LOC117595683


Basic Information

Item Value
gene id LOC117595683
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 25938646 ~ 25940631 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945897.2
TAAACCATCGGTGTGTATGTTCACAACCCGCCcctttttctgctttatttaaaaGGAAGAATCTGCTGCTGGTTGCAGAATTTACAACACTGAAAATATTCCAACTTGGAAACATGgctttGCTGAAGAAGACATTGGTGGGAGGTTTTGTCCTGTTTGGCATTATTCCTCTGATTCGTGCCTGCTCGTTGATGGACGCTGGTGGcaaagATCAGTGTCTGGATTACTTCGATTCTTCATGGCACCCACATGGATCCACCTGGACAAACCGCAACTGTGTTACATGCACTTGTAGGCCTGGATACATGATCTGCTGCTCTgaATTTCCAAAGTCTGTGAGCCCTGGCTGCACCCTGCAAAAGGACtttaaaacatgcaaatataCAGTGACTAAGAATGACCCATCAGTTGAATGTAAAGTCAACCCCATTTAAAGTTGTTGAGACAGAAGTTTCAAAATCAAGGCTCACATATAAGGCCATTGTGCAAACAATAATGTAGGTAGAATGTGAGCCTTTTGTAGTTTAGTCTGAGAAATCTGCTCTTACAATAAAGCATTACACAAAACAa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945897.2 True 570 mRNA 0.42 4 25938646 25940631

Neighbor

gene id symbol gene type direction distance location
LOC113537824 NA coding upstream 19383 25917747 ~ 25919263 (+)
disp3 disp3,LOC107710822,LOC107553125,LOC107678473,LOC107562651 coding upstream 134204 25762965 ~ 25804442 (+)
si:dkey-32e23.4 si:dkey-32e23.4,LOC108426682,LOC108265374,LOC103036512,LOC107710834,LOC107562650,LOC107665195,LOC107678420 coding upstream 235521 25686205 ~ 25703125 (+)
ubl4a ubl4a,zgc:56596,LOC107665196,LOC107553161,LOC107562643 coding upstream 266746 25666925 ~ 25671900 (+)
b2ml b2m coding upstream 273348 25662794 ~ 25665298 (+)
antxr1a antxrl,antxr1a,antxr1,LOC108265351,LOC107661337,LOC107710819 coding downstream 12336 25952967 ~ 25989162 (+)
LOC113546011 LOC108265344 coding downstream 142268 26082899 ~ 26087466 (+)
fahd2a fahd2b,LOC108440674,LOC107753161,LOC107703178,LOC107712485,LOC102211511,LOC105902774 coding downstream 156027 26096658 ~ 26107903 (+)
npc1l1 npc1l1 coding downstream 383785 26324416 ~ 26341597 (+)
myl7 myl7,LOC107753162,LOC107554405,LOC107703146,LOC106580582 coding downstream 427784 26368415 ~ 26371797 (+)
G139172 NA non-coding upstream 123605 25810175 ~ 25815041 (+)
G139166 NA non-coding upstream 255555 25672518 ~ 25683091 (+)
G138961 NA non-coding upstream 487069 25448615 ~ 25451577 (+)
LOC117597843 LOC108261789,LOC108265915 non-coding upstream 510458 25421054 ~ 25428188 (+)
LOC113533374 NA non-coding upstream 605033 25309905 ~ 25333613 (+)
LOC113546140 NA non-coding downstream 8218 25948849 ~ 25950449 (+)
G139235 LOC108265343 non-coding downstream 91963 26032594 ~ 26036133 (+)
G139551 NA non-coding downstream 572261 26512892 ~ 26519482 (+)
G139647 NA non-coding downstream 938005 26878636 ~ 26899417 (+)
G139653 NA non-coding downstream 950446 26891077 ~ 26894530 (+)
LOC117597866 NA other upstream 21839 25909575 ~ 25916807 (+)
egr3 egr3 other upstream 379915 25551894 ~ 25558731 (+)
LOC113533115 gnrh1 other upstream 804388 25132741 ~ 25134258 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1924865 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 2043921 23890416 ~ 23894725 (+)
car15 LOC108264895 other downstream 459560 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 622189 26562820 ~ 26567932 (+)
rimbp2 rimbp2,LOC108414005 other downstream 685422 26626053 ~ 26729946 (+)
fam160b2 LOC108265858 other downstream 1242390 27183021 ~ 27261741 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other downstream 1326544 27267175 ~ 27295337 (+)

Expression


Co-expression Network