
XM_034306966.1 | False | 6009 | mRNA | 0.54 | 26 | 26626053 | 26729946 |
XM_034306967.1 | False | 5946 | mRNA | 0.54 | 25 | 26626053 | 26729946 |
XM_034306968.1 | False | 5457 | mRNA | 0.54 | 26 | 26626053 | 26729946 |
XM_034306969.1 | False | 5277 | mRNA | 0.54 | 24 | 26626053 | 26729946 |
XM_034306970.1 | False | 7554 | mRNA | 0.52 | 24 | 26626053 | 26729946 |
XM_034306971.1 | False | 6885 | mRNA | 0.51 | 23 | 26626053 | 26729946 |
XM_034306972.1 | False | 6882 | mRNA | 0.51 | 23 | 26626053 | 26729946 |
XM_034306973.1 | False | 5394 | mRNA | 0.54 | 25 | 26626053 | 26729946 |
XR_003404685.2 | False | 5045 | misc_RNA | 0.58 | 29 | 26626053 | 26729831 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
stx2b | stx2,LOC108441897 | coding | upstream | 6351 | 26604521 ~ 26619702 (+) |
piwil1 | piwil1 | coding | upstream | 23813 | 26592058 ~ 26602240 (+) |
fzd10 | LOC108266036,LOC108441898,LOC103024082,LOC107574912,LOC107659609,LOC107669258,LOC107723249 | coding | upstream | 78045 | 26544657 ~ 26548008 (+) |
trnaa-agc_2 | NA | coding | upstream | 148594 | 26477387 ~ 26477459 (+) |
trnaa-agc_1 | NA | coding | upstream | 149176 | 26476805 ~ 26476877 (+) |
adgrd1 | adgrd1 | coding | downstream | 5436 | 26735382 ~ 26787981 (+) |
ulk1a | LOC108265551 | coding | downstream | 63120 | 26793066 ~ 26817793 (+) |
ep400 | ep400 | coding | downstream | 90011 | 26819957 ~ 26856983 (+) |
ncor2 | ncor2,LOC107753125,LOC107684513,LOC106585520 | coding | downstream | 159387 | 26889333 ~ 26989582 (+) |
ccdc92 | ccdc92 | coding | downstream | 349150 | 27079096 ~ 27100750 (+) |
G139551 | NA | non-coding | upstream | 106571 | 26512892 ~ 26519482 (+) |
G139235 | LOC108265343 | non-coding | upstream | 589920 | 26032594 ~ 26036133 (+) |
LOC113546140 | NA | non-coding | upstream | 675604 | 25948849 ~ 25950449 (+) |
G139172 | NA | non-coding | upstream | 811012 | 25810175 ~ 25815041 (+) |
G139166 | NA | non-coding | upstream | 942962 | 25672518 ~ 25683091 (+) |
G139647 | NA | non-coding | downstream | 148690 | 26878636 ~ 26899417 (+) |
G139653 | NA | non-coding | downstream | 161131 | 26891077 ~ 26894530 (+) |
G139686 | NA | non-coding | downstream | 376983 | 27106929 ~ 27108878 (+) |
G139756 | NA | non-coding | downstream | 609047 | 27338993 ~ 27341506 (+) |
G139807 | NA | non-coding | downstream | 830444 | 27560390 ~ 27569085 (+) |
LOC117597788 | NA | other | upstream | 58121 | 26562820 ~ 26567932 (+) |
car15 | LOC108264895 | other | upstream | 163732 | 26400191 ~ 26462321 (+) |
LOC117597866 | NA | other | upstream | 709246 | 25909575 ~ 25916807 (+) |
egr3 | egr3 | other | upstream | 1067322 | 25551894 ~ 25558731 (+) |
LOC113533115 | gnrh1 | other | upstream | 1491795 | 25132741 ~ 25134258 (+) |
fam160b2 | LOC108265858 | other | downstream | 453075 | 27183021 ~ 27261741 (+) |
adam9 | adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 | other | downstream | 537229 | 27267175 ~ 27295337 (+) |
nr6a1a | nr6a1,LOC107563838,LOC107721088,LOC107678448,LOC107698081,LOC107753334 | other | downstream | 675504 | 27405450 ~ 27490461 (+) |
G139781 | NA | other | downstream | 698781 | 27428727 ~ 27429477 (+) |
dbnlb | dbnl | other | downstream | 1108299 | 27838245 ~ 27859702 (+) |