spag17


Basic Information

Item Value
gene id spag17
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 726792 ~ 758536 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306319.1
ACAGTTCTCTCCCAGACACATACAGCAACTTCAGCACAATCATTCGTTTAATGAGTTAATCTGTAGTGCGATTTCGACCTGAATGAAAAAGGCTGGCTGacggatgtgtgtgtgaaggctgttgactgtgcagtgtgtgaaaCCGGACTGAAATGGCTCCTAAACGCGCTAAGAGTGAGGGCAGCGGAAGTGCAGGTGCAGTGGGGAAGCAGGGGGAAGCGGCTCTGAGCTCAGCTGTGCTGCAGGAGgagtgttggggtgtgtgtgtgtctctggtggtgtgtgacagtgtgtatgaTGAGGTGTGTATGAGAGCTCTATGTCACGCCGTACAGCAGCCCCTCCGTCGCCTCTTCACACTCCTGTCCTGGGAGAACCTGCTGCAGAAGGTTAATGATCTCGGGAACCCAAAGACGAGGAAGATCAAAGAGCTTCCTGCATTTTAtgaggtgacaGAGGTGGCGAGGTCAGTGTTGGACTCAGGAGACGAGCTTTCTGTTGACTTGGTGGCAAAATTAGTGAAGTTTCAACTGCTGGACATCAAGAACACTGACATGCAGAGAAGAGCTGCAGTACAGagagcAGCAGGTTTATTGTCTCCAAGTGCTAAAGACTCAGCTAAAGGAGAAAAAGGTAAAAAAGCAGCAGAAGCTCCGCCTCCCTGTAAAGACACCAAACTGATACGCAGAGGAGACGAAAACACCAGCAGCTACATCGacgaTGAACCAGACGACGGCCCACAACACTACGTCCTCATGACGGGTTTCCATCAGCCGAGTCTGATCTCTGCATTAGACTCTGTCGGTGTTCACATCTCCAACGTAATCAGACTGAAATCAGACAGAAGTCAGAACTCACACGTGGATCAGGAGGAGGAAAGAACCGACACGTCTGAGGAACACGaattcTCAGCTGGTGCGTCGGCTCTTCAGCAGGAGCTCAGCGTGTTCTGGGATCAGCTGGACGGAGTTCTGAACAGCGCCGGCTTCCAGTCCCCACTTTCTGACGTCGCTCGACTGGACTACAGAGTGGATCAGAACCTGCTGAGCCGAGATTTAACCAAAGCTGAGGAaatggatgaagtgggcgtggccataTTTGAGGGCGTGGCCTGTTTGCTGTATGACAGTTTGGATTGGAGGAGGCAGCATGAGCACTACCTGAGCAGAATGAGACTGATCCACATCCCGAACATCTCCACACCTGTACACAACATCCGACCTGATACACCtgctgagGTGCTACCGGTGAGGAAGAAAGCGGAGGAAAGTTCAGagtcAGAGTGTGTGGACGTGGATATGAGGCTGTACTCTGATCTTCTGGACAGAATTCCCCTGCAGTGTGTCTCTGTTCCTCTCGTCCTGCACTGCCTGATCCAGCAGGTGGTTTCATCAGAACAGGAAGTGTGCGGTGGATCAGCGGCGTCAGACTCGACTTCAGACCCGGAGTGTGATTTACTCTCCTACATGATGTGGTGCGTGAGCGGTCTACCACGGAGCGCGCAGGAGAACAGCgagctgaTGGAGTATTTTGGACTTAAGGAGGAAGATCAAAGGGAAAGTAAAGAGAGAAGCCCCACCCTGCTGCATCATCACGATGAGAGATCAAAGAGACTCCACCAcatacctgtGTCAGGCAGTTTGGATGCagtgagtgtagaggtgtgtatgATGAAGAAGAGCTCTGTGTGGAACACTCTGATGTGTAAACACCTCGACACCAGCAGCCTCAATACAGCCAGGAGACATGAACTACTGCACTACTGTTCCAccgactcTCTGAGCTCTGCTGATGTTCAGAGGCtcctcaggctgtgtgtgtttgagagcaTGCCCCTGACTGCAGTCGATGAGAGCGGAGGATACACACTCGCCGCGTCACACACTGCGTTACCGTGGGACGACCCCGTGACCTTCACACACACCGCCTACTGCAGCCGCGACTCCACCCACGaAAGTAGAGCTGGGTGTGACGAGCAGCAGGAGAATAAAGTCAGTGTAGAAGATTTACAGAAGACGCTGATTCGACACTTCAGACACTGGAACTTCACCGAACATCACACTGCTGAAGTCTTTCCTCaggttctgcagacagtgtgtgagtCGTACAGATGTGTGGATTCGTTTCACAGCACTCAGTCCAACGTCATGTACGTCATCTGCCACAATCCCATGAGTCCTGAGAGGAGCAGCAGAGGATCATGGGAAGTCTCTCTTCACACCGATGTTGGATTCAGgagtttCCTGGAGAACGTAGCAGAATCCATCAGAGACTGGAGCAGAGCGGAGGAGGAGCGActgcagcaacaacaacaacaacaacaacaacaacaacaacaacaacagggaGACAAAGACGCTGGATACAACGACGAAAGgagtgCTGGAGAAGTCGGAGGTGTTTATACGACACGACTCTCTGAAAgCGTGGAAGCTGGAGCAGGACAGACAGAAGGATGAGGAAGGGACtaagaagatgaagaaggagaACGGAGAGAAGAGTTCGGCTaaaggaggagagagaacaGCGTCGACCCGAGAGAGCAGGAAGAGCCGAGAGGACGAGtgtcacacacctcacacttcCACAGAGCAGAGGAGCGACAGcagtgacgcacacacacacaccgagaccCAACCtgcgtTTACAGGTTACAGGATGGACGGCAGGCTGGTGCAGGTGAGAGGAGAGAGTCAGTGTGTTTATCCATCAGACGGAGGACAGATCAGTGTGGAGAGAGTCCACTACGT
>XM_034306320.1
ACAGTTCTCTCCCAGACACATACAGCAACTTCAGCACAATCATTCGTTTAATGAGTTAATCTGTAGTGCGATTTCGACCTGAATGAAAAAGGCTGGCTGacggatgtgtgtgtgaaggctgttgactgtgcagtgtgtgaaaCCGGACTGAAATGGCTCCTAAACGCGCTAAGAGTGAGGGCAGCGGAAGTGCAGGTGCAGTGGGGAAGCAGGGGGAAGCGGCTCTGAGCTCAGCTGTGCTGCAGGAGGTTAATGATCTCGGGAACCCAAAGACGAGGAAGATCAAAGAGCTTCCTGCATTTTAtgaggtgacaGAGGTGGCGAGGTCAGTGTTGGACTCAGGAGACGAGCTTTCTGTTGACTTGGTGGCAAAATTAGTGAAGTTTCAACTGCTGGACATCAAGAACACTGACATGCAGAGAAGAGCTGCAGTACAGagagcAGCAGGTTTATTGTCTCCAAGTGCTAAAGACTCAGCTAAAGGAGAAAAAGGTAAAAAAGCAGCAGAAGCTCCGCCTCCCTGTAAAGACACCAAACTGATACGCAGAGGAGACGAAAACACCAGCAGCTACATCGacgaTGAACCAGACGACGGCCCACAACACTACGTCCTCATGACGGGTTTCCATCAGCCGAGTCTGATCTCTGCATTAGACTCTGTCGGTGTTCACATCTCCAACGTAATCAGACTGAAATCAGACAGAAGTCAGAACTCACACGTGGATCAGGAGGAGGAAAGAACCGACACGTCTGAGGAACACGaattcTCAGCTGGTGCGTCGGCTCTTCAGCAGGAGCTCAGCGTGTTCTGGGATCAGCTGGACGGAGTTCTGAACAGCGCCGGCTTCCAGTCCCCACTTTCTGACGTCGCTCGACTGGACTACAGAGTGGATCAGAACCTGCTGAGCCGAGATTTAACCAAAGCTGAGGAaatggatgaagtgggcgtggccataTTTGAGGGCGTGGCCTGTTTGCTGTATGACAGTTTGGATTGGAGGAGGCAGCATGAGCACTACCTGAGCAGAATGAGACTGATCCACATCCCGAACATCTCCACACCTGTACACAACATCCGACCTGATACACCtgctgagGTGCTACCGGTGAGGAAGAAAGCGGAGGAAAGTTCAGagtcAGAGTGTGTGGACGTGGATATGAGGCTGTACTCTGATCTTCTGGACAGAATTCCCCTGCAGTGTGTCTCTGTTCCTCTCGTCCTGCACTGCCTGATCCAGCAGGTGGTTTCATCAGAACAGGAAGTGTGCGGTGGATCAGCGGCGTCAGACTCGACTTCAGACCCGGAGTGTGATTTACTCTCCTACATGATGTGGTGCGTGAGCGGTCTACCACGGAGCGCGCAGGAGAACAGCgagctgaTGGAGTATTTTGGACTTAAGGAGGAAGATCAAAGGGAAAGTAAAGAGAGAAGCCCCACCCTGCTGCATCATCACGATGAGAGATCAAAGAGACTCCACCAcatacctgtGTCAGGCAGTTTGGATGCagtgagtgtagaggtgtgtatgATGAAGAAGAGCTCTGTGTGGAACACTCTGATGTGTAAACACCTCGACACCAGCAGCCTCAATACAGCCAGGAGACATGAACTACTGCACTACTGTTCCAccgactcTCTGAGCTCTGCTGATGTTCAGAGGCtcctcaggctgtgtgtgtttgagagcaTGCCCCTGACTGCAGTCGATGAGAGCGGAGGATACACACTCGCCGCGTCACACACTGCGTTACCGTGGGACGACCCCGTGACCTTCACACACACCGCCTACTGCAGCCGCGACTCCACCCACGaAAGTAGAGCTGGGTGTGACGAGCAGCAGGAGAATAAAGTCAGTGTAGAAGATTTACAGAAGACGCTGATTCGACACTTCAGACACTGGAACTTCACCGAACATCACACTGCTGAAGTCTTTCCTCaggttctgcagacagtgtgtgagtCGTACAGATGTGTGGATTCGTTTCACAGCACTCAGTCCAACGTCATGTACGTCATCTGCCACAATCCCATGAGTCCTGAGAGGAGCAGCAGAGGATCATGGGAAGTCTCTCTTCACACCGATGTTGGATTCAGgagtttCCTGGAGAACGTAGCAGAATCCATCAGAGACTGGAGCAGAGCGGAGGAGGAGCGActgcagcaacaacaacaacaacaacaacaacaacaacaacaacaacagggaGACAAAGACGCTGGATACAACGACGAAAGgagtgCTGGAGAAGTCGGAGGTGTTTATACGACACGACTCTCTGAAAgCGTGGAAGCTGGAGCAGGACAGACAGAAGGATGAGGAAGGGACtaagaagatgaagaaggagaACGGAGAGAAGAGTTCGGCTaaaggaggagagagaacaGCGTCGACCCGAGAGAGCAGGAAGAGCCGAGAGGACGAGtgtcacacacctcacacttcCACAGAGCAGAGGAGCGACAGcagtgacgcacacacacacaccgagaccCAACCtgcgtTTACAGGTTACAGGATGGACGGCAGGCTGGTGCAGGTGAGAGGAGAGAGTCAGTGTGTTTATCCATCAGACGGAGGACAGATCAGTGTGGAGAGAGTCCACTACGT

Function

NR:

description
PREDICTED: sperm-associated antigen 17

GO: NA

KEGG:

id description
ko00650 Butanoate metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306319.1 True 2750 mRNA 0.52 21 726792 758536
XM_034306320.1 False 2609 mRNA 0.52 20 726792 758536

Neighbor

gene id symbol gene type direction distance location
LOC113525715 ski,LOC108265356,LOC107599811,LOC106937962 coding upstream 191793 515310 ~ 534999 (+)
tnfsf10 tnfsf10,LOC108261837,LOC107663625,LOC107590350 coding upstream 232680 490445 ~ 494112 (+)
LOC113541233 nceh1 coding upstream 248745 467761 ~ 478047 (+)
prkcz LOC108265357,LOC108415018,LOC108250564 coding upstream 270704 410989 ~ 456088 (+)
tnni3k tnni3k,LOC107550356,LOC107743849,LOC107657874,LOC107710912,LOC102789447 coding upstream 360011 342662 ~ 366781 (+)
LOC117597816 LOC108265208 coding downstream 765 759301 ~ 777486 (+)
slc5a5 slc5a5 coding downstream 182006 940542 ~ 960999 (+)
jak3 jak3 coding downstream 206962 965498 ~ 994785 (+)
LOC113535335 NA coding downstream 487994 1246530 ~ 1255935 (+)
LOC117597828 NA coding downstream 498907 1257443 ~ 1263654 (+)
G124553 NA non-coding upstream 34546 687106 ~ 692246 (+)
G124514 NA non-coding upstream 189632 515755 ~ 537160 (+)
G124519 NA non-coding upstream 208893 494892 ~ 517899 (+)
G124520 NA non-coding upstream 223000 503448 ~ 503792 (+)
G124517 NA non-coding upstream 236718 489867 ~ 490074 (+)
G124643 NA non-coding downstream 164083 922619 ~ 923124 (+)
G124874 NA non-coding downstream 236316 994852 ~ 995170 (+)
G124895 NA non-coding downstream 306065 1064601 ~ 1065080 (+)
G124918 NA non-coding downstream 354518 1113054 ~ 1114384 (+)
G124947 NA non-coding downstream 469753 1228289 ~ 1229056 (+)
G124565 NA other upstream 20935 704589 ~ 705857 (+)
cept1a LOC108265319 other upstream 68229 605859 ~ 658563 (+)
G124541 cept1a,LOC108265319 other upstream 78839 645966 ~ 647953 (+)
si:ch73-70k4.1 LOC108265358 other upstream 217882 507064 ~ 508910 (+)
G124498 NA other upstream 319358 399756 ~ 407434 (+)
dennd2da dennd2d,LOC108265321,LOC108413600 other downstream 19428 777964 ~ 821367 (+)
lonrf1l lonrf1 other downstream 345179 1103715 ~ 1112067 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other downstream 396877 1155413 ~ 1201926 (+)
G125062 LOC108265639 other downstream 585800 1344336 ~ 1346585 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other downstream 1044939 1803475 ~ 1806790 (+)

Expression


Co-expression Network