LOC113546156


Basic Information

Item Value
gene id LOC113546156
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 28103189 ~ 28110098 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026945919.2
TAGTTCACTCTAGAGCTTTCTGACTGATCCGGTCTCTCATTTCCCCCGgagaaggacaaaaaaaaaatctggcaggTAGCCAGGAGTTATTTAGGAGCGTGTCATATTCAGTCAGTaccgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaggtgtagTGGGCTGAGCAGGAAGCGCAGAGCAATTAAAATCGCGCGTGTCCAAGAGACTGAgtctcgagagagagagagagagagagagagaaagagagagagaaagggtaaTCGAGTCGAATTTGTTTTGGGGCGTCGAAAAAAAAACCACGCACACACTGTTATAAATAGTGGTGTGTGAGGAGAGGATGTGAGCCTTGGTGAGCCTTGGTGAGCTGGATATCTACCCACCGAGCATGGAAGTGAAAGAAGAGCGCGCGGACGGTCGCGAGGTGCGCGAGGCTTACACGATACTTGTGGAATCGGACGCGATCGTGCGCAACAAGCGCGCGCTCCGGCGCGAGATGTGCATCAGCCGCATCGTCATTTTCATCCTCCTGATCACCTGCGTGGCCTTCTGTGTCATCCTGTACATCCAACAGGACCATGCAAGCAAGAATACCAAAAACAAGGAAAAGGCAAATGaAACATGTGCCACATTCCAACCCGGCAACGCAGAAGCTCACAAAGTAGATGATCAGACACCTCCCATGGCTTCCCTGAGCATTCACCCTAATTCAATGAACCCCATCCTGACATGGCAGGCTCATCATAAGCACATGAACGACTTCTGCTTGGAAGGCCCCTGCGAGTCTCTGGTCATACCTCAAGATGGCAAGTACAGACTCGGCCTGCAGATAACATACGGGGAAGAGAACCCCAAGGAAGAGCAGAGCCATCTGGCTCACAACATTGTCATGTACTCTGACAGTTACAACGATCCGATGACCATTCTGTCCGTCTATGAGACCGTTTACAAGAAGAGCACCTGGTTGAAATCCGTATACTCTGAGGTCATCCATGTTTTCAGTAAGGGGGACAGAGTCAAGGTGCAGAGCGATAACGCCAAACTCATCGACAGAAGTGGACAACCGTGGACGAAAAACTTTCTCACTTTCCAATTTGTTTCCAAACTGAGGGATCTATGAGCTCTTTAGCAGAGCAAGGACATCTAACACACCATCCATATACACTAAACTAATCAAAGCTAACTAACAAAGCTAACATTGCAGAGTGTGATTGGATGAGTGTAATAcaactgtactgtatttttctttaccTTTTTCTGTTCTCGGCCAATAGCAGGTGCTGTTATTATTAGTGAAGCATATTGTAATGATTTTATAATATTGTCTCATGCCTAATTTTGGTTTTTATGGTAGGCGTGATGCTCCAGAAGATACACTGAAGGTACACTACCATTAACTTGCGCTAACATATTATAACCCTACTGGTATGCTAGCATAAATTTAGCATGCTCATAGCGGCGGTGATTGTACCaaaaaacagctgtttataaAGTGAATTACAAGCGTTCAGCATTAACTATTGCTCTGTAATTAACTACAGCAACACTAAGATTAcaaaaactaaaccaaacaTGGTGCTAAAGTGAACAAGTGCCATTTGAGATCCAGGACatattaagggaaaaaaaagtcctgGTACGTTAATCGGACTTTCACAACAAAGCTACCTGTGTGAGAAACCGCTAAATGGGACGGCCTGGAAAAGGCGCTAACACAGGAAGCGGTGTACGGTGAAAACCCGGACCTGCAGCCTGTTGCACCAGCTGAACACAAGTTCGCTCAGAGTGAAAAGTCGATCCTAATCATCTGTAGGTTGAGGGGAGCTAAAAATTAGCGCAGTCAAGAATTTTTTGCGTAAAGTTATCATATAATTTATGCCACCATGTATTTCactagacagctagctagctgttaaATGCTAGTTTAGTTGCTAGCTGTGGAATTCAAACATTTTCAGCATTGACACACTTAGTAGCTaactttctctttcagaaatCAGAATGCTGTATGGAAAACTCTTAACCTTCCTGCTGATATTTCCTCACCGAaaaacagaaacttttttttgtagtatttcaatttcaaaatgatatttattttaaccatagataaatgaacaaaatcagTATTTATCCATCTGTTTTCTAtcgtatttgtattttttaatgttgtatcTTGGTTTTACTCTGCACAcatttacgttttttttttttttggtacttttGGTTACCAATTTTCAGTACCCCACCTCTAGGTGTATGTATGTTTGAAGTTATAATGTAAGGCTAGGTTGTATCTATGCCACTTGGTGCAAGCGTTGATCTTTTAGTAGTTCGTAAACTCGACCGGAGCGGACATGTACATTACAAGCTAGGCTACGTTCAGCTGGTTTAACAGGCTGCAGCAATCCATATCTACATATATACATGCAGTATATATAC

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026945919.2 True 2453 mRNA 0.43 4 28103189 28110098

Neighbor

gene id symbol gene type direction distance location
si:ch211-158d24.2 LOC108265298 coding upstream 12396 28054188 ~ 28090793 (+)
LOC117597849 NA coding upstream 87901 28005083 ~ 28015288 (+)
olfml2a olfml2a,olm2a coding upstream 120106 27954282 ~ 27983083 (+)
polr3d polr3d coding upstream 169960 27926636 ~ 27933229 (+)
gins4 gins4,LOC107678389,LOC107747805,LOC107698091 coding upstream 198557 27898573 ~ 27904632 (+)
si:dkeyp-14d3.1 tmem132c coding downstream 86758 28196856 ~ 28413159 (+)
glt1d1 glt1d1 coding downstream 358321 28468419 ~ 28495033 (+)
sf3a1 sf3a1,LOC107564451,LOC107550953 coding downstream 1043448 29153546 ~ 29164988 (+)
pold2 pold2,LOC107747204 coding downstream 1057382 29167480 ~ 29178413 (+)
bag4 bag4,LOC107702866,LOC107548251,LOC103396927 coding downstream 1196913 29307011 ~ 29313313 (+)
G140244 NA non-coding upstream 161102 27930723 ~ 27942087 (+)
G140240 NA non-coding upstream 167371 27931210 ~ 27935818 (+)
G140237 NA non-coding upstream 251857 27774737 ~ 27851332 (+)
G140236 NA non-coding upstream 329545 27772444 ~ 27773644 (+)
G140170 NA non-coding upstream 491854 27610947 ~ 27611335 (+)
G140307 NA non-coding downstream 14508 28124606 ~ 28124811 (+)
G140311 NA non-coding downstream 26513 28136611 ~ 28136832 (+)
G140318 NA non-coding downstream 45610 28155708 ~ 28155911 (+)
G140328 NA non-coding downstream 61490 28171588 ~ 28171793 (+)
G140574 slc15a4,LOC107564463,LOC107712031,LOC107576090 non-coding downstream 309022 28419120 ~ 28434435 (+)
arpc5la arpc5la,LOC108265305,LOC108411248,LOC107571143,LOC107753090,LOC107550963,LOC107676626 other upstream 75739 28019184 ~ 28027450 (+)
dbnlb dbnl other upstream 243487 27838245 ~ 27859702 (+)
nr6a1a nr6a1,LOC107563838,LOC107721088,LOC107678448,LOC107698081,LOC107753334 other upstream 612728 27405450 ~ 27490461 (+)
G139781 NA other upstream 673712 27428727 ~ 27429477 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other upstream 807852 27267175 ~ 27295337 (+)
slc7a4 slc7a4 other downstream 638736 28748834 ~ 28803174 (+)
LOC117597881 LOC108265326 other downstream 1215836 29325934 ~ 29351762 (+)
LOC113546008 LOC108264940,LOC108412050 other downstream 1750090 29860188 ~ 29876280 (+)
LOC113546064 hps4 other downstream 1793415 29903513 ~ 29929070 (+)
G141234 hps4 other downstream 1799931 29910029 ~ 29929154 (+)

Expression


Co-expression Network